These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1000 fasta sequence [TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA] [+] EMBL AK073098 [TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGC GGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGA ] [+] EMBL AU181522 [ CTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGT ] [+] EMBL AU222626 [ CAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGGAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCG ] [+] EMBL AU058449 [ CTCTCACCCCGGCNCCGGCGAGGGCGTCACCGNGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGNGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA] [+] EMBL AU091695 [ CTGCTNCCGAGGGGGCTACTGCTGCNCCGGCGAGGGCGTCGCCGAGGCGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCAGATCTGAATTCTGAACAAAAAAAAAA ] consensusID : consensus_10650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence [AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCC-TGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAAC] [+] EMBL AK060414 [AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCC TGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAAC] [+] EMBL AU058416 [ AACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAANCGCCTCCGCCTTGCAGGGCCGCATCGAGGGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10650#0 -------------------TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGA 41 consensus_10650#1 AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGA 60 ***************************************** consensus_10650#0 TCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCA 101 consensus_10650#1 TCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCA 120 ************************************************************ consensus_10650#0 GCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCG 161 consensus_10650#1 GCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCG 180 ************************************************************ consensus_10650#0 TCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCT 221 consensus_10650#1 TCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCT 240 ************************************************************ consensus_10650#0 CCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCG 281 consensus_10650#1 CCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCG-------- 292 **************************************************** consensus_10650#0 CCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGC 341 consensus_10650#1 ------------------------------------------------------------ consensus_10650#0 TCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGG 401 consensus_10650#1 ------------------------------------------------------------ consensus_10650#0 CCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGA 461 consensus_10650#1 ------------------------------------------------------------ consensus_10650#0 ACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGC 521 consensus_10650#1 ---------------------------------------CCGCCGCGGCCAAGAGGAAGC 313 ********************* consensus_10650#0 GGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCA 581 consensus_10650#1 GGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCA 373 ************************************************************ consensus_10650#0 AGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCG 641 consensus_10650#1 AGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCG 433 ************************************************************ consensus_10650#0 CCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCG 701 consensus_10650#1 CCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCG 493 ***************************************** ****************** consensus_10650#0 AGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGA 761 consensus_10650#1 AGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGA 553 *************** ******************************************** consensus_10650#0 CATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTG 821 consensus_10650#1 CATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTG 613 ************************************************************ consensus_10650#0 CTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTA 881 consensus_10650#1 CTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTA 673 ************************************************************ consensus_10650#0 TGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATT 941 consensus_10650#1 TGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATT 733 ************************************************************ consensus_10650#0 AGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA 1000 consensus_10650#1 AGTCATGAATTCCTGAATCAAC------------------------------------- 755 ********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||