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Oryza sativa
cluster # 10739 cluster # 10739       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10739#0 length = 1300 sequences # 3  
consensus_10739#1 length = 980 sequences # 3  
consensus_10739#2 length = 889 sequences # 1  
consensus_10739#3 length = 505 sequences # 1  

consensusID : consensus_10739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1300
fasta sequence
                              [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAGAAATTCATTTTTCTAGATGATGAACATCTTAGTGTACTTGTAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCT-CAGCTGTGTAACAGCAACTCTAACTGAATGGTGGT-GATATCTGCAATATCTTGTTGTCTGCACCACGAGCC-ATAC-AAATTCAGCTGAATTTTCGAGTCAA-CCTTGTACTGAACCAAACAA-A-ACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGAAAAATTCACCTACAGCAACGGGTGGGGCCATGGTGCACATTGAACACATACACAGCGGAGAGATAATGTCCACAACTTTTATAAGGTTTTTCTACTGTAACGCACACTGCTGCGTTCTTCTGTAGAATTTCCACTGCAAAAGATGTGTNNGCGCGCGTCTTCTGTTTCAGTAAACGCGACATCGTCCGTGGCAGCGTGCATGACCGTGGGACAAAGCACGTCGCCGTTGCAGTTTTGTTTTTGTTTGTTTGTTTTTGTTTTTGTTTAAAAA]

[+] EMBL AK068619             [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAGAAATTCATTTTTCTAGATGATGAACATCTTAGTGTACTTGTAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCT CAGCTGTGTAACAGCAACTCTAACTGAATGGTGGT GATATCTGCAATATCTTGTTGTCTGCACCACGAGCC ATAC AAATTCAGCTGAATTTTCGAGTCAA CCTTGTACTGAACCAAACAA A ACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGAA                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS16325A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCT CAGCTGTGTAACANANACTCTAACTGAATGGTGGT GATATCTGCAATATCTTGTTGTCTGCACCACGAGCC ATAC AAATTCAGCTGAATTTTCGAGTCAA CCTTGTACTGAACCAAACAA A ACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGNAAAATTCACCTACAGCAACGGGTGGGGCCATG                                                                                                                                                                                                                                               ]
[+] EMBL AU162147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGTTGAGTCGAGCTNCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTNGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCNATACGAAATTCAGCTGAATTTTCGAGTCAANCCTTGTACTGAACCAAACAANANACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGAAAAATTCACCTACAGCAAC GGTCGCGCCATGGTGCACATTGAACACATACACAGCGGAGAGATAATGTCCACAACTTTTATAAGGTTTTTCTACTGTAACGCACACTGCTGCGTTCTTCTGTAGAATTTCCACTGCAAAAGATGTGTNNGCGCGCGTCTTCTGTTTCAGTAAACGCGACATCGTCCGTGGCAGCGTGCATGACCGTGGGACAAAGCACGTCGCCGTTGCAGTTTTGTTTTTGTTTGTTTGTTTTTGTTTTTGTTTAAAAA]


>consensus_10739#0 CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA CATTCAGTTACTATGCCTTCAAAAGCAGAAATTCATTTTTCTAGATGATGAACATCTTAG TGTACTTGTAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCG CGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCA TATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAG AGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAAC TTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAG TGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGAC CATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTG GTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTC GAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCAAA GATCCCTGAAAAATTCACCTACAGCAACGGGTGGGGCCATGGTGCACATTGAACACATAC ACAGCGGAGAGATAATGTCCACAACTTTTATAAGGTTTTTCTACTGTAACGCACACTGCT GCGTTCTTCTGTAGAATTTCCACTGCAAAAGATGTGTNNGCGCGCGTCTTCTGTTTCAGT AAACGCGACATCGTCCGTGGCAGCGTGCATGACCGTGGGACAAAGCACGTCGCCGTTGCA GTTTTGTTTTTGTTTGTTTGTTTTTGTTTTTGTTTAAAAA



consensusID : consensus_10739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 980
fasta sequence
                              [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGA-TCTCC-AAGC-TTTATG-CGACAAGGTGGGATGG-CCAC-GCAGACCCCTAACCAAAATAGCAGCAT-CCTTAAGAAACAGTTACCTGGTT-GCTACAC-TACATTCAGTTACTATGCCTTCAAAAG-CAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTCGAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGAAAAAAAAA]

