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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 728 fasta sequence
[TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT-GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA-CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA]
[+] EMBL CF301957 [TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTA ]
[+] EMBL AK058649 [ AGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAAT ]
[+] EMBL CF295130 [ GCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCATCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTT ]
[+] EMBL AU058249 [ GACGCCTCCTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCATGGATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA ]
[+] EMBL CA753424 [ CTCCCCCGGCCACGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGCTCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATGATTGCATGGTATTTTGTGTTTTTGGAGGAGCTGTGGTTTC ATTTTAGCTGGGATGTGGAGATACGAGTCTGGCCAGTGCCAGTGGTTACTCTCAGGGTGCTGCCCTTGTCCTGACAGAAGTGATACTATGG TGCACCCATTTATTGGTTATGGTGTGTATTGAACTGTCTATGTCCACATGGCt ]
[-] EMBL CF295131 [ CGGGTAGCGCCATGTCGGCGCTATTCAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAAGATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTACTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACTGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCA CCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCATAAAAAAA]
[+] EMBL AU101471 [ CCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGATATCCACTATTTTCTTCTGAGGCCTTCAT GATTTTAATCCAGGCTGCAGAAGATTTGTAGGAAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTAT GTTGCA CCATTTAAaaaaaa ]
consensusID : consensus_10678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA]
[-] EMBL OS31698 [ACCCGGGGACCCCGGGGCTTGCCAGGGTAACCACATTCCTCGAGGCCTCATGATTTAACCAGGCGCAGAAGAATTGTAGGAAGAACAGTGTGATAATAATGCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAATTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGTGCCCTTGTCAGGAAAGAAGTGATACTATGGTGCACCATTTAATGGTTATGTTGTGTATTGAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATTGCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCATAATTGAGCAGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10678#0 TCACCCAGTCGCCCGACCGGCCTCCTCTCCTGGCCACGGCGACGCCTCCTCCCCCGGCCA 60
consensus_10678#1 ------------------------------------------------------------
consensus_10678#0 CGCCGCGAATACCTTGGGTCTCTGCAATAGTCCAATACCGATCTGCGGCAGCTACTCTGC 120
consensus_10678#1 ------------------------------------------------------------
consensus_10678#0 TCGTGGAGGAGAGCCGCCGCCGGAAGCCGGAAGGCCGGGTAGCGCCATGTCGGCGCTATT 180
consensus_10678#1 ------------------------------------------------------------
consensus_10678#0 CAACTTCAATTCGTTCCTGACCGTGGTGCTGCTGGTGATCTGCACCTGTACCTACATCAA 240
consensus_10678#1 ------------------------------------------------------------
consensus_10678#0 GATCCAGTTCCCCGCCATCCTCAACGACCGCACCGGATTCCGTGGTTTCTTTTGGAAAGC 300
consensus_10678#1 ------------------------------------------------------------
consensus_10678#0 AGCCAGAATAGGTGAACGCTTAAGCCCGTGGGTAGCTCTTGGGTGCTTTGCCATGGGGAT 360
consensus_10678#1 -----------------------ACCCGGGGA---CCCCGGGG---CTTGCCA---GGGT 28
**** ** * * *** ****** ** *
consensus_10678#0 ATCCACTATTTTCTTCTGAGGCCTTCATGATTTTAATCCAGGCTGCAGAAGATTTGTAGG 420
consensus_10678#1 AACCACATTCCTC----GAGGCCT-CATGATTTAA--CCAGGC-GCAGAAGAATTGTAGG 80
* **** * ** ******* ******** * ****** ******** *******
consensus_10678#0 AAGAACAGTGTGATTATTATTGCATTGTTTTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 480
consensus_10678#1 AAGAACAGTGTGATAATAAT-GCAATGGATTTTGTGTTTTTGGAGGAGCTTTTGTTTCAA 139
************** ** ** *** ** *******************************
consensus_10678#0 TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 540
consensus_10678#1 TTTTAGCTGGGATGTGGAGATACGAGTCTGGCAAGTGCCAGTTGTTACTCTCAGGGTGGT 199
************************************************************
consensus_10678#0 GCCCTTGTCAGGAAAGAAGTGATACTATGGTTGCACCATTTAATGGTTATGTTGTGTATT 600
consensus_10678#1 GCCCTTGTCAGGAAAGAAGTGATACTATGGT-GCACCATTTAATGGTTATGTTGTGTATT 258
******************************* ****************************
consensus_10678#0 GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 660
consensus_10678#1 GAACTGTTTATGTGCACATGGCATGTTCAGAAAATGCTTAAATGCTCCTAACAGGATATT 318
************************************************************
consensus_10678#0 GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGATGCACTGTCAGCA 720
consensus_10678#1 GCTATTTCTCAGATTCTGCTTAATGCTATATGGATGCGCAGGTTTGCTGCACTGTCAGCA 378
********************************************** *************
consensus_10678#0 TAAAAAAA------ 728
consensus_10678#1 TAATTGAGCAGTTA 392
*** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||