|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1000 fasta sequence
[TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA]
[+] EMBL AK073098 [TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGC GGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGA ]
[+] EMBL AU181522 [ CTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGT ]
[+] EMBL AU222626 [ CAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGCCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGCTCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGGCCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGGAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCG ]
[+] EMBL AU058449 [ CTCTCACCCCGGCNCCGGCGAGGGCGTCACCGNGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGNGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA]
[+] EMBL AU091695 [ CTGCTNCCGAGGGGGCTACTGCTGCNCCGGCGAGGGCGTCGCCGAGGCGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACACATTTCCAGATCTGAATTCTGAACAAAAAAAAAA ]
consensusID : consensus_10650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence
[AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCC-TGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAAC]
[+] EMBL AK060414 [AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAAGCGCCTCCGCC TGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCGCCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAAC]
[+] EMBL AU058416 [ AACTCCAATCCAATCGAGAGGTCGATCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCAGCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCGTCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCTCCAANCGCCTCCGCCTTGCAGGGCCGCATCGAGGGCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10650#0 -------------------TCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGA 41
consensus_10650#1 AAAAAAAAAAAATCCCAATTCCCATCTGCTCCTCCAACTCCAATCCAATCGAGAGGTCGA 60
*****************************************
consensus_10650#0 TCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCA 101
consensus_10650#1 TCTCTGAATCTGATCTGATCACCATGGTGGTGGCACTGGGTCCCGGCCGGTTCTACGGCA 120
************************************************************
consensus_10650#0 GCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCG 161
consensus_10650#1 GCAGCCTCCCACGGCCGCGCTTCTTCTCCGGCGGCGACCGCGTCGAGCCGCCGGTGGCCG 180
************************************************************
consensus_10650#0 TCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCT 221
consensus_10650#1 TCACCGACCCGCTCATGGCGTGGGCGCACGAGGCGCACTGGTCCATGGGCGGCCTCAGCT 240
************************************************************
consensus_10650#0 CCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCGCCGCCGCG 281
consensus_10650#1 CCAAGCGCCTCCGCCTGCAGGGCCGCATCGAGGGCTCCATCGACAAGCTCCG-------- 292
****************************************************
consensus_10650#0 CCCGCCGCGACGCCAGGAAGGCGGCCAAGGCCCGCGCCGCCGGCATCAAGCCCCGCTCGC 341
consensus_10650#1 ------------------------------------------------------------
consensus_10650#0 TCGCCGCCCTCGGCTCCGACGACGACGACTCCTCCTCCGACGAGGAAGAGGAGGTCGAGG 401
consensus_10650#1 ------------------------------------------------------------
consensus_10650#0 CCCAGAAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGAAGGAGCAGGAGGAGGAGA 461
consensus_10650#1 ------------------------------------------------------------
consensus_10650#0 ACGAGGAAGAGGAAGAGGAGGAAGCCCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGC 521
consensus_10650#1 ---------------------------------------CCGCCGCGGCCAAGAGGAAGC 313
*********************
consensus_10650#0 GGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCA 581
consensus_10650#1 GGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATGCAGGAGGGGGAGGCCA 373
************************************************************
consensus_10650#0 AGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCG 641
consensus_10650#1 AGAAGCAGAAGCCCGCAGCAACCTCTACACCGGCGAGGACTTCACCGAGGAGGAAGGCCG 433
************************************************************
consensus_10650#0 CCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGGGGGGGAAGGCTGCTGCCG 701
consensus_10650#1 CCGAGGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGAGGGGGAAGGCTGCTGCCG 493
***************************************** ******************
consensus_10650#0 AGGGGGCTACTGCTGCACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGA 761
consensus_10650#1 AGGGGGCTACTGCTGTACCGGCGAGGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGA 553
*************** ********************************************
consensus_10650#0 CATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTG 821
consensus_10650#1 CATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGTGAAATCCTAGTTCTTG 613
************************************************************
consensus_10650#0 CTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTA 881
consensus_10650#1 CTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTA 673
************************************************************
consensus_10650#0 TGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATT 941
consensus_10650#1 TGTGTGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATT 733
************************************************************
consensus_10650#0 AGTCATGAATTCCTGAATCAACACATTTCCNGATCTGAATTCTGAACAAAAAAAAAAAA 1000
consensus_10650#1 AGTCATGAATTCCTGAATCAAC------------------------------------- 755
**********************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||