|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3437 fasta sequence
[AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGACAGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCAGCGATAAACTAGCAACAATCCGCAAGGAGAGGAGGAAGAACATTGATATGTTAGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCCTGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCTGGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCCAAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTGAAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGATCAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATACGCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACTGAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGAACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGAACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGATAATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTTGGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCCATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAGAGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTCGCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACAAGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTCAGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGCCATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGAGAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGGCAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGTGCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCAAGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGAAGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGATGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGAGTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAAGAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTCATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTCATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGCTAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGCTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATTTAAAATTTAAAAAAAAAAAAAAAA]
[+] EMBL AK120361 [AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGACAGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCAGCGATAAACTAGCAACAATCCGCAAGGAGAGGAGGAAGAACATTGATATGTTAGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCCTGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCTGGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCCAAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTGAAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGATCAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATACGCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACTGAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGAACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGAACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGATAATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTTGGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCCATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAGAGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTCGCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACAAGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTCAGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGCCATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGAGAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGGCAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGTGCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCAAGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGAAGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGATGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGAGTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAAGAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTCATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTCATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGCTAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAA ]
[+] EMBL CA766463 [ AGCTGTATGGTTCAGTATGGAAAAATAAAGGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGCCTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCAAGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCGGGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGNTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGNTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGNTCTGCAGCTGAAAAANATTGTCCGGTT ]
[-] EMBL CA758981 [ AGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAGTTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACNGGAGCTGTCAAGGAGTGTGCCCTTGGTATACCCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGNTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTTTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCATTCAAGATTAGCCTGCGAGTACGAATTCTTGCATGTGTTACCTCTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTTTGCAGCTGAAAAAGATTGTCCGGTTTGTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATTTAAAATTTAAAAAAAAAAAAAAAA]
[-] EMBL CB639007 [ TGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATG ]
[+] EMBL BI813570 [ cacgcGTCCGGGAGTGTGCCCTTGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTACGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGGCAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCACGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGGCCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATAC ATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAaaaaaaaaa ]
consensusID : consensus_10722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence
[AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGGTGAGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCTAAACTGAATGCATAATTTCGAGTTAATGATTGTAACTGTAAGTGTAACTTTGATTAGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG]
