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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1377 fasta sequence
[AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACATTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCAAGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAACAGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGTTCATTACTTCTAGAACTTGGCCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGGACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTTTGTTCCAGGAACAGGATCTGTTCAAGTGGGCCCAATATTTTCTAGTCTTACTTCACATCGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT]
[+] EMBL CB671050 [AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAAC ]
[+] EMBL CF322892 [ AAAAATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAAT ]
[+] EMBL CB673379 [ CCCCGTCTCCTCT CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCCTGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACG ]
[+] EMBL CB639676 [ GATGTTCACATGTCACATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGTC ]
[+] EMBL CB623306 [ GTGCAACCCTCA ATTGTGCTGAGGACTTGAATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGCGTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAATATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCCTCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGACAATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCCGCTCGTCGTCGTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTGAACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTTCGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAAATGGTGTCAGGGCTGTACTTGATCAAATGCCGGTTCCACCACTTTTCCAGTCTGAAACGTCAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACATTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTA ]
[-] EMBL CA882879 [ ATGGAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCAAGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAACAGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGTTCATTACTTCTAGAACTTGGCCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGGACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTTTGTTCCAGGAACAGGATCTGTTCAAGTGGGCCCAATATTTTCTAGTCTTACTTCACATCGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT]
consensusID : consensus_10686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence
[AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCATTGTCTCATAGATTCCGACATTCAT]
[+] EMBL CB640025 [AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCATTGTCTCATAGATTCCGACATTCAT]
[+] EMBL CB639624 [AATGGTCTTACCTTGACTTTTATCTGAGTTGCCCACATTCTGAATCAGTCTGAAAATTTAGTTATTTACTTCCAATACTCTTTACAGGACAAACTCTGAATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATCATGAAAGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACTATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGTCCGTGCCATTTTTTTATTTTTTCTCGTTATGAATTAGCTAATATAACAGTTATGTTTTAGCTTCATGAATAGTTTGATCTCTTTTCTGTTTGTTCTTGCTGAGTTGAGAATACTATGCATGTAGCTATTATTCTTCAATGATAGGGAAAGTATTAGTGAAGTTAGATATATCAATTTGAGCTATTTGATTGAGGGTAATATGGTAAATGTTTCATTGGGTACAACA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10686#0 AAAGAAACATCTCCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGG 60
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 GGAGGGGGAGGGGCGCCGATCTCCATCCGACGAGCAGAGCAGGGGAGGGGAGGGGGATCC 120
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 TGGAGATCATGGAGAGTAGTTCTTCAGATGTTCAAATGTCACATTGTGCTGAGGACTTGA 180
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 ATAGTGAGAGTACAATCGAGATCAAAATAAAGACATTGGATTCTCAAACATACAATTTGC 240
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 GTGTCAATAAACGCGTGCCAGTGCCTCTGCTAAAGGAAAAAATTGCCACTGTAACTGGAA 300
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 TATTGTCTGAGCAACAACGTCTGATTTGCCGTGGGAGAGTTCTAAAGGATGATGAACTCC 360
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 TCTCTGCGTATCACGTGGAAGATGGCCATACATTGCATCTCGTGGTTAGACAACCAGGAC 420
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 AATCCGCTACATCAGGAAATGCTGGAAATGAAGGTACCACATCAAATCCTGCTCGTCGTC 480
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 GTGGTCCCACTATGACTCGCAGTATTGTACTTGAGGCTATTAATGTGGGTCAGGGGAGTG 540
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 AACTCAGTGTTGCACAGTTGCTCCAAAGCCTGCTTCGAGCTCCTAGTAGCACACAAGTTT 600
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 CGAGTGGACCAGCACCTTCTGATGCCAGACCTTCAGAAGGTGCACAATCTTCAACGCAAA 660
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 ATGGTGTCAGGGCTGTACTTGATCAAATGCTGGTTCCTCCACTTTTCCAGTCTGAAACGT 720
consensus_10686#1 ------------------------------------------------------------
consensus_10686#0 CAGTTGGGTTATCAGAACCAAACGTCATTCCTGATTCGTTGACCACAATTTCTCAGTACA 780
consensus_10686#1 ------AATGGTCTTACCTTGAC-TTTTATCTGA---GTTGCCCACA--TTCTGAATCAG 48
* ** * * ** * * **** **** ***** **** * *
consensus_10686#0 TTAACTTTTTGAGAGACTCCTTTAGAAGGGAAGGCTTCCTCGAAAATGGACAAACTCTGA 840
consensus_10686#1 TCTGAAAATTTAGTTATTTACTTCCAA---------TACTCTTTACAGGACAAACTCTGA 99
* ** ** * * ** ** * *** * *************
consensus_10686#0 ATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAATTCATGAA 900
consensus_10686#1 ATAATGCTGACCATGGAACTGCAGGAAGTGCCCATGGAGGTGGTACTCAAAAT-CATGAA 158
***************************************************** ******
consensus_10686#0 AGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACT 960
consensus_10686#1 AGCCAGCCTGATTCAGCTTCGGCGCATGGGCTTCCTACTGCAGCATTGCTTGCTGAAACT 218
************************************************************
consensus_10686#0 ATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTCAACTACCA 1020
consensus_10686#1 ATGCACTCTACTAGACAACTTCTTGTTGAGCATGCTGGAGCATTGCTATCTGT----CCG 274
*************************************************** **
consensus_10686#0 AGCCAGCTAGGAGATATTGTGAATGTAACTGATGCTACAACACGGAGGAACCTTCAAAAC 1080
consensus_10686#1 TGCCATTT---------------TTTTATTTTTTCT-CGTTATGAATTAGCTAATATAAC 318
**** * * * * * * ** * * * * * * * ***
consensus_10686#0 AGTGTAGTCAGATATGGAGTTCTCATCCAATACCTTGGT-TCATTACTTCTAGAACTTGG 1139
consensus_10686#1 AGTT-------ATGTTTTAGCTTCATG-AATAGTTTGATCTCTTTTCTGTTTGTTCTTGC 370
*** ** * **** **** *** * ** ** ** * * ****
consensus_10686#0 CCGCACGACAATGATGCTGCGTATAAATCCTGCAACTTCAGAAGCGGTTGTCAATTCTGG 1199
consensus_10686#1 TGAGTTGAGAATACTA-TGCATGTAGCTATTATT-CTTCAATGATAGG-GAAAGTATTAG 427
** *** * *** * ** * * ***** * * * * * *
consensus_10686#0 ACCAGCTCTTTTTATCTCTCCATCTGGACCAAATCCTCTTATGGTTCAACCTGCTCCTTT 1259
consensus_10686#1 TGAAG----TTAGATATATCAATTTGAGCTA--TTTGATTGAGGGTAATATGGTAAATGT 481
** ** ** * ** ** ** * * * ** ** * * * * *
consensus_10686#0 TGTTCCAGGAACAGGATCTGT-TCAAGTGGGCCCAAT-ATTTTCTAGTCTTACTTCACAT 1317
consensus_10686#1 TTCATTGGGTACAACATATGAGTTTGGCAGGTCCAATCACCCTCCA---TTGTCTCATAG 538
* ** *** ** ** * * ** ***** * ** * ** *** *
consensus_10686#0 CGCTCTGTTCTGCACCCAAGAGATATTGACATCCATGTCCGCACGAGTGGGTCTGTGTCT 1377
consensus_10686#1 -ATTCCGACATTCAT--------------------------------------------- 552
** * * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||