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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 738 fasta sequence
[CGGCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG-AGGGAGGCGGAGGCGGC-AGGGGAGGCGG-AGTGGTGGAGGGCGTGCCGGAGAGG-TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG-CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA-TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT-TAATGATCCTTATGGCCAGCACACACACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091960 [CGGCAGCTCCCCCGCGCGCTCGC GCGGGGGCCCTCTCCCCCGCGTCGC GGTGCTGGCCGTGACCCCCGCGCCGTCCTNCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG AGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACT ]
[+] EMBL CB967444 [ GCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGG AGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTCGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAACTGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTCGTAGATATGCAAGACATTCTCGCAAAGTCTATTGATCCTTATGGCCAGCACACACA ]
[+] EMBL CB964638 [ GCAGCTCCCCCGCGCGCTCGCGGCGGGTGCCCTCTCCCCCGCGTCGCGGGTGCTGGCCGTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTGGTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTGAGGTGCTTCCACTTGGAAGGGAGGCGGAGGCGGC AGGGGAGGCGG AGTGGTGGAGGGCGTGCCGGAGAGG TTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTCGCAGTTTCAA TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTCGTAGTCTGTAGATATGCCAGAAATCATTGCACAGT TCATGATCCTTATGG ]
[-] EMBL CA762189 [ agaGGACGAGAC AAGG GG GG AGTGGTGGAGGGCGTGCCGGAGAGG TTCNACGCGTTTGACGCCGTGTTCGTTTGCTACTTCCCCGGGATGGGTGTCTCGGCCG CCGCGCTGCTCAAGTCGCTGGCCAGGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGAACATCCTGAAGCTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA TGATGAACATGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT TAATGATCCTTATGG CAGCCAAGTTACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU058234 [ GCGGCTAGGGGAGGCGGCAGTGNTGGAGGGCGTGCCGGAGAGGTTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGTCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAA TGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGT TAAaa ]
consensusID : consensus_10662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 581 fasta sequence
[CTCCCGTTCCGGCCAACACCACCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTCCTCCCTACCCCGCGACCCCGACCCTACTCGCGACCCATCAACCCGGGGTTTCCTACCNNCCTACGGCTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGTTGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTT-NTGACGAGCCTAATTTGGAATTTGCTGTTTTGCAGTTTCAATGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAAA]
[+] EMBL OSC3691 [CTCCCGTTCCGGCCAACACCACCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTCCTCCCTACCCCGCGACCCCGACCCTACTCGCGACCCATCAACCCGGGGTTTCCTACCNNCCTACGGCTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGTTGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTT NTGACGAGCCTAATTTGGAATTTG ]
[+] EMBL AU164050 [ CTCAGCCTTGCGTGCCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTCTCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTCATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCA GGGAACATCCTGAAGTTGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTTTGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAATGATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATCAACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10662#0 CGGCAGCTCCCCCGCGCGCTCGCGGCGGGGGCCCTCTCCCCCGCGTCGCGGGTGCTGGCC 60
consensus_10662#1 ---------------------------------------CTCCCGTTCCGGCCAACACCA 21
* * *** *** *
consensus_10662#0 GTGACCCCCGCGCCGTCCTTCGTGGACGCCCTCCTCTCGGGGCACCCCTGCGAGCTCCTG 120
consensus_10662#1 CCCTCTCCTCCCATGGCCTCCGCCTCCGCCTCCCTCTCGCTGGCGTTCTCCCCTCTCCTC 81
* ** * * *** ** **** ******* * ** * *****
consensus_10662#0 GTGGCCGCGCACGAGTCCCTGTACGTGCTGGCGGGGATCAAGGAGGGGCACGACGAGGTG 180
consensus_10662#1 CTCCCTAC-CCCGCGACCCCGACCCTACTCGCGA--------------CCCATCAACCCG 126
* * * * ** * *** * * * ** *** * * * * *
consensus_10662#0 AGGTGCTTCCACTTGGAGGGAGGCGGAGGCGGCAGGGGAGGCGGAGTGGTGGAGGGCGTG 240
consensus_10662#1 GGGT-TTCCTACCN-------------NCCTAC------GGCTCAGCCTT-----GCGTG 161
*** * * ** * * *** ** * *****
consensus_10662#0 CCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTC 300
consensus_10662#1 CCGGAGAGGTTCGACGCGTTCGACGCCGTGTTCGTCTGCTACTTCCCCGGGATGGGTGTC 221
************************************************************
consensus_10662#0 TCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTC 360
consensus_10662#1 TCGGCCGCCGCGCTGCTCAAGTCGCTGGCCAAGAGATGCTCCAAAGGTGGAAGAGTTGTC 281
************************************************************
consensus_10662#0 ATCTTTTTGGATCAAGGACGGCAAAGTTTGGACCAACATCGCAGGG-AACATCCTGAAGT 419
consensus_10662#1 ATCTTTTTGGATCAAGGACGGCAAAGTTTGGAGCAACATCGCAGGGGAACATNCTGAAGT 341
******************************** ************* ***** *******
consensus_10662#0 TGTAACTGCCGATTTGCCTACCAGGCCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTT 479
consensus_10662#1 TGTAACTGCCGATTTGCCTAACAGGGCTTCTCTAGAGAAGGCTACTGCCGGTAGCAAGTT 401
******************** **** **********************************
consensus_10662#0 TGAAATATTAGAGTTTGTTGACGAGCCTACTTTGTATCTTGCTGTTTTGCAGTTTCAATG 539
consensus_10662#1 TGAAATATTAGAGTTTNT-GACGAGCCTAATTTGGAATTTGCTGTTTTGCAGTTTCAATG 460
**************** * ********** **** * **********************
consensus_10662#0 ATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATC 599
consensus_10662#1 ATGAACTTGTTGAAAACAACAAATTATATAGACAGCTTGCCATCCATGCCGGCGAGAATC 520
************************************************************
consensus_10662#0 AACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAATGATCCTTATG 659
consensus_10662#1 AACTCGGCTTTGTAGTTTGTAGATATGCAAGAAATTATTGCAAAGTTAAAAAAAAAAAAA 580
************************************************* * *
consensus_10662#0 GCCAGCACACACACTTTGTAGTATCCCTGTTGACATATGGGAATTACCAGAAGCCCTGGC 719
consensus_10662#1 A----------------------------------------------------------- 581
consensus_10662#0 AAAAAAAAAAAAAAAAAAA 738
consensus_10662#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||