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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1836 fasta sequence
[CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTCCGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGCCGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACCCCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGTGAGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCACGCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCTGACCTGGATTTTTTTATTGGTGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTACACTAGAAAACACCCAATTAATCATGGTCAGGTTGATGACTGGGATACAATGGAAAGATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCTTCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTTTGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGCTGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTTGATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGTAGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTACAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAAGAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAGCCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACAATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCAATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTTAAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCCGCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCATCCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTTTATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACCAGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGAGTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATCCAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTCTGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATGTTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCACAACATT]
[+] EMBL AK103383 [CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTCCGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGCCGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACCCCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGTGAGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCACGCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCTGACCTGGATTTTTTTATTGGTGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTACACTAGAAAACACCCAATTAATCATGGTCAGGTTGATGACTGGGATACAATGGAAAGATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCTTCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTTTGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGCTGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTTGATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGTAGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTACAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAAGAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAGCCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACAATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCAATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTTAAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCCGCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCATCCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTTTATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACCAGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGAGTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATCCAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTCTGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATGTTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCACAACATT]
consensusID : consensus_10706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1823 fasta sequence
[CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACA-CCCTGTTTTG-CCGCTAATCCA-CGTCATGCCAATTTTCCA-TGAGAAACA-GAGAGAACATCATGTAATTTTGAACAGTTGATCA-CTGAAACTCCA-CTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT]
[+] EMBL AK120428 [CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGATTTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACA CCCTGTTTTG CCGCTAATCCA CGTCATGCCAATTTTCCA TGAGAAACA GAGAGAACATCATGTAATTTTGAACAGTTGATCA CTGAAACTCCA CTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT]
[+] EMBL CA765625 [ GGTGGTGATATAGCTGTCTCTTCCGTTGTT AAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAATCTCTGGAGAGTGGCTCAGTAGAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACCTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGNTGGTCTCTCTTGAGGATTTCCTGATGAACA CCCTGNTTTG CCGCTAATCCA CGTCATGCCAATTTTNCA TGAGAAACA GAGAGAACATCATGTAATT ]
[+] EMBL BM420775 [ GGGCTATCACATCTC AACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACACCCCTGTTTTGCCCGCTAATCCACCGTCATGCCNATTTTCCACTGAGAAACACGAGAGAACATCATGTAATTTTGAACAGTTGATCANCTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTT ]
consensusID : consensus_10706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1134 fasta sequence
[CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTATGTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN]
[+] EMBL CB677511 [CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTA ]
[+] EMBL CF196988 [ CCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTATGTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN]
consensusID : consensus_10706#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAGTGAAAGTCCAGGGGCTTCAACACAAAAAGGACTAATAAGAACTATGGGTCAAATGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGGACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTAACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTTGTAGTTCTCAGATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCTGGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGACCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAACTAATGTTTTGGCCGGAACCACAACGGTCTTGCTAAGCACGAAGAGCACAAGTGTTAATTCGAGCATCAGAATTGTATTTAGGAATGTCCGATCAACGATCCAGCCAAATATCGTGATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGACATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAGAGACTCCA]
