These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 962 fasta sequence [AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG-ACCCGGTGGA-CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT-GACGGA--GGGG-CCCGAGCCCGAGT-CCAAGCCCATGGG-CCGGGCCCAGGGGCTGTACAT-GGGCTCAGACCA-GGCCAAGCTGGG-CTTCCTCC-AGGCAA-TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAGACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAGTGGGAGCTTTGTT] [+] EMBL AK060077 [AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAGACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAGTGGGAGCTTTGTT] [+] EMBL OSC8201 [ CTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATNGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCTNGACGGAGGGGGG CCCGAGCCCGAGT CCAAGCCNATGGGCCCGGGCCCAGNGGTTGTACATGGGGCTCAGAACAGGGCAAAGTTGGGNTTTTCTCCAAGGGAATTGAACC ] [+] EMBL CF278089 [ TCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT AACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTG ] [+] EMBL OSS10616A [ AGCTTGGTTGCTCACATTGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGG CCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTNTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTNCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGTTGTACAT GGGCTCAGACCA GGCCAAGNTGGG TTTCTCC AGG AA TTAACCTGGTGTTaa ] [+] EMBL CA756453 [ TGAGCTCAACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCGAGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCACCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCAGTGCGGGTGGTGG ACCCGGTGGA CCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTCATGGACGATCCGCT GACGGA GGGG CCCGAGCCCGAGT CCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACCTGGTGTTCACCGACGGCACCTACNACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCTTTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAA ] [+] EMBL AU085990 [ gnCAGTGCGGTTGTTGGAACCCGGTGGACCCCGTCNTCGCGGTCCTTCTTTGGGATGATCAA NTCATGGACGATCCGCT GACGGA GGGGCCCCGAGCCCGANTCCCAAGCCCATGGG CCGGGCCCAGGGGCTGTACAT GGGCTCAGACCA GGCCAAGCTGGG CTTCCTCC AGGCAA TGAACTTGGTGTTCACCGACGGCA CTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAA TG CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCCGTTCGCCCGC GCTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAaaaaaa ] consensusID : consensus_10680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GGGGGTGTCCCCCTGATTTCCCTCCNGGATGGTTCCCANAAAGCTGCCCCCATTGGGCCGGGCCCCATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCTGTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCGCCGCACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACACAAGATGGAGACGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTGTTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTCAGTAACACACTATACCGAAGAACACAGACACTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA] [+] EMBL BI806998 [GGGGGTGTCCCCCTGATTTCCCTCCNGGATGGTTCCCANAAAGCTGCCCCCATTGGGCCGGGCCCCATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCTGTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCGCCGCACTGCCCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCGCCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTCTACGTCATGCACTGATCACACAAGATGGAGACGATGCTTCACACAAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTGTTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAGTCTTTCAGTAATAACTTTCTTGGTTCAGTAACACACTATACCGAAGAACACAGACACTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA] consensusID : consensus_10680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCATGGGCCGGGCCCAGGGGGCTGTACATGGGTCAGACCAGGCCAAGCTGGGCTTCCTCCAGGCAATGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGTTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAAAAAAAAAAAAAAA] [-] EMBL CF278090 [CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCATGGGCCGGGCCCAGGGGGCTGTACATGGGTCAGACCAGGCCAAGCTGGGCTTCCTCCAGGCAATGAACCTGGTGTTCACCGACGGCACCTACAACGGCAGCGTGGTCACCGTGCTCGGCCGCAACTGCCCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGGTTACGCCCAGGCCAGGACGCACACCCTGGACCTCAAGACCGGCGACGCCATTGTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACACAAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAATAATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACAGGGGAGTTTAGTTGCTGCAGTGTTGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTGGTTTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10680#0 AGTAGTGACACTCACTCACACGATAGCAAGAAGCTAGCTTGGTTGCTCACATTGAGCTCA 60 