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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCACAAAACAAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGAGGAGTGCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCTTGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCCGCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGCCTTTCGTTCCTCCCCGCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCTGACATAGCCTCCCGAGAGATGCCCCTGTGGTTTCTCGGGGACACCGTGGCATTCTGTGTGTTTAAACTCTCCCGTGTGCCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTTTTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTTTATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGATACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTTANT]
[+] EMBL CA753517 [TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCACAAAACAAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGAGGAGTGCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCTTGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCCGCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGCCTTTCGTTCCTCCCCGCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCTGACATAGCCTCCCGAGAGATGCCCCTGTGGTTTCTCGGGGACACCGTGGCATTCTGTGTGTTTAAACTCTCCCGTGTGCCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTTTTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTTTATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGATACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTTANT]
consensusID : consensus_10672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 490 fasta sequence
[CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT-CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA]
[+] EMBL BE229375 [CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGACAAGGTG AAGKTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTDGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTVGCGGCGCTGAAGGAGCCC CCGCCGCGCAGGGKCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTC TC TCCTC TTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCA RRCATATCCAATTTGGAGGATTTGATTTT ]
[+] EMBL AK120891 [ aAGAGAGAATTTTGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTGAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAA ]
[+] EMBL AU166006 [ AAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGCGGCGGTNAGGACGAGGGTTGCGGCGCTTAAGGAACCCGCCGCCGCGCATGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTTCCTTTGTTTCTT ]
[+] EMBL CA755526 [ GAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCGCTTGATCTTT CTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCGATTTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA]
consensusID : consensus_10672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[TGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGCCGGCGGCGGTGAGGACGAGGGTGGCGGCNTGAAGGACCCGCCGCCGCCAGGGGCTCGCCGCCGTCGATGNTTCTTCTCCGTTNATCTTCTTTGTTTCTCTCCTCCTCTTTTTCCTTTTTTGGAAGTA]
[+] EMBL AU062618 [TGAAGACAAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGCCGGCGGCGGTGAGGACGAGGGTGGCGGCNTGAAGGACCCGCCGCCGCCAGGGGCTCGCCGCCGTCGATGNTTCTTCTCCGTTNATCTTCTTTGTTTCTCTCCTCCTCTTTTTCCTTTTTTGGAAGTA]
consensusID : consensus_10672#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence
[CGCCNCCGTCGATGGCTTNTTTCTCCGCTTGATCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATGTGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172778 [CGCCNCCGTCGATGGCTTNTTTCTCCGCTTGATCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATGTGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10672#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence
[GCGATTTCTTCACAAAGTCGATATATGTACACATCACATACTGGTAAAGAGGAAAAGAAAAAACAAAATCAAATCCTCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU175209 [GCGATTTCTTCACAAAGTCGATATATGTACACATCACATACTGGTAAAGAGGAAAAGAAAAAACAAAATCAAATCCTCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10672#1 ---------------------CGAGCTCGTGCSAATTTCGGCAGAGGRAATTTTGAAGAC 39
consensus_10672#2 -----------------------------------------------------TGAAGAC 7
consensus_10672#0 TTTTGGGGTCCCCGACCCCAAGGAACAAACTTGAACCCCCACAGAGCAAGCCAC-AAAAC 59
