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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1217 fasta sequence
[GATGGTCGAACACAGCTAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCACCACCTCCAGCAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATGCCGGCGATGATGGCGGACGAGCAGTACATGGACCTGGGCGGTGGCGGGGCGGCGGCGGCGCCGGGGAGGGGCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT-CCTCGACTGATCTGCCGTCTCCCTT-GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCACTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAAACTAGTTTTATATCTAAAAA]
[+] EMBL AY224440 [GATGGTCGAACACAGCTAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCACCACCTCCAGCAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATGCCGGCGATGATGGCGGACGAGCAGTACATGGACCTGGGCGGTGGCGGGGCGGCGGCGGCGCCGGGGAGGGGCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGC ]
[+] EMBL AK109177 [ CAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAGTACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTCCAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATC ]
[+] EMBL AU057927 [ TAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTTGGGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGT ]
[+] EMBL CA752603 [ AGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGTGCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGACGACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGCTGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACGTCT CCTCGACTGATCTGCCGTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTA ATTGGGGTTGCAAGAAGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGG ]
[+] EMBL AU057928 [ CGTCTCCCTCGACTGATCTGCCNTCTCCCTT GGACAGAGAGGGAAAAGAGGGCCGTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCACTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAAACTAGTTTTATATCTAAAAA]
consensusID : consensus_10719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 945 fasta sequence
[CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTATTGGGTCTATAT]
[+] EMBL AK063685 [CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGT ]
[+] EMBL CB652986 [ TCGACCCATTGATCGATATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCG ]
[-] EMBL CB652987 [ AAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGTTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTATTGGGTCTATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10719#0 ----------------------------------------GATGGTCGA----ACACAGC 16
consensus_10719#1 CGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGATATTCGATACGACGTCTC 60
*** **** ** *
consensus_10719#0 TAGCTAGCTGGGCTAGGATCGCCATGGATCGGGGTGACCACCAC-------CACCTCCAG 69
consensus_10719#1 CTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCC-G 119
*** **** * ***** * * *** * * ** ** *
consensus_10719#0 CAGCAGCACCAGTTCTTGATGCCACCGCCTGCGCCGGTGGTGCCGCCGCAGCTGTGCATG 129
consensus_10719#1 CAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGG 179
**** **** ** ** * ** * *** ****** * ***** * * *
consensus_10719#0 CCGGCGATGATGGCGGACGAGCAGTACATGGAC----CTGGGCGGTGGCGGGGCGGCGGC 185
consensus_10719#1 CAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGC 239
* * * ** **** ** ** ** ** * ***** * * * **** ****
consensus_10719#0 GGCGCCGGGGAGGG-----GCGGGGCCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAG 240
consensus_10719#1 GACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAG 299
* ** *** * ** **** * **********************************
consensus_10719#0 ATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGGAGCCCCGCGAGAAG 300
consensus_10719#1 GTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAG 359
* ************ * * *********** * ************** ** ******
consensus_10719#0 GCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGGCAGGTGGCCATCTGGTTCCAGAAC 360
consensus_10719#1 GCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAAC 419
************** ***** ** *********** ************************
consensus_10719#0 AAGCGCGCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTACGCCGCACTCCGCTCCAAG 420
consensus_10719#1 AAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAG 479
******** ****************** ******************* ****** ** **
consensus_10719#0 TACGACGCCCTCCACTCCCGCGTCGAGTCCCTCAAGCAAGAGAAGCTCGCTCTCACCGTC 480
consensus_10719#1 TACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGAC 539
*************** ************* **** *** *********** *** * * *
consensus_10719#0 CAGTTGCACGAGCTAAGAGAGAGGCTGAGGGAACGGGAGGAGAGGAGCGGCAACGGTGGT 540
consensus_10719#1 CAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGAC 599
*** ** * ***** ** * ** ***** ** *** * ** ******** * * *
consensus_10719#0 GCCGCCACGACGGCAGCAAGCAGCAGCAGCTGCAACGGATCAGGCAGCGAGGAGGTCGAC 600
consensus_10719#1 G--GCGGCGGCG-CCGAAGGGGACGACGACGACAAGAGGAATAGCGTGATGAACGCGAGC 656
* ** ** ** * * * * * * * *** * ** * * * *
consensus_10719#0 GACGACGACGACAAGAGGAACGCCGCCGCGGGGTGCCTGGACCTCGAGCCGCCGGAGAGC 660
consensus_10719#1 AGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCT------CGCGGTGCCGG----- 705
* ** * * * * * * * ** * * ***** ** * *****
consensus_10719#0 TGCGTGCTCGGCGGCGCGACGTGCGCCACGCCGGCGGACGTGTCGGTGGAGTCGGATCAG 720
consensus_10719#1 ----TGGTGGACGTCTCGGAGGACGGCTCGGCGGCG--TGCGGCGG-GTCGTCGTACGAG 758
** * * ** * ** * ** * ** ***** * * *** * **** * **
consensus_10719#0 TGCGACGACCAGCTTGACTAC---GATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACG 777
consensus_10719#1 TACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATG 818
* **** * ** ** ****** * * *** * * ** ** * ******* ** *
consensus_10719#0 CCGGAGCTGTGGGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAG 837
consensus_10719#1 CCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATC-----AT 873
***** ********* ****** * ** ** ***** ** ** ** *** *
consensus_10719#0 AGTAGTATATTACCCTAGGTTAATTTGTGTGTACATGTAGCTTAAAGTACGTGGATCACG 897
consensus_10719#1 GCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTA 933
** * ** * * *** ** * * * * ** ** * * * * *
consensus_10719#0 TCTCCTCGACTGATCTGCCGTCTCCCTTGGACAGAGAGGGAAAAGAGGGCCGTGGCAATG 957
consensus_10719#1 TTGGGTCTATAT------------------------------------------------ 945
* ** *
consensus_10719#0 ACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGG 1017
consensus_10719#1 ------------------------------------------------------------
consensus_10719#0 TGGAAACCTTGGAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGA 1077
consensus_10719#1 ------------------------------------------------------------
consensus_10719#0 GAAAACTAGATCGAGCTCATTGGAAGAGTTGCATAGGAATTCAAGCATCTTTTGTGGTCA 1137
consensus_10719#1 ------------------------------------------------------------
consensus_10719#0 CTTCGAATTCGGATTTAGTAGTAATCTATTCGAAAGATGTTCAATTGACGATATTATTAA 1197
consensus_10719#1 ------------------------------------------------------------
consensus_10719#0 ACTAGTTTTATATCTAAAAA 1217
consensus_10719#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||