[+] EMBL AK107890 [AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACTTTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCCGCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTCTTCCAGTCTCCGTGGCTATCCCCTCTTCTAGGGTTTCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCACGCCTCAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCGGCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGCGGCGTGTGCGCGCGGCTGGCCGGGTTCGCCTCCACCGCCGCGGGGCGCGCCGCCTGCGGAGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGACGGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGCCGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGGGCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGACACCAGATGGAAGGAGGTGAGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCTAAACTGAATGCATAATTTCGAGTTAATGATTGTAACTGTAAGTGTAACTTTGATTAGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG]
consensusID : consensus_10722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[GGGGGGGAGACTTCCCCCCGCTTCTACCACCTCCACCCCCGTGGCCGCCGCTCTATAACTATTTCCATCCCCCCGGCTGCATTGAATTCAGCACACGCAACACTGTCACTTCTTGACATAACTTGTGCAACGGATACCAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAGGAGAGGACCGAACAACATTGATATGTTACAATCTCTGTTGAACATACATCCACAAAACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCTAGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA]
[+] EMBL AF061761 [GGGGGGGAGACTTCCCCCCGCTTCTACCACCTCCACCCCCGTGGCCGCCGCTCTATAACTATTTCCATCCCCCCGGCTGCATTGAATTCAGCACACGCAACACTGTCACTTCTTGACATAACTTGTGCAACGGATACCAGTTTTGCCTTGATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAGGAGAGGACCGAACAACATTGATATGTTACAATCTCTGTTGAACATACATCCACAAAACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCTAGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA]
consensusID : consensus_10722#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[GAGTAGAAAATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA]
[+] EMBL CF335810 [GAGTAGAAAATACAATGCACAATGGTGGCATTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10722#0 AATACGTCAAGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACT 60
consensus_10722#1 ---------AGTCCACACGAAAGCGGTATTCGATGGGGACAAACCAGGATAAGGCGAACT 51
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCC 120
consensus_10722#1 TTCCGGCGGGAAGCCAAGCCGAGCTCTCCCGCCTCTCCCACGGCCACAGCCATGGCGGCC 111
consensus_10722#2 --------------GGGGGGGAGACTTCCCCCCGCTTCTACCACCTC------------C 34
consensus_10722#3 ---------------GAGTAGAAAATACAATGCACAATGGTGGCATT------------C 33
* ** * * * * *
consensus_10722#0 GCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTC-TTCCAGTCTCCGTGGCTATCCC 179
consensus_10722#1 GCCGCCGCCGCCGCCGCCGCGAAACCCAACCTTCTTC-TTCCAGTCTCCGTGGCTATCCC 170
consensus_10722#2 ACCCCCGTGGCCGCCGCTCTATAACT--ATTTCCATC-CCCCCGGCTGCATTGAATTCAG 91
consensus_10722#3 AAGATTA-GCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCATGG 92
* * * * * * ** * *
consensus_10722#0 CTCTTCTAGGGTT-TCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCAC 238
consensus_10722#1 CTCTTCTAGGGTT-TCTCTTCCCACCGGCCTCGTATGCAGCGCACGGTCCCCGCCGCCAC 229
consensus_10722#2 CACACGCAACACTGTCACTTCTTGACA-TAACTTGTGCAACGGATA-CCAGTTTTGCCTT 149
consensus_10722#3 CAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCCGT 152
* * * * * **
consensus_10722#0 GCCT-CAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCG 297
consensus_10722#1 GCCT-CAGGGCCGCCGCCGCCGCCGCCGCCGCCTCCCAGGCCCTAACGTCGCCTGTCGCG 288
consensus_10722#2 GATTATACTCTTTCTGTGGTCCTTGATCGGGCCACCGATAAACTATCAACAATCCGCAAG 209
consensus_10722#3 ACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGTTGAAAAAAAAAAAAAAAAAAAA 212
* * * * * *
consensus_10722#0 GCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGC 357
consensus_10722#1 GCGGAGACTCCGGAGGCGAAGCAGATGCGGGTAGAGACGGAGGCCGCCCTGGAATGGGGC 348
consensus_10722#2 GAGAGGACC----GAACAACATTGATATGT-TACAATCTCTGTTGAACATACATCCACAA 264
consensus_10722#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA 272
* * * * *
consensus_10722#0 GGCGTGTGCGCGCGGCTGGCCGGGTTCGCCT-CCACCGCCGCGGGGCGCGCCGCCTGCGG 416
consensus_10722#1 GGCGTGTGCGCGCGGCTGGCCGGGTTCGCCT-CCACCGCCGCGGGGCGCGCCGCCTGCGG 407
consensus_10722#2 AACATCTTTCCACGGGTGGTGGGATTTGATAACCCCTGTTGTTCACTAAGCCGCCGTTCT 324
consensus_10722#3 AAAAA------------------------------------------------------- 277
consensus_10722#0 AGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGAC 476
consensus_10722#1 AGAGGGGCGGGTGCCCGTCGGGCGGAGCCGGGAGGAGAGCGAGCGGCTGCTCGAACAGAC 467
consensus_10722#2 AGGGATGTGTGTTCCCGTTGTTAAAACCTTTCACACCA---------------------- 362
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGC 536
consensus_10722#1 GGCGGCGGCCGCGCTGCTGCCTGCTCCGCTGGATTTCGGCGGCGTGGAGGACGTGTCCGC 527
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGG 596
consensus_10722#1 CGCCATCGCCGCGGCGGCTGGGGCCCGGCTGCTTGCGGTGAGGGAGATATGTGGAGTCGG 587
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGAC 656
consensus_10722#1 GCGCAGCATCCGTGCCGCACGCAGGGTGTTCGACCAATTGAAGACGCTCTCAGAGGAGAC 647
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ACCAGATGGAAGGAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTGACTTCTTGAC 716
consensus_10722#1 ACCAGATGGAAGGAGGTG-AGGAAGTTGCTTCCTCGAACTGAATTTCGTAGCACTGAGCT 706
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGAACTTGTGCAACGGATAGAGTTTTGCCTTGATTATA-CTCTTTCTGTGGTCCTTGATC 775
consensus_10722#1 AAACTGAATGCATAATTTCGAGTT----AATGATTGTAACTGTAAGTGTAA-CTTTGATT 761
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGGCCAGCGATAAACTAGCAACAATCCGCAA--GGAGAGGAGGAAGAACATTGATATGTT 833
consensus_10722#1 AGCACTCCTGTCCTGCAGCTACACTCCTCTTCTGGATATAATGCAAGACTGTG------- 814