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 AAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGA 99
consensus_10672#2 AAGGTGAAAGTTTGAAAGGGGAGGAGCAGCAATGGCGGACATCGCGCTGCTGGTGGTGGA 67
consensus_10672#0 AAAANAATCCCCAGGCAGCAGGAATNCTTCACGAGGCCTCGTGCCGAATCGGCACGAGGA 119
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 -------------------------------------------GCGATTTCTTCACAAAG 17
consensus_10672#1 GGAGTTCGAGAAGATGACCAAGAA-GTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCA 158
consensus_10672#2 GGAGTTCGAGAAGATGNCCCAGAAAGTTNAGGCAGCAGAGNNAGCAGCAGGGCCGGATCA 127
consensus_10672#0 GGAGTGCGAGAAGATGACCAAGAA-GTTGAAGCAGCAGAGGCAGCAGCAGGGCCGGATCA 178
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 TCGATATATGTACACATCACATACTGGTAAAG-AGGAAAAGAAAAAACAAAATCAAATCC 76
consensus_10672#1 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGG-AGTGGGGTTCT 217
consensus_10672#2 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGG-AGTGGGGTTCT 186
consensus_10672#0 GCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGGAGTGGGGTTCT 238
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 TCCAAATTGGATATGGCCTGCTTCACCAAATCACTTCCCAACAAAGGAAAAAAAAAAAAA 136
consensus_10672#1 TGGG-CGGCG-GCGGC--GGTGAGGAC--GAGGGTGG--CGGCGC----TGAAGGAGCCC 265
consensus_10672#2 TGGG-CGCCG-GCGGC--GGTGAGGAC--GAGGGTGG--CGGCN-----TGAAGGA-CCC 232
consensus_10672#0 TGGGGCGGCGCGCGGCCGGGTGAGGACCAAAGGGTGGGCCGCCGCCTGATAGGGAGCCCC 298
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 173
consensus_10672#1 GCC-----GCCGCGCAGGGGC-TCGCCGCCGTCG-----ATGGC-TTCTTCTCCGCTTGA 313
consensus_10672#2 GCC-----GCCGC-CAGGGGC-TCGCCGCCGTCG-----ATGN--TTCTTCTCCG-TTNA 277
consensus_10672#0 GCCCGCCCGCCCCAAGGGGGCCTCGCCCCAACCGGACGAATGGC-CTTTCGTTCCTCCCC 357
consensus_10672#3 -----------------------CGCCNCCGTCG-----ATGGCTTNTTTCTCCGCTTGA 32
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 TCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGC 373
consensus_10672#2 TCTT-CTTTGTTTCT----CTCCTCCTCTTTTTCCTTTTTTGGAAGTA------------ 320
consensus_10672#0 GCCTCCAAAGCTTCTTTTTTTTGATTTGCCGTGCCTTGCT-GACATAGCCTCCCGAGAGA 416
consensus_10672#3 TCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGC 92
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 AGGCCATATCCAATTTGGAGGATTTGA-TTTTGTTTTTTCTTTTCCTCTTTACCAGTATG 432
consensus_10672#2 ------------------------------------------------------------
consensus_10672#0 TGCCCCTGTGGTTTCTCGGGGACACCG-TGGCATTCTGTGTGTTTAAACTCTCCCGTGTG 475
consensus_10672#3 AGGCCATATCCAATTTGGAGNAAAAAAATTTTGTTTTTTCTTTTCCTCTTTCCCAGTATG 152
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 TGATGTGTACATATATCGACTTTGTGAAGAAATCGCAACTTTTTCTCCAAAAAAAAAA-- 490
consensus_10672#2 ------------------------------------------------------------
consensus_10672#0 CCCTTTTATTTCCTCAGGCTTTTCTGGGNAAGGTAATTTCTNACCAATTCTGANGGGTTT 535
consensus_10672#3 TGNTGTGTACATATATCGACTTTGTGAAGAANTCGCACNTTTTTTTCCCAAAAAAAAAAA 212
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 ------------------------------------------------------------
consensus_10672#2 ------------------------------------------------------------
consensus_10672#0 TTTTCTCCACGCGATACACCAAAAACGTGCGTGGTTCGGCGGCTCATCCTCCCGTTGCTT 595
consensus_10672#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 256
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 ------------------------------------------------------------
consensus_10672#2 ------------------------------------------------------------
consensus_10672#0 TATATTNCGTCCCCTTACTCGATTTGCTTGTGTTCCCGGCTGNCTCNNNGNNTCGTAGGA 655
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 ------------------------------------------------------------
consensus_10672#2 ------------------------------------------------------------
consensus_10672#0 TACTCGGGTTNCTTTNCNCNCCATANGCCGGTTTATTNTTNCNACNCGCGCCTAGTNNTT 715
consensus_10672#3 ------------------------------------------------------------
consensus_10672#4 ------------------------------------------------------------
consensus_10672#1 ---
consensus_10672#2 ---
consensus_10672#0 ANT 718
consensus_10672#3 ---
consensus_10672#4 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||