|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1059 fasta sequence
[TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC-GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA]
[+] EMBL AK073691 [TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAGCACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAA ]
[+] EMBL CF310329 [ CATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAG ]
[+] EMBL CF312955 [ CATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCTTCGCCGCCGGGAGCAAGATC GGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGACTCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAGCCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACTTGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATGTAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATATCAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATT ]
[-] EMBL CF310330 [ AGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA]
[-] EMBL CF312956 [ CCAATATCATTATCATCAGGATTACGTAGGAGACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTGGAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGAGAAGCATAGGAAGCTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCACGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTTGAGCATAGCTTGGCGAGCACTGGGCGTGCAGCCACGCGAGCAGCAGAGGTGTACTCGTTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTTATAGCTGCGTCCGCCGAAATATTGAACTAGTATCTGATGATTCTGTTTGACATTGAGTTTTGTATTCAGTTCTGACATGAACATGAACGGAAACAAAGAAAAGAAAACAAAAACGTTTGGAAAAAAA]
consensusID : consensus_10663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[ACCGCGTCCGACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAGACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGGATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATGCGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTGTCATATTAATCATGGTGCTTAGCAAGGTTGAAGTGAACTTGATAAGGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACTAAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACTACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGAAATGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGATAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCATAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTTTGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATCCGGTTTGAATGAATTTGTATGTACTGAACT]
[+] EMBL AK066324 [ACCGCGTCCGACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAGACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGGATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATGCGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTGTCATATTAATCATGGTGCTTAGCAAGGTTGAAGTGAACTTGATAAGGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACTAAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACTACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGAAATGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGATAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCATAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTTTGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATCCGGTTTGAATGAATTTGTATGTACTGAACT]
consensusID : consensus_10663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[TGGAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGAGAAGCATAGGAACTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGCGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTCGAGCATAGCTTGGCGAGCACTGGGCGTGCAACCACACGAGCAGCAGAGGTATACTCGCTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAATATTGTAATTGGTGTTGTTTGAGACTGACTGATTGAGTTTTGTATTCAGTTGTGACAATGAGCATGAACGGAAACGAAGTAAAAAAAAAAAGTTTGGAGAAAAA]
[+] EMBL BI813258 [TGGAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGAGAAGCATAGGAACTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGCGCCAACTGAAAGAGAGCAGTCTCACCATGCACCAATCTGTTCAAGAAACAGAGAAGATCCTTGATTCCACCGAGAGAGCTGTCGAGCATAGCTTGGCGAGCACTGGGCGTGCAACCACACGAGCAGCAGAGGTATACTCGCTGGCTTCCAAGACGACATGCTTCCAGTGGCTGCTCATCTTCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAATATTGTAATTGGTGTTGTTTGAGACTGACTGATTGAGTTTTGTATTCAGTTGTGACAATGAGCATGAACGGAAACGAAGTAAAAAAAAAAAGTTTGGAGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10663#0 TCCCCTTCGCTGGCATCCGCTCGTCCAGACCACCGCCGCCGTCCGCCGGCCGCTTCCCCT 60
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 TCGCCGCCGGGAGCAAGATCGGCGGCGGGGGCTCGTCGGGATCTGCCCCCATCCATGGAC 120