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ------------------------------------------------------------ consensus_10680#0 ACAATGGAGGCCAAGGGAGTGGTGGTGATCACCCTTGTGGTCACACTTGCGGCGGTTGCG 120 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ------------------------------------------------------------ consensus_10680#0 AGGGCGGCCCGCCCAGAAGAAACCAGGCCGGGCTTGGCCCGCCGCGGGTCAGCATCCTCA 180 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ------------------------------------------------------------ consensus_10680#0 CCGACGACTCACCTGCACTTCTACTTCCACGACAAGGTGAGCAAGCCATCACCGACGGCA 240 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ------------------------------------------------------------ consensus_10680#0 GTGCGGGTGGTGGACCCGGTGGACCCGTCATCGCGGTCCTTCTTTGGGATGATCAACGTC 300 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ---------------------------------------------------GGGGGTGTC 9 consensus_10680#0 ATGGACGATCCGCTGACGGAGGGGCCCGAGCCCGAGTCCAAGCCCAT-GGGCCGGGCCCA 359 consensus_10680#2 ---------CCGCTAACGGAGGGGCCCGAGCCCGAGTCCAAGCCCAT-GGGCCGGGCCCA 50 consensus_10680#1 CCCCTGATTTCCCTCCNGGATGGTTCCCAN---AAAGCTGCCCCCATTGGGCCGGGCCCC 66 * ** *** ** ** * * * ***** *********** consensus_10680#0 GGGG-CTGTACATGGGC-TCAGACCAGGCCAAGCTGGGC-TTCCTCCAGGCAATGAACCT 416 consensus_10680#2 GGGGGCTGTACATGGG--TCAGACCAGGCCAAGCTGGGC-TTCCTCCAGGCAATGAACCT 107 consensus_10680#1 ATGGGCTGTACATGGGCTTCAGACCAGGCCAAGCTGGGCGTTCCTCCAGCCAATGGACCT 126 ** *********** ********************* ********* ***** **** consensus_10680#0 GGTGTTCA-CCGACGGCACCTACAAC-GGCAGCGTGGTCACCGTGCTCGGCCGCAACTGC 474 consensus_10680#2 GGTGTTCA-CCGACGGCACCTACAAC-GGCAGCGTGGTCACCGTGCTCGGCCGCAACTGC 165 consensus_10680#1 GTTGTTCATCCGACGCACNTTACTTCTGGCAGCGTGGTCACCGTGCTCG-CCGCA-CTGC 184 * ****** ****** *** * ********************** ***** **** consensus_10680#0 CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGC-GGCACCGGCGCCTTCCGC-TTCG 532 consensus_10680#2 CCCTTTGACGACGTCCGGGAGATGCCGGTGATCGGC-GGCACCGGCGCCTTCCGC-TTCG 223 consensus_10680#1 CCCTTCGACGACGTCCGGGAGATGCCGGTGATCGGCTGGCACCGGCGCCTTCCGCGTTCG 244 ***** ****************************** ****************** **** consensus_10680#0 CCCGCGGCTACGCCCAGGCCAGGACGCACACCC-TGGACCTCAAGACCGGCGACGCCATT 591 consensus_10680#2 CCCGCGGTTACGCCCAGGCCAGGACGCACACCC-TGGACCTCAAGACCGGCGACGCCATT 282 consensus_10680#1 CCCGCGGCTACGCCCAGGCCAGGACGCACACCCCTGGACCTCAAGACCGGCGACGCCATT 304 ******* ************************* ************************** consensus_10680#0 GTCGAGTACAACGTCTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACAC 651 consensus_10680#2 GTCGAGTACAACGTTTACGTCATGCACTGATCACAACAAGATGGAGATGATGCTTCACAC 342 consensus_10680#1 GTCGAGTACAACGTCTACGTCATGCACTGATCACA-CAAGATGGAGACGATGCTTCACAC 363 ************** ******************** *********** ************ consensus_10680#0 AAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 711 consensus_10680#2 AAAGCGTTTGCATTTCTTTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 402 consensus_10680#1 AAAGCGTTTGCATTTCTCTGAATTTTTCACAAGAGTGTTTTTGCCTTCTCCTCTGAAAAT 423 ***************** ****************************************** consensus_10680#0 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACAC-AGGGGAGTTTAGTTGCTGCAGTG 770 consensus_10680#2 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACAC-AGGGGAGTTTAGTTGCTGCAGTG 461 consensus_10680#1 AATGGCCCTTGTTGAAAGTGATTCACTCAAGAACACCAGGGGAGTTTAGTTGCTGCAGTG 483 ************************************ *********************** consensus_10680#0 TT-GATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 829 consensus_10680#2 TT-GATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 520 consensus_10680#1 TTCGATCTTGATACAAAAAAAATGGAGTTCTAGAATCTCTATAAAAGGTGGTTCTTCTTG 543 ** ********************************************************* consensus_10680#0 GTTTAGTCTTTCAGTAATAACTTTCTTGGTTGCAGTAACACACTATACCGAAGAACACAG 889 consensus_10680#2 GTTTAAAAAAAAAAAAAAA----------------------------------------- 539 consensus_10680#1 GTTTAGTCTTTCAGTAATAACTTTCTTGGTT-CAGTAACACACTATACCGAAGAACACAG 602 ***** * ** * consensus_10680#0 ACAACTTTTAGTTGCAGGCTTAACAAACTTCTGTCATATAATCCTGATTTCTTAAACCAG 949 consensus_10680#2 ------------------------------------------------------------ consensus_10680#1 ACA-CTTTTAGTTGCAGGCTTAACAACTTCTNNTCATATAAAAAAAAAAA---------- 651 consensus_10680#0 TGGGAGCTTTGTT 962 consensus_10680#2 ------------- consensus_10680#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||