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Oryza sativa
cluster # 10660 cluster # 10660       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10660#0 length = 1113 sequences # 6  
consensus_10660#1 length = 277 sequences # 1  

consensusID : consensus_10660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1113
fasta sequence
                              [CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCT-GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT---A--AAAAAAGAANNAAAAANGAAAA]

[+] EMBL AK107879             [CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATATTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTG                                 ]
[+] EMBL CB000499             [                                                                                                                                                                                                                                                                                                       ACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCCATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGACGATGTCAAGAGGAAGAACCCCAGACGACTACTTATTTCTCCAGGGCCT GGTGAGCCACAACATTCAGGTATATCATTGCAGACTGTTCTGGAACCCGGACCTACTATCCCAATTTTTGGTGTCTGCATGGGTCTGAACCGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB000830             [                                                                                                                                                                                                                                                                                                                                   ATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCC                                                                                                                                                                                                                                                                    ]
[+] EMBL AA751371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGAATACTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA765705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACTTCGTGAGGTT ATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTNGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT   A  AAAAAAGAANNAAAAANGAAAA]
[+] EMBL AT003492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGGATTAAAAAAAAAAAAAAAAa     ]


>consensus_10660#0 CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCC TCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGG CCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGG CGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTG TTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCC GGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACC TCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTA CCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGTG AGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAA TTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCC GTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAG GGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGG TGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATG GCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACC CAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCG AGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAA AAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTA ATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCT TTGTGGATCTAAAAAAAGAANNAAAAANGAAAA



consensusID : consensus_10660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA]

[+] EMBL CF335488             [AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA]


>consensus_10660#1 AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT TGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGG CCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10660#0      CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCC 60
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      TCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGG 120
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      CCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGG 180
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      CGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTG 240
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      TTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCC 300
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      GGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACC 360
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      TCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTA 420
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      CCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGTG 480
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      AGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAA 540
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      TTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCC 600
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      GTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAG 660
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      GGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGG 720
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      TGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATG 780
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      GCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACC 840
consensus_10660#1      ------------------------------------------------------------
                                                                                   

consensus_10660#0      CAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCG 900
consensus_10660#1      -AAAGAGC-TCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATAT-----ATATCCTTTG 53
                        * ***** **  *        *  *    ** ** ** * *  *     *  * * * *

consensus_10660#0      AGGAGCTGGAG-AAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCA 959
consensus_10660#1      TGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 113
                        *** ** **  ****    * * *     ** **  *  * *    *       *   *

consensus_10660#0      AAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGT 1019
consensus_10660#1      AAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 170
                       ***  * ***       **       * *   *    * ***   *****    *  *  

consensus_10660#0      AATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCC 1079
consensus_10660#1      AAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGG 230
                       ** **   ***** *   * *   *** * * * *     *    *** ** * *     

consensus_10660#0      T--TTGTGGATCTAAAAAAAGAANN-----AAAAANGAAAA------ 1113
consensus_10660#1      AAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA 277
                          **  **  * ******* **       ***** *          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)