[+] EMBL AK059369             [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGA TCTCC AAGC TTTATG CGACAAGGTGGGATGG CCAC GCAGACCCCTAACCAAAATAGCAGCAT CCTTAAGAAACAGTTACCTGGTT GCTACAC TACATTCAGTTACTATGCCTTCAAAAG CAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTCGAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCA                   ]
[+] EMBL AU162775             [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGA TCTCC AAGC TTTATG CGACAAGGTGGGATGG CCAC GCAGACCCCTAACCAAAATAGCAGCAT CCTTAAGAAACAGTTACCTGGTT GCTACAC TACATTCAGTTACTATGCCTTCAAAAG CAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAG AACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAANGTCTTGGTAAAGCGTTAATGGA                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU057725             [                                                                                                                                                                                                                                                                                                     ATTTTCTTCAGCTGGAGATGTTAATGTGTATGANTCTCCAAAGCTTTTATGCCGACAAGGTGGGATGGCCCACGGCAGACCCCTAACCAAAATAGCAGCATCCCTTAAGAAACAGTTACCTGGTTGGCTACACTTACATTCAGTTACTATGCCTTCAAAAGCCAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTCGAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCAAAGATCCCTGAAAAAAAAA]


>consensus_10739#1 CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA CATTCAGTTACTATGCCTTCAAAAGCAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATG GCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCT TCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTC CAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAG AACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTT TAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGG GACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATG GTGGTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATT TTCGAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGC AAAGATCCCTGAAAAAAAAA



consensusID : consensus_10739#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 889
fasta sequence
                              [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCA]

[+] EMBL AK104449             [CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCCCCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACTTGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAACAGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAGGAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCTTCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCACGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTACATTCAGTTACTATGCCTTCAAAAGCAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCA]


>consensus_10739#2 CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA CATTCAGTTACTATGCCTTCAAAAGCAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGC AACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATG TTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAA TCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTG TAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCT GGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGT TCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCA ACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCACCA



consensusID : consensus_10739#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [CATTCAGTTACTATGCCTTCAAAAGCAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCANNANGNNNCATACAAATTCAGCTNANNNNNNNNNTCNNNNAAAANNNNAAAAA]

[+] EMBL CF195907             [CATTCAGTTACTATGCCTTCAAAAGCAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTGGTGATATCTGCAATATCTTGTTGTCTGCANNANGNNNCATACAAATTCAGCTNANNNNNNNNNTCNNNNAAAANNNNAAAAA]


>consensus_10739#3 CATTCAGTTACTATGCCTTCAAAAGCAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATG GCGCGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCT TCATATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTC CAGAGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAG AACTTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTT TAGTGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGG GACCATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATG GTGGTGATATCTGCAATATCTTGTTGTCTGCANNANGNNNCATACAAATTCAGCTNANNN NNNNNNTCNNNNAAAANNNNAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10739#0      CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC 60
consensus_10739#2      CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC 60
consensus_10739#1      CCGTCCTCTTTCAGATGCGTCCCCACGGCGTCGTGCGGTTTGGGGGCCCGGGGTAAAGCC 60
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT 120
consensus_10739#2      CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT 120
consensus_10739#1      CCCGCGCCGCGCCGGCTTCTCCACGACCACGCGCAAGGTAAAAAACGGGCTGCGGCAACT 120
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC 180
consensus_10739#2      TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC 180
consensus_10739#1      TGGTCCTTGAAGGCTGGTCTGTGGGACTCCCTTAGATCCGGATTTTTGAAGAGTAATAAC 180
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG 240
consensus_10739#2      AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG 240
consensus_10739#1      AGTACAGAGACAGTAGAGCCACCATCAGCACCAATTGAAGAGGAAGAACCTTTGCCCGAG 240
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT 300
consensus_10739#2      GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT 300
consensus_10739#1      GAACTAGTACTCCTAGAAAGGACACTTGCTGATGGCAGCACAGAGCAGATCATATTTTCT 300
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA 360
consensus_10739#2      TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA 360
consensus_10739#1      TCAGCTGGAGATGTTAATGTGTATGATCTCCAAGCTTTATGCGACAAGGTGGGATGGCCA 360
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA 420
consensus_10739#2      CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA 420
consensus_10739#1      CGCAGACCCCTAACCAAAATAGCAGCATCCTTAAGAAACAGTTACCTGGTTGCTACACTA 420
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      CATTCAGTTACTATGCCTTCAAAAGCAGAAATTCATTTTTCTAGATGATGAACATCTTAG 480
consensus_10739#2      CATTCAGTTACTATGCCTTCAAAAGCAGAA------------------------------ 450
consensus_10739#1      CATTCAGTTACTATGCCTTCAAAAGCAGA------------------------------- 449
consensus_10739#3      CATTCAGTTACTATGCCTTCAAAAGCAGA------------------------------- 29
                       *****************************                               

