These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1113 fasta sequence [CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCT-GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT---A--AAAAAAGAANNAAAAANGAAAA] [+] EMBL AK107879 [CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCCTCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGGCCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGGCGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTGTTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATATTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTG ] [+] EMBL CB000499 [ ACGCCGGGCCACCGAGAAGCAGCCCATCATTGTCATCCATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGACGATGTCAAGAGGAAGAACCCCAGACGACTACTTATTTCTCCAGGGCCT GGTGAGCCACAACATTCAGGTATATCATTGCAGACTGTTCTGGAACCCGGACCTACTATCCCAATTTTTGGTGTCTGCATGGGTCTGAACCGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTT ] [+] EMBL CB000830 [ ATTGTCATCGATAACTACGACAGCTTTACCTACAACCTCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTACCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACCCAGAGAGCATCATCACCC ] [+] EMBL AA751371 [ GGAATACTTATTTCTCCAGGGCCT GGTGAGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTGTTCAA ] [+] EMBL CA765705 [ AACTTCGTGAGGTT ATCGAGGAGCTGGAGAAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTNGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCT A AAAAAAGAANNAAAAANGAAAA] [+] EMBL AT003492 [ AGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGGATTAAAAAAAAAAAAAAAAa ] consensusID : consensus_10660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA] [+] EMBL CF335488 [AAAGAGCTCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATATATATCCTTTGTGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10660#0 CTCCTCCCCCCCAAAACCACACAAACACCCGCTGCGCCGCTCGCTTCCTCCTCCCCCCCC 60 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 TCGTGCTCGACATGGCGTGCTCCCACCTGGCCGCCGCCGCCGCCGCGGCCTCCCCGGCGG 120 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 CCGCGCGTTCACCGGCGGCCTCCAGCGCCGCAACCGCGAGCGCCTTCGCGCGCCTCTCGG 180 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 CGACGCCCCGGGTCGCGAGCGGCGGGTTGGCCGTTAGGGGCCAGAGGGGTGTAGCCGCTG 240 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 TTGTCGCCGCCGCCGCCGGGGCCGCCGCGGCGACGCCCGTGGCCGACATCGAGGAACGCC 300 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 GGGCCACCGAGAAGCAGCCCATCATTGTCATCGATAACTACGACAGCTTTACCTACAACC 360 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 TCTGCCAGTATATGGGGGAGCTTGGATTGAACTTTGAGGTATATCGCAATGATGAACTTA 420 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 CCATAGAGGATGTAAAGAGGAAGAACCCAAGAGGAATACTTATTTCTCCAGGGCCTGGTG 480 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 AGCCACAAGATTCAGGTATATCATTGCAGACTGTTCTGGAACTTGGACCTACCATCCCAA 540 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 TTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAAAGATTATCC 600 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 GTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAG 660 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 GGAAGGCCTTGTTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGG 720 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 TGATCGAGCAGGAGACCTTCCCCCATGACGCTCTGGAAGCCACCGCGTGGACTGAAGATG 780 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 GCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCCAATTCCACC 840 consensus_10660#1 ------------------------------------------------------------ consensus_10660#0 CAGAGAGCATCATCACCCCAGAAGGCAAGAGGATCATTCTCAACTTCGTGAGGTTCATCG 900 consensus_10660#1 -AAAGAGC-TCTCCTTTTGTACATTCGTTTGGTTCGTTGTAATAT-----ATATCCTTTG 53 * ***** ** * * * ** ** ** * * * * * * * * consensus_10660#0 AGGAGCTGGAG-AAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCA 959 consensus_10660#1 TGGATCTTGAATAAGCTCTATCCTGTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 113 *** ** ** **** * * * ** ** * * * * * * consensus_10660#0 AAAGTAGAAAGGGGCTTAAGCCGGGTAGATTCAGGGCAGAAAGTGAAAAAGGGTAGGAGT 1019 consensus_10660#1 AAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 170 *** * *** ** * * * * *** ***** * * consensus_10660#0 AATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAATATATATCC 1079 consensus_10660#1 AAAAAAAAAAAAAAAAACCCCGGGTTGCCCCTTCCCAAAAGAAATTTGAAAAAAAAGGGG 230 ** ** ***** * * * *** * * * * * *** ** * * consensus_10660#0 T--TTGTGGATCTAAAAAAAGAANN-----AAAAANGAAAA------ 1113 consensus_10660#1 AAATTCCGGGCCCAAAAAAAAAAATCCCCCAAAAAGGGGGGGTAAAA 277 ** ** * ******* ** ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||