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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2441 fasta sequence
[GGCCAGTCCAGTCCAGTCCAGTCCAGGACGGTCCAGTCCGGTCCCGTAGAGCGCCGGCGCGTGTAGCTTCCTCCTCCGCTCCAGGCTCCAGCGAGGGAGGGAGGGAGACCACCGTCTCCGCCGGCTTTGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGCGGCGAGATGCGGAAGCGGGATCTGGGCATCCTCCTCCTCGCCGCCTTCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAGTGAGAAGCAGGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCT-T-GGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGTCACAAAGGACGCTTTATGTTCCGACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACGAAAAAGAAGGGATAGAGGCTGTTCATCTAGCTTCTGGACGTACAATCTGCAAGCTTCATTTAACAGAAGGAGGCCTTCATGCAGATATTAATGGAGATGGGGTTCTAGACCATGTTCAGGTTGTTGGTGCAAATGGCATCGAGCAAACAGTTGTTAGTGGTTCAATGGAAGTGCTGAAACCTTGTTGGGCAGTAGCTACATCTGGTGTGCCAGTGCGGGAGCAACTTTTTAATGTTTCTATCTGCCATTACAACAATTTCAATTTGTTTCATCATGGTGACTTTTCAAGAAGTTTTGGGAGGACATTTGATACAACTGGCTTAGAGGTGGCGACTCCTATTCTGCTCCAGAGAGATGATGGTCATAAACACAGGAGAGGAAGCCACGGGGATATCATCTTTCTTACGAGTCGTGGGGAGGTGACCTCGTACTCTCCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTCAACAGGTGCAACATGGTCCAACCTTCCGTCTCCATCAGGGATGATGGAAAACATTGTAGTTCCAACTTTGAAGGCTTTCTCTCTGCGAGCCTATGACCCAAAACAGGTAATCATCGCGGGTGGTGATCTGGAGGCTGTGGTGATTTCTCCTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATGCGCTGGTACTTGAAGATTTCAATGGTGATGGTTTAACTGