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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1208 fasta sequence
[AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATG-GGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAGGCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAGAGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTC-GCCCGCGCGCACGCG-CTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATGATCAG-CCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATCCTAGTGAGTCAAT]
[+] EMBL AK107149 [AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATG GGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAGGCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAGAGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTC GCCCGCGCGCACGCG CTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATGATCAG CCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATCCTAGTGAGTCAAT]
[+] EMBL AU095269 [ agnatnATCAGCTGTAA CAAAGCNTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATA NTCGTGAGGGGGGCCATGAGAGAACCNGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTNCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTNTCAAATGACCCTGAACTTCTTCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGNGGCGTCAAGCGTGTTGTGTTTACNTC ]
[+] EMBL BI805801 [ ACGTCTGCCCGCGCGCACGCGTCTGGTGTACGAGCACCCCGACGCGC TGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGATGTAAGGACAACAGTAAGCC ATGGTGAAACCATAC AATTCTCTGTACAAAGGCTGGAGACTTTAGGCATGCAGTTCACTCCTTTG AAGAGAGTTTATACAG ACGGTAATAAGCTTACAAGACAAGGGTCATCTACCTGCA C ATCTCAC CCGTTCAGCCCTGTGAATCATGATCAGCCCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAGGGAAGATTTGAATAAAaaa ]
consensusID : consensus_10709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTNNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANNCNNNNNNNNNNCTGGTANNNNNANNNNNNG]
[+] EMBL CF196697 [GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGGCCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCGGACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCTNNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANNCNNNNNNNNNNCTGGTANNNNNANNNNNNG]
consensusID : consensus_10709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 390 fasta sequence
[AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC-CCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA-CTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATG-GTGTTTCCACGTGGCATCACCAGTCTCAATGACCTGANTTCTGCACTGCTATGAGGACAAAGATGTCANAATGCTGTGCG]
[+] EMBL C74764 [AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC NCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGAGCTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATG GTGTTTCCACGTGGCATCACCAGTCTCAATGACCTGANTTCTGCACTGCTATGAGGACAAAGATGTCANAATGCTGTGCG]
[+] EMBL AU058401 [ GACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATAC CCGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA CTAAAAGAAGGTTGTCCCTCCACAGA CTGATGTGTTGGACTGCAACAGCCTTCGTGCTGCGTTCAACTTATGCGATGTGT TTTCCACGTGGCATCACCA TCTCAATGACCTGACTTCT ]
[+] EMBL AU058421 [ GACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCCGGCCGACCGAGTCGATCGTCGACGAGAGATGGTCACCGGCGTCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGATACGCCGTGAGGGCAGCCGTGAGAGACCCTGANGGCAGAAAGAATGCTCATTTGCATGCTCTGGAGAGA GTAAAAGAA GTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAG CTTCGTGNTGCGTTC ACTTATGCG ]
consensusID : consensus_10709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNTGGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGGGAGCTTTTCCCCCAGTACCCTATCACCTCCNGGTAACTTAGAAATTTTATGATTAGTGTAATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATCCATTTCCTAAAAAAATATGTAAAATGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031151 [CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNTGGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGGGAGCTTTTCCCCCAGTACCCTATCACCTCCNGGTAACTTAGAAATTTTATGATTAGTGTAATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATCCATTTCCTAAAAAAATATGTAAAATGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10709#1 ------------GCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAA--C 46
consensus_10709#2 --------------AGACAAAAAAGAATACATTCTTACGGCAGAGCAGAGCAGAGCAGCC 46
consensus_10709#0 AAGCAGATATCAGCTGTAAGCAAAGCCTACTAGTACTAGTTACGGCAGAGCAGAGAA--C 58
consensus_10709#3 -------------------------CGCACGCGNTGGTTTACGAGCACCCCGACGCGCNT 35
** *** * *
consensus_10709#1 AGGCGGC-CGAACCGATCGACGACGATGGTCACCGGCCGGAG--CGAGCAGATGGTGTGC 103