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 TCGCTTGGCGCCGCTTCTGATTGCTCCGCCTCGCGTTGATGCGCTGCGCGCGGCATCGAG 180
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 CCACAAGGTTTTCCTCATATTAATCAATAATCATGGCGCTTAGCAAGGTTGAAGTGAACT 240
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 TGTTAAGGTTGCTTGAGGCAGCTCCTCGGCAGCAGAACCAGGCTAAACTTGTCCATTATG 300
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 TAACCACAGCCAGGGAATTGTTGGAGCAGCTAGGAGCAGAAACTACTCCAGAAGGGATAT 360
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ------------------------------------------------------------
consensus_10663#0 CAAGTGTATCAAAAGCTAAGATAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGCCC 420
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 --------------------------------------------------ACCGCGTCCG 10
consensus_10663#0 GGCTTGCTGTTCCAGAGCCAGAAAATGAAGTGCCAGTTGATGAGAATAGAGAGGTAGAAA 480
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ACCGCCGACGCGACCGGCGGCGACCCTCCCTCTTCAGCCGTTCGCCGGACTTGCGGCCAG 70
consensus_10663#0 GCTCTTATGAAGGAGAAAAGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGA 540
consensus_10663#2 ------------------------------------------------------------
consensus_10663#1 ACAGATCCCCTTCGCCGCCGGGAGCAAGATCAGGCGGTGTCCGCGGCGGGGCTCGTCGGG 130
consensus_10663#0 GACCAATAGCTCACACCGATGTTGGACCTAGCAGTCATGCGAGAAAGGATAGAGACATTG 600
consensus_10663#2 ----------------------------------------------------------TG 2
consensus_10663#1 ATCTGCCCCCATCCATGGTCGCGCGGCGCCGCTTCTGACTGCTCCGCCCCCGCGTTGATG 190
**
consensus_10663#0 GAACACCTATTAAATTGGATGCAGAAGCGCAGGCTCACATTGA----GAAGCATAGGAAG 656
consensus_10663#2 GAGTACCTATTAAATTGGATGAAGAAGCACAGGCTCATATTGA----GAAGCATAGGAA- 57
consensus_10663#1 CGCTGCCCGCGGCATCGAGCCGCAAGGTTTTTG-TCATATTAATCATGGTGCTTAGCAAG 249
** ** * * * * *** *** * * ** *** **
consensus_10663#0 CTACAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCAC---GCCAACTGAAAGAGAGC 713
consensus_10663#2 CTGCAAGAAGATCTGACTGACGAAATGGTTGAGTTAGCGC---GCCAACTGAAAGAGAGC 114
consensus_10663#1 GTTGAAGTGAACTTGATAA---GGCTGCTTGAGGCAGCTCCTCGACAGCAGAACCAGACT 306
* *** * *** ** ***** *** * * ** * *** ***
consensus_10663#0 AGTCT----CACCATGCA-------CCAATCTGTTCAAGAAACAGAGAAGATCCTTGATT 762
consensus_10663#2 AGTCT----CACCATGCA-------CCAATCTGTTCAAGAAACAGAGAAGATCCTTGATT 163
consensus_10663#1 AAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCAGAAACT 366
* ** ** *** * *** * * * *** * **** * *
consensus_10663#0 CCACCGAGAGAGCTGTTGAGCATAGCTTG-GCGAGCAC---TGGGCGTGCAGCCACGCGA 818
consensus_10663#2 CCACCGAGAGAGCTGTCGAGCATAGCTTG-GCGAGCAC---TGGGCGTGCAACCACACGA 219
consensus_10663#1 ACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATT 426
* * ** * * * ** ** * ** * ** ** * * ** *
consensus_10663#0 GCAGCAGAGGTGTACTCGTTGGCT--TCCAAGACGACATGCTTCCAGTGGCTGCTCATCT 876
consensus_10663#2 GCAGCAGAGGTATACTCGCTGGCT--TCCAAGACGACATGCTTCCAGTGGCTGCTCATCT 277
consensus_10663#1 GAAGCATTGGCTGCCCGGCTTGCTGCTCCAGAGCCAGAAAATGA-AATGCCAGTTGATGA 485
* **** ** * * * *** **** * * * * * ** * * * **
consensus_10663#0 TCATGATGACATGCATGTTCATTATGGTGGTTTTGCTCATCCGGGTCACCTGAGTT-ATA 935
consensus_10663#2 TCATGATGACCTGCATGTTCATTATGGTGGTTCTGCTCATCCGGGTCACCTAAAAT-ATT 336
consensus_10663#1 GAATAGAGAGGTAGAAAGCTCTTATGAAGGA---GATAAGCCAGGAAGTCCAATATCATT 542
** ** * * ***** ** * * * ** ** * * * **
consensus_10663#0 GCTGCGTCCGCCGAAATATTGAACTAGTATC-TGATGATTCTGTTTGACATTGAGTTTTG 994
consensus_10663#2 GT-------------------AATTGGTGTT-GTTTGAGACTGACTG--ATTGAGTTTTG 374
consensus_10663#1 ATCATCAG-GATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTCA 601
* * * * * * * ** ***
consensus_10663#0 TATTCAGTTCTGACA-TGAAC-ATGAACGGAAACAAAGAAAAGAAAAC---AAAAACGTT 1049
consensus_10663#2 TATTCAGTTGTGACAATGAGC-ATGAACGGAAACGAAGTAAAAAAAAA---AA----GTT 426
consensus_10663#1 TAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTT 661
** * * * * ** * * ** *** ** * * ***
consensus_10663#0 TGGAAAAAAA-------------------------------------------------- 1059
consensus_10663#2 TGGAGAAAAA-------------------------------------------------- 436
consensus_10663#1 TGATGAATTGTAACTGAACACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATC 721
** **
consensus_10663#0 ------------------------------
consensus_10663#2 ------------------------------
consensus_10663#1 CGGTTTGAATGAATTTGTATGTACTGAACT 751
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||