cluster # 1072

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Oryza sativa
cluster # 1072 cluster # 1072 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1072#0 length = 370 sequences # 1

consensus_1072#1 length = 169 sequences # 1

consensusID : consensus_1072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCCCCCTGAACTTTTTTTCAAACAAATCAAAAAACCCGAGCTTTTTGATTACCCAAAAAAAATTTTTTGGTGCCCCCAATAAACGGAAACTTAACCCTAGCGGGGGTCCTAAATTAAACCCACCCCCCCACTTAAAAAAGTTTTTTTAGCTACCCTTGGTCCCCGGGCCTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGC]

[+] EMBL CF330699             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCCCCCTGAACTTTTTTTCAAACAAATCAAAAAACCCGAGCTTTTTGATTACCCAAAAAAAATTTTTTGGTGCCCCCAATAAACGGAAACTTAACCCTAGCGGGGGTCCTAAATTAAACCCACCCCCCCACTTAAAAAAGTTTTTTTAGCTACCCTTGGTCCCCGGGCCTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGC]




>consensus_1072#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCC
CCCTGAACTTTTTTTCAAACAAATCAAAAAACCCGAGCTTTTTGATTACCCAAAAAAAAT
TTTTTGGTGCCCCCAATAAACGGAAACTTAACCCTAGCGGGGGTCCTAAATTAAACCCAC
CCCCCCACTTAAAAAAGTTTTTTTAGCTACCCTTGGTCCCCGGGCCTTTTTTACCCCTTA
AACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGG
CTTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCA
TGGAAGGGGC

consensusID : consensus_1072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAAGGGTTAAAACTGTTCGGGTAAAGGCCCCCGGGCTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTACCCCTTCAACCCAT]

[+] EMBL CF328152             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAAGGGTTAAAACTGTTCGGGTAAAGGCCCCCGGGCTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTACCCCTTCAACCCAT]




>consensus_1072#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTAAACAAAGGGTTAAAACTGTTCGGGTAAAGGCCCCCGGGCTTTTTTACC
CCTTAAACCCATGGAAGGGGCCCCGGGCTTTTTTACCCCTTCAACCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1072#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCC 60
consensus_1072#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT-----T 55
                      ************************************* ****************      

consensus_1072#0      CCCTGAACTTTTTTTCAAACAAATCAAAAAACCCGAGCTTTTTGATTACCCAAAAAAAAT 120
consensus_1072#1      TTTTTTTTTTTTTTTTAAACAAAGGGTTAAAACTGTTCGGGTAAAGGCCCCCGGG----C 111
                         *    ******* *******     *** * *  *   *  *   ***         

consensus_1072#0      TTTTTGGTGCCCCCAATAAACGGAAACTTAACCCTAGCGGGGGTCCTAAATTAAACCCAC 180
consensus_1072#1      TTTTTTACCCCTTAAACCCATGGAAGG--GGCCCCGGGCTTTTTTACCCCTTCAACCCAT 169
                      *****    **   **   * ****      ***  *      *      ** ****** 

consensus_1072#0      CCCCCCACTTAAAAAAGTTTTTTTAGCTACCCTTGGTCCCCGGGCCTTTTTTACCCCTTA 240
consensus_1072#1      ------------------------------------------------------------
                                                                                  

consensus_1072#0      AACCCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGG 300
consensus_1072#1      ------------------------------------------------------------
                                                                                  

consensus_1072#0      CTTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCTTTTTTTACTCCTTAAACCCA 360
consensus_1072#1      ------------------------------------------------------------
                                                                                  

consensus_1072#0      TGGAAGGGGC 370
consensus_1072#1      ----------