These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 572 fasta sequence [CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA-GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG-GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA-GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG-CTCAT-GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA] [+] EMBL AK120228 [CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGT ] [+] EMBL CF326090 [ TCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTG ] [+] EMBL C74724 [ CTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA CTAGGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG NGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGNATGCCTCAT GGACCGCTTCGNCCTTACCTGACGCCG TCAATGGn ] [+] EMBL OSC2581 [ TACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAG TANGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGNGGCACCGGCGGCCGACGCCGTGGTTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGTACGAGGGACAGCAGCATNCTNCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCATGGGACCGn ] [+] EMBL AU058301 [ TACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA CTANTTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGNGGCACCGGCGGCCGACGCCG TGGTCGGCCAGCGAGCTCAGAGCGAAGGGGNGANCTNCAAGAGTAATGGTTGGTGATGGTGTTGTGCAGGAGATCACGACGANGACGANGGACAGCAGCATCCNCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT ] [+] EMBL AU101357 [ ACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTA GTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCAATGGCGGGCCTGGTTGNAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCGGCGGCCGACGCCG GGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAA GGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA] [+] EMBL CB680140 [ TGTGCACGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATG CTCAT GGACCGCTTCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTAGTGC ] consensusID : consensus_10730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGCCGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTAGTGNTGGNTAAAANAAA] [+] EMBL AU183192 [CCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGCCGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTATATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTAGTGNTGGNTAAAANAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10730#0 CGAAGCAACCAGTCAAGTACTACTACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAA 60 consensus_10730#1 ------------------------------------------------------------ consensus_10730#0 GCTAGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAACAGACTAATCATTAATCA 120 consensus_10730#1 ------------------------------------------------------------ consensus_10730#0 ATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCA 180 consensus_10730#1 ------------------------------------------------------------ consensus_10730#0 CCGGCGGCCGACGCCGGGGTCGGCCAGCGAGCTCAGAGCGAAGGGGAGAGCTGCAAGAGT 240 consensus_10730#1 ------------------------------------------------------------ consensus_10730#0 AAGGTTGGTGATGGTGTTGTGCAGGAGATCACGACGAGGACGAGGGACAGCAGCATCCTC 300 consensus_10730#1 -----------------------------------------------------------C 1 * consensus_10730#0 CTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTGACGC 360 consensus_10730#1 CTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCTTCGCCCCTGCCTNANGC 61 ******************************************************* * ** consensus_10730#0 CGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTA 420 consensus_10730#1 CGCTCNCTGTCCGCTGGGCTTTTGCCGGTAAAATGGATTGATGNAAGCGTGTACCGTGTA 121 ***** *** ************ ******************** **************** consensus_10730#0 TATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTAT 480 consensus_10730#1 TATAGTAGATATACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTAT 181 ************************************************************ consensus_10730#0 CATATGGGTTGTAATCCTTCAAATTTGGAGTCGATTCATTGGTTAATATATGCAGCACTA 540 consensus_10730#1 CATATGGGTTGTTTTCCTTCCAATTTGGAGTCNATTNATTGGTTAATATATGCAGCTCTA 241 ************ ****** *********** *** ******************* *** consensus_10730#0 GTGCTGGTTCTGATAAAAAAAAAAAAAAAAAA 572 consensus_10730#1 GTGNTGGNTAAAANAAA--------------- 258 *** *** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||