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGAATCTCTGTTGAGAGATACATCCACAAAGATCTTCCAGGGTGGTGGGATTGATAGCCC 893
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TGTTGTCACTAAGCGCCGTTCTAGGATGTGTGTCGGTGTTAAAGCTTCACACAAGCATCT 953
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGTTCCTGGTGGAATTGTTTTGAGTTCCAGTGGCTCTGGCGCAACATATTTTATGGAGCC 1013
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AAGGGACGCCATCAGGCTGAACAACATGGAAGTAAAGCTCTCAGGCTGATGAAAGAGCTG 1073
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AAGAATTAGCAATATTGGGTCTACTTACTTCAAGCATACCTGACTCCGACACATGAAGAT 1133
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CAGGCATTCGACTGGGGAAAATACTTGGCACTCGACCTGGCTCGTGCCCGAGGTTCATAC 1193
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GCTTTATGGATAAATGCTGTGAGGCCAGCCTTTACTGACAGCGGATAGTGATACTCAACT 1253
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GAATCCAAATAGTGAATGCTCAGTTTTTATCGAGGGCATTCAGCATCCTTTACTTCTTGA 1313
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ACAGTCTCTTAGTATGGTAAAAGAATCAACCAGAGTAGGGAAAGGACAGCTTTCTGATGA 1373
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ACATCTTGTCTCTCCAATGCCTATTCCTCTGGACATGCAGGTGAGAAACGATACTAGGAT 1433
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AATTGTGATCTCTGGACCCAACACTGGAGGCAAAACTGCCACCATGAAGACGTTGGGGTT 1493
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGCCTCTCTGATGTCAAAGGCTGGAATGTTCTTCCCAGCCAAAGGAACCCCTAGGCTTCC 1553
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ATGGTTCGATCAAGTTCTTGCAGATATCGGAGATCACCAGGTAGTCTCTGTCTTTTGAAG 1613
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGAATTTCTCTAATCAATTGGGGATGCTTATTGATGCAAACTCTTTTCTGGATTGAAGTC 1673
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GCTGGAGCATAGCCTCTCTACCTTCAGTGGGCACATATCACGTCTTCGCAAGATTGTACA 1733
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGTTGTGTCAAAAGATTCTCTGGTTCTTATTGATGAGATCGGCAGTGGTACGGATCCGTC 1793
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGACGGTGTAGCCCTTTCAACAAGCATCTTGAAGTATCTTGCTAGTAGGCTTAATCTGGC 1853
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CATTGTGACAACTCATTATGCTGATCTAAGTCGTCTGAAAGCTGTTGACGATCGATTTGA 1913
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GAATGCTGCAATGGAATTTTGTTTGGAAACTCTGCAACCAACATATCAGATCTTATGGGG 1973
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CAGTACTGGTAATTCAAATGCATTGAGTATTGCCAAGTCCATTGGTTTTGATCAGAAAGT 2033
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GCTTGCTCGTGCACAAGAATGGGTTGAGAAACTTTTGCCTGACAAACAGAAGGAACGCCA 2093
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGGTTTACTCTATGGTTCTTTGCTAGATGAAAGAAAACTACTGGAGTCTCAGGCAAATGA 2153
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGCAGCATCTGTTCTTTCAGACGTTGAGAGACTGTACAATGAGATTCGCTCTGAAGCTGA 2213
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TGACCTGGATAGTCGAGTAGCAGCTTTAAGGGCAACAGAGTCTGAAAAGGTGCAACAAGA 2273
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GTTAAAGTTTGTGAAGTCTCAGATGGACCAAATAATCAAGAACTTTGAATCTCAACTCAA 2333
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GAATTCAGAACTTGAACAGTACAATTCACTAATGAGAAAAGCAGAAGCTGCCACTGCTTC 2393
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ATTGGCTGCTACTCACCAGCCAACTGATTTTACCTTCGGTGATGAAGAAAATGAGAGCTC 2453
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 ATATGTTCCTGAAATCGGAGATAAAGTGTACGTTGAGGGGCTGGGAGGAGGAAGTATGGC 2513
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TAGTGTTGTCGAGACACTTGGGGAGGATGGTAGCTGTATGGTTCAGTATGGAAAAATAAA 2573
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGTCCGTGTCAAAGGAAACAAGATAAAGCTGGTCCAAAGAGGCACGAAGGACACGTCAGC 2633
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CTCCTCTCCTGTAAAAGGAAAGGGACGAACACCGAAGAGATCAGCAGCAGAAGCCAACCA 2693
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 AGATGGCAATGTCTCCTTTGGCCCGGTTGTGCAAACATCCAAGAACACAGTGGATCTTCG 2753
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGGAATGAGAGTCGCTGAGGCATCTCATGAGCTTCAGATGGCAATTGACGGGTGCAGAAG 2813
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TTACCAGGTCCTGTTTGTTGTCCATGGCATGGGCACTGGAGCTGTCAAGGAGTGTGCCCT 2873
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TGGTATACTCCGAAACCATCCTCGAGTAGCCAAGTTCGAAGACGAGAGCCCTCTCAACTA 2933
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CGGCTGCACCGTCGCCTACATCGAATAAGCACATTATACGGCTTCATCGAAAACTTATGG 2993
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CAAAGATCGTCTTATGCACACTTGCACGATACTAGCTGGATTATACAGGATTGTATGCCA 3053
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CGTGAGATGAAATTTTGAAGCCGTATGGTTGCCATGTGACAACTGATTTGGACAAGGTGG 3113
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 CCCAGGAACTAATGGAGCTTGGAGCTGATCTGTGCGCTGATACAATGCACAATGGTGGCA 3173
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TTCAAGATTAGCCTGTGAGTACGAATTCTTGCATGTGTTACCTTTGACTTCTTAATCCAT 3233
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GGCAGATATATGCATAGTTTTGTACAGGTGAAAGTCACACGGTACTTGAGACAGATCTCC 3293
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GTACATATAAACTACACATGCGTGCAGTTCGTTCTGCAGCTGAAAAAGATTGTCCGGTTT 3353
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 GTTCAGATCACGCATATCATATTACAACTTCCATCCTAAAATATAATAATTTTTAGTATT 3413
consensus_10722#1 ------------------------------------------------------------
consensus_10722#2 ------------------------------------------------------------
consensus_10722#3 ------------------------------------------------------------
consensus_10722#0 TAAAATTTAAAAAAAAAAAAAAAA 3437
consensus_10722#1 ------------------------
consensus_10722#2 ------------------------
consensus_10722#3 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||