[+] EMBL CB677512 [TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAGTGAAAGTCCAGGGGCTTCAACACAAAAAGGACTAATAAGAACTATGGGTCAAATGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGGACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTAACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTTGTAGTTCTCAGATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCTGGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGACCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAACTAATGTTTTGGCCGGAACCACAACGGTCTTGCTAAGCACGAAGAGCACAAGTGTTAATTCGAGCATCAGAATTGTATTTAGGAATGTCCGATCAACGATCCAGCCAAATATCGTGATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGACATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAGAGACTCCA]
consensusID : consensus_10706#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[CCCACTGGATGGGGCCTATCACATCTCAAACCATTCTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCTATTTGCCACCCANTGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGGATGCTGTCTGGAGGGATTGAAAATCATGCTGGCTGGGATGCTGAGAACTACACAGGGTTGGGTGCTCTGCTTGGAGGGATGTTCCTGGATGGAACCCCCTGGTGTTTGCGCCGCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGAAACCACGAGAGAACATGCATGGTGAATTTTGGAACAGTGGGATGCACTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGGCTGTAGGCTTCTGCCTGTCTTT]
[+] EMBL BM038037 [CCCACTGGATGGGGCCTATCACATCTCAAACCATTCTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCTATTTGCCACCCANTGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGGATGCTGTCTGGAGGGATTGAAAATCATGCTGGCTGGGATGCTGAGAACTACACAGGGTTGGGTGCTCTGCTTGGAGGGATGTTCCTGGATGGAACCCCCTGGTGTTTGCGCCGCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGAAACCACGAGAGAACATGCATGGTGAATTTTGGAACAGTGGGATGCACTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGGCTGTAGGCTTCTGCCTGTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10706#1 CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGC 60
consensus_10706#2 -------------------------CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGC 35
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 -----------------------CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTC 37
consensus_10706#1 CTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGT 120
consensus_10706#2 CTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGT 95
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 -TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAG 59
consensus_10706#0 CGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGC 97
consensus_10706#1 CGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCG-GGCGCGGG- 178
consensus_10706#2 CGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCG-GGCGCGGG- 153
consensus_10706#4 ------------------------CCCACTGGATGGGGCCTATCACATCT-CAAACCATT 35
consensus_10706#3 TGAAAGTCCA----GGGGCTTCAACACA---AAAAGGACTAATAAGAACTATGGGTCAAA 112
consensus_10706#0 CGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACC 157
* *
consensus_10706#1 CGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGG 238
consensus_10706#2 CGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGG 213
consensus_10706#4 CTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCT 95
consensus_10706#3 TGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGG 172
consensus_10706#0 CCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGC 217
* *
consensus_10706#1 GCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGG-GCGGCGTCCGCGCTCGCCGTGCTGG 297
consensus_10706#2 GCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGG-GCGGCGTCCGCGCTCGCCGTGCTGG 272
consensus_10706#4 ATTTGC--CACCCAN--TGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGG 151
consensus_10706#3 ACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTA- 231
consensus_10706#0 GGAGGAGGAGGCGTG--AGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCAC 275
* *
consensus_10706#1 GCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCG--TGCCGCGGGCGCGGGAGGGG 355
consensus_10706#2 GCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCG--TGCCGCGGGCGCGGGAGGGG 330
consensus_10706#4 ATGCTGT-CTGGAGGGATTGAAAATCATGCTGGCTGGGA-TGCTGAGAAC-TACACAGGG 208
consensus_10706#3 ACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCG-AGATTTACTC-TGCCGACTT 289
consensus_10706#0 GCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAA 335
* * *
consensus_10706#1 TTGCGA----CGAGTTCGAGGTGGAGGT--GTTCGAGGTGTGCGTGCTTCTGTCGCAGGC 409
consensus_10706#2 TTGCGA----CGAGTTCGAGGTGGAGGT--GTTCGAGGTGTGCGTGCTTCTGTCGCAGGC 384
consensus_10706#4 TTG-GG----TGCTCTGCTTGGAGGGAT--GTTCCTGG-ATGGAACCCCCTGGTGTTTGC 260
consensus_10706#3 CTCCAC----TCCTCTACCTGAACTAATT-GATAGCTGTGTTCAATCTTGTAGTTCTCAG 344
consensus_10706#0 CTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCA 395
* * * * *
consensus_10706#1 GGC--GGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTC 467
consensus_10706#2 GGC--GGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTC 442
consensus_10706#4 GCC--GCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGA-AACCACG-AGAGAACA 316
consensus_10706#3 ATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCT 404
consensus_10706#0 GTC--AGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCT 453
* * * *
consensus_10706#1 CGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAG-AAGGAGTA 526
consensus_10706#2 CGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAG-AAGGAGTA 501
consensus_10706#4 TGCATGGTGAATTTTG--GAACAGTGGGATGCACTGAAACTCCACCTCTAG-GCTGTGCG 373
consensus_10706#3 GGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGA 464
consensus_10706#0 GACCTGGATTTTTTTATTGG-TGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTA 512
* * * * ** ** *
consensus_10706#1 CGTCGCTAAGA----------TCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGC 576
consensus_10706#2 CGTCGCTAAGA----------TCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGC 551
consensus_10706#4 CTGTGCATAGA----------GCCAG--CTTCATCCATGTAAATTGGCTGTAGGCTTCTG 421
consensus_10706#3 CCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAA 524
consensus_10706#0 CACTA-GAAAACACCCAATTAATCATGGTCAGGTTGATG--ACTGGGATACAATGGAAAG 569