consensus_10709#2 GGCCGAC-CGAGTCGATCGTCGACGAGAGATGGTCACCGGCGT-CGAGCAGATGGTGTGC 104
consensus_10709#0 AGGCGGC-CGAACCGATCGACGACGATGGTCACCGGCCGGAG--CGAGCAGATGGTGTGC 115
consensus_10709#3 GGCCGNTACCTNTGCATCGGCAGCGTGNTGCACCGGTCCGNGTTTGTTCGCTTGCTTAGG 95
* ** * **** * ** * * * * * ** * *
consensus_10709#1 GTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGA 163
consensus_10709#2 GTGACCGGCGCCGGTGGCTTCATCGGGTCATGGCTGGTGAAGGAGCTCCTCCACCGCGGA 164
consensus_10709#0 GTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAGGAGCTCCTCCACCGCGGA 175
consensus_10709#3 GAGCTTTTCCCCCAGTACCCTATCACCTCCNGG-TAACTTAGAAATTTTATGATTAGTGT 154
* * * ** * *** ** ** * ** * * * *
consensus_10709#1 TACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTT 223
consensus_10709#2 TACC-CGTGAGGGCAGCCGTGAGAGACCCTGAGGGCAGAAAGAATGCTCATTTGCATGCT 223
consensus_10709#0 TACTTCGTGAGGGGAGCCATGAGAGAACCTGCGGACATCAAGAATGCTCATTTGCATGTT 235
consensus_10709#3 AATCAAACCGATCGAGTGAGAAAAGATTTTATATATGTAAAATGTAATC-----CATTTC 209
* ** * *** * ** * ** ***
consensus_10709#1 CTGGATGGAGCTAGAGAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGC 283
consensus_10709#2 CTGGAGAGA-CTAAAAGAAGGTTGTCCCTCCACAGAGCTGATGTGTTGGACTGCAACAGC 282
consensus_10709#0 CTGGATGGAGCTAGAGAAGGCCTGTCCCTCTATCGAGCTGATGTGCTCGACCGCAACAGC 295
consensus_10709#3 CTAAAAAAATATGTAAAA----TGTNATTTTGTNGAAAAAAAAAAAAAAAAAAAAAAAA- 264
** * * * * * *** * ** * * ** *
consensus_10709#1 CTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAAT 343
consensus_10709#2 CTTCGTGCTGCGTTCAACTTATGCGATGGTGTTT-CCACGTGGCATCACCAGTCTCAA-T 340
consensus_10709#0 CTTCGTGCTGCGTTCGCCTTATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAAT 355
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 GACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCG 403
consensus_10709#2 GACCT--GANTTCTGC--ACTGCTAT-GAGGA---CAAAGATGTCAN-AATGCTG-TGCG 390
consensus_10709#0 GACCCTGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGAATGTCATCAACGCTGCTGCG 415
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 GACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCT 463
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 GACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGCTGTCCATATGAACCCT 475
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 NNNAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTNNNGTGACCTTGAGNNCTGCANN 523
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 AACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTTGAGTTCTGCAAA 535
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 CNNNNNNNNNNCTGGTANNNNNANNNNNNG------------------------------ 553
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 CAAACACAGAACTGGTATTGCTACGCGAAGATGTTGGCCGAGAGGACGGCGATGGAGGAG 595
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 GCGTCGAAGAGAGGTGTGAATCTGTTGGTGGTCGTGCCGGCCGTCACCGTGGGGGAGATG 655
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 CTGCAGCCGACGCTGAACGCCAGCGTCCACAGGGTGGCCACCTACATGTGGGGCACCAAG 715
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 AGTGCGTACCCGAACGCCGTCGCCGCGTACGTCGACGTGCGCGACGTCGCCCGCGCGCAC 775
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 GCGCTGGTGTACGAGCACCCCGACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTG 835
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 CACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCC 895
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 AGATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACAAAGGCTG 955
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 GAGACTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGTTTATACAGAACGGTAATAAGC 1015
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 TTACAAGACAAGGGTCATCTACCTGCAGCAATCTCACGCCGTTCAGCCCTGTGAATCATG 1075
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 ATCAGCCCTGGGAAGATTTGAATAAATTGATTGCGAATCATGATCAGATATAAATTAAAG 1135
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 ------------------------------------------------------------
consensus_10709#2 ------------------------------------------------------------
consensus_10709#0 GGAAGATTTGAATAAACTGAATCTGCGTGTATGCATTGTGAAAAGGAATGGAGTTGAATC 1195
consensus_10709#3 ------------------------------------------------------------
consensus_10709#1 -------------
consensus_10709#2 -------------
consensus_10709#0 CTAGTGAGTCAAT 1208
consensus_10709#3 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||