cluster # 10692

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10692 cluster # 10692 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10692#0 length = 731 sequences # 6

consensus_10692#1 length = 600 sequences # 2

consensusID : consensus_10692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 731
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA-CCATTGCGAGGATGAGAAGAGGGA-GAAGCTTCATGGTGAAAGGGA-GAAATTGGGGGA-TCTGGGAAGA-AGAATGAAGTCAATGTGAAATGACAC-TTTGGAGATTGGGA-GAGGG-AACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTA-ATTTGGTTTGACTAATGGTTCCC]

[-] EMBL CA754878             [TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCAT                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI305810             [                                    AGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACANACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTA ATTTGG                 ]
[+] EMBL CB964555             [                                     GAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCTAGGGAGAGGTGTACTTA                               ]
[+] EMBL BU673590             [                                                                          CAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTACGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCCATTGCGAGGATGACAAGAGGGACGAAGCTTCATGGTGAAAGGGACGAAATTGGGGGACTCTGGGAAGACAGAATGACGTCAATGTGACATGACACTTTTGGAGATTGGGACGAGGGAAACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTACATTTGGTTCGACTACTGGTTCCC]
[-] EMBL AU166251             [                                                                                                                                                                tttttGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCG GTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTTCACCACGCCGTGCGCCAG AGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGCCGAA GTGTGNGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCAAGGGAGAGGTGTACTTTGTTGGTA ATTTGGTTTGACTAAT       ]
[-] EMBL AU031285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGTCCCTTCCGCCGTCGTCNTCTTCACCACGCCGTGCGCCAGCAGCGCCTCNTCCCCCGGCGCCGTGCGAGAANTGNCGGCGCCGAAGGCGTTGGCCATGA CCATTGCGAGGATGAGAAGAGGGA GAAGCTTCATGGTGAAAGGGA GAAATTGGGGGA TCTGGGAAGA AGAATGAAGTCAATGTGAAATGACAC TTTGGAGATTGGGA GAGGG AACAAACCCTAGCAAGGGAGAGGTGTACTTTGTTGGTA ATTTGGTTTGACTAAT       ]




>consensus_10692#0
TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCATGTAGGGAC
GTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATAC
AGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCAT
CTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTA
CATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATA
TACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTT
GTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGT
ACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGTCGTCGTCT
TCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGTGACGGCGC
CGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCATGGTGAAAG
GGAGAAATTGGGGGATCTGGGAAGAAGAATGAAGTCAATGTGAAATGACACTTTGGAGAT
TGGGAGAGGGAACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTAATTTGGTTTGAC
TAATGGTTCCC

consensusID : consensus_10692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 600
fasta sequence

                              [GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT]

[+] EMBL CB967485             [GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCATGTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGGTTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTACAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCAGCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGTCGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGTGACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT]
[-] EMBL CA754831             [                                                                                                                                                                                            CTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGATACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGCTATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGGCTGAGCTTGTTCGCTCCCAATGTCAT                                                                                                                                                                                                                      ]




>consensus_10692#1
GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCAT
GTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGG
TTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTA
CAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGAT
ACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGC
TATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGG
CTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCA
GCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGT
CGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGT
GACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10692#0      --------TTTTTTTTTTTTTTTTTTTTNTTTTTTGAGAAAACAAGAACTCTCCCTTCAT 52
consensus_10692#1      GGGAATAGCTGCGGTCGTCTGTATTGAGTTTGATTGAGAAAACAAGAACTCTCCCTTCAT 60
                                *    *  * * * **    **  ***************************

consensus_10692#0      GTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGG 112
consensus_10692#1      GTAGGGACGTATAAATTTTATTCAGTATTTAATTAATTAACATTAGTACACGTGATGAGG 120
                       ************************************************************

consensus_10692#0      TTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTA 172
consensus_10692#1      TTAAATACAGTTAAACACTTTTACATGAGCAATACAAATATACAATCACTGTAGAAACTA 180
                       ************************************************************

consensus_10692#0      CAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGAT 232
consensus_10692#1      CAAAGCATCTTCGAATTATCATGCAACCACAACTAGAGCCACAACCGTACATATATGGAT 240
                       ************************************************************

consensus_10692#0      ACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGC 292
consensus_10692#1      ACTAGCTACATGCAATCAAGCGTACGTAATAAGTGTATAACCCATGGCTTGCAAGCTTGC 300
                       ************************************************************

consensus_10692#0      TATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGG 352
consensus_10692#1      TATGTATATACGTACAGGACATGGGTAGAGCTGGGTAAGCTGCATCTAGCTCGATCATGG 360
                       ************************************************************

consensus_10692#0      CTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCA 412
consensus_10692#1      CTGAGCTTGTTCGCTCCCAATGTCATGGCCACTCCCCGGCATGTTCCCCGGGCTGCTCCA 420
                       ************************************************************

consensus_10692#0      GCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTTGTCGATGGACGTCCCCTCCGCCGT 472
consensus_10692#1      GCTGTCGTACTCCGGCCGCGGTATCGCGTGGTGGTCGTCGATGGACGTCCCCTCCGCCGT 480
                       *********************************** ************************

consensus_10692#0      CGTCGTCTTCACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGTGCGAGAAGT 532
consensus_10692#1      CGTCGTCTACACCACGCCGTGCGCCAGCGGCGCCTCCTCCCCCGGCGCCGAGCGAGAAGT 540
                       ******** ***************************************** *********

consensus_10692#0      GACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT 592
consensus_10692#1      GACGGCGCCGAAGGCGTTGGCCATGACCATTGCGAGGATGAGAAGAGGGAGAAGCTTCAT 600
                       ************************************************************

consensus_10692#0      GGTGAAAGGGAGAAATTGGGGGATCTGGGAAGAAGAATGAAGTCAATGTGAAATGACACT 652
consensus_10692#1      ------------------------------------------------------------
                                                                                   

consensus_10692#0      TTGGAGATTGGGAGAGGGAACAAACCCTAGCTAGGGAGAGGTGTACTTAGTTGGTAATTT 712
consensus_10692#1      ------------------------------------------------------------
                                                                                   

consensus_10692#0      GGTTTGACTAATGGTTCCC 731
consensus_10692#1      -------------------