* * * * * *
consensus_10706#1 CATGCTTTGTTGTGAAGGTCACACGAGAAATGT---TCCGTTTCTCCCATATCTTCCAAG 633
consensus_10706#2 CATGCTTTGTTGTGAAGGTCACACGAGAAATGT---TCCGTTTCTCCCATATCTTCCAAG 608
consensus_10706#4 CCTGTCTTT--------------------------------------------------- 430
consensus_10706#3 CTAATGTTTTGGCCGGAACCACAACGGTCTTGC---TAAGCACGAAGAGCACAAGTGTTA 581
consensus_10706#0 ATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCT 629
consensus_10706#1 AGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGT-ATCTG 692
consensus_10706#2 AGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGT-ATCTG 667
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ATTCGAGCATCAGAAT-TGTATTTAGGAATGTCCGATCAACGATCCAGCCAAAT-ATCGT 639
consensus_10706#0 TCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTT 689
consensus_10706#1 ACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATT 752
consensus_10706#2 ACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATT 727
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 GATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGA 699
consensus_10706#0 TGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGC 749
consensus_10706#1 CATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAA 812
consensus_10706#2 CATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAA 787
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 CATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAG 759
consensus_10706#0 TGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTT 809
consensus_10706#1 GAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTT 872
consensus_10706#2 GAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTT 847
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 AGACTCCA---------------------------------------------------- 767
consensus_10706#0 GATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGT 869
consensus_10706#1 TTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCA 932
consensus_10706#2 TTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCA 907
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 AGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTA 929
consensus_10706#1 TATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAA 992
consensus_10706#2 TATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAA 967
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 CAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAA 989
consensus_10706#1 GTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAAC 1052
consensus_10706#2 GTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAAC 1027
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 GAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAG 1049
consensus_10706#1 ATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTAT 1112
consensus_10706#2 ATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTAT 1087
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 CCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACA 1109
consensus_10706#1 GTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGA 1172
consensus_10706#2 GTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN------------- 1134
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 ATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTAC 1169
consensus_10706#1 GACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCAT 1232
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 TCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCA 1229
consensus_10706#1 GGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTG 1292
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 ATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTT 1289
consensus_10706#1 TATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTC 1352
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 AAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCC 1349
consensus_10706#1 CTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTT 1412
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 GCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCAT 1409
consensus_10706#1 GTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCA 1472
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 CCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTT 1469
consensus_10706#1 CATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATC 1532
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 TATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACC 1529
consensus_10706#1 AGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGA 1592
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 AGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGA 1589
consensus_10706#1 GGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCT 1652
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 GTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATC 1649
consensus_10706#1 GATGAACACCCTGTTTTGCCGCTAATCCACGTCATGCCAATTTTCCATGAGAAACAGAGA 1712
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 CAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTC 1709
consensus_10706#1 GAACATCATGTAATTTTGAACAGTTGATCACTGAAACTCCACTCTAGGCTGTGCGCTGTG 1772
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 TGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATG 1769
consensus_10706#1 CATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT--------- 1823
consensus_10706#2 ------------------------------------------------------------
consensus_10706#4 ------------------------------------------------------------
consensus_10706#3 ------------------------------------------------------------
consensus_10706#0 TTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCA 1829
consensus_10706#1 -------
consensus_10706#2 -------
consensus_10706#4 -------
consensus_10706#3 -------
consensus_10706#0 CAACATT 1836
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||