consensus_10739#0      TGTACTTGTAGAAGTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCG 540
consensus_10739#2      -------------GTTATTTGACAGAGGGAGAAGAGAGGAAGCAACTAATTGGTATGGCG 497
consensus_10739#1      --------------------------GGGAGAAGAGAGGAAGCAACTAATTGGTATGGCG 483
consensus_10739#3      --------------------------GGGAGAAGAGAGGAAGCAACTAATTGGTATGGCG 63
                                                 **********************************

consensus_10739#0      CGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCA 600
consensus_10739#2      CGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCA 557
consensus_10739#1      CGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCA 543
consensus_10739#3      CGAGCAACTTCAGACCATGCCTTTAATGCTACCATTTGGGATGTTCTCGTTGACCCTTCA 123
                       ************************************************************

consensus_10739#0      TATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAG 660
consensus_10739#2      TATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAG 617
consensus_10739#1      TATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAG 603
consensus_10739#3      TATCAGGGTCAAGGTCTTGGTAAAGCGTTAATGGAGAAAGTAATCCGAACTTTGCTCCAG 183
                       ************************************************************

consensus_10739#0      AGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAAC 720
consensus_10739#2      AGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAAC 677
consensus_10739#1      AGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAAC 663
consensus_10739#3      AGAGACATCAGCAATATTACGCTGTTTGCAGATAACAAAGTTGTAGATTTCTACAAGAAC 243
                       ************************************************************

consensus_10739#0      TTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAG 780
consensus_10739#2      TTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAG 737
consensus_10739#1      TTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAG 723
consensus_10739#3      TTGGGATTCGAAGCTGACCCTCAAGGCATCAAGGGCATGTTCTGGTACCCCAGATTTTAG 303
                       ************************************************************

consensus_10739#0      TGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGAC 840
consensus_10739#2      TGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGAC 797
consensus_10739#1      TGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGAC 783
consensus_10739#3      TGCCAGCGGCCTGACACCTTCCTGTTCATCAGTAATGCCTGGTTCTCACCGCCCAGGGAC 363
                       ************************************************************

consensus_10739#0      CATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTG 900
consensus_10739#2      CATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTG 857
consensus_10739#1      CATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTG 843
consensus_10739#3      CATAGTTTTGTCCAGTTGAGTCGAGCTCAGCTGTGTAACAGCAACTCTAACTGAATGGTG 423
                       ************************************************************

consensus_10739#0      GTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTC 960
consensus_10739#2      GTGATATCTGCAATATCTTGTTGTCTGCACCA---------------------------- 889
consensus_10739#1      GTGATATCTGCAATATCTTGTTGTCTGCACCACGAGCCATACAAATTCAGCTGAATTTTC 903
consensus_10739#3      GTGATATCTGCAATATCTTGTTGTCTGCANNANGNNNCATACAAATTCAGCTNANNNNNN 483
                       *****************************  *                            

consensus_10739#0      GAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCAAA 1020
consensus_10739#2      ------------------------------------------------------------
consensus_10739#1      GAGTCAACCTTGTACTGAACCAAACAAAACACTTCTTATTGTCACTAGCAAAACTGCAAA 963
consensus_10739#3      NNNTCNNNNAAAANNNNAAAAA-------------------------------------- 505
                                                                                   

consensus_10739#0      GATCCCTGAAAAATTCACCTACAGCAACGGGTGGGGCCATGGTGCACATTGAACACATAC 1080
consensus_10739#2      ------------------------------------------------------------
consensus_10739#1      GATCCCTGAAAAAAAAA------------------------------------------- 980
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      ACAGCGGAGAGATAATGTCCACAACTTTTATAAGGTTTTTCTACTGTAACGCACACTGCT 1140
consensus_10739#2      ------------------------------------------------------------
consensus_10739#1      ------------------------------------------------------------
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      GCGTTCTTCTGTAGAATTTCCACTGCAAAAGATGTGTNNGCGCGCGTCTTCTGTTTCAGT 1200
consensus_10739#2      ------------------------------------------------------------
consensus_10739#1      ------------------------------------------------------------
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      AAACGCGACATCGTCCGTGGCAGCGTGCATGACCGTGGGACAAAGCACGTCGCCGTTGCA 1260
consensus_10739#2      ------------------------------------------------------------
consensus_10739#1      ------------------------------------------------------------
consensus_10739#3      ------------------------------------------------------------
                                                                                   

consensus_10739#0      GTTTTGTTTTTGTTTGTTTGTTTTTGTTTTTGTTTAAAAA 1300
consensus_10739#2      ----------------------------------------
consensus_10739#1      ----------------------------------------
consensus_10739#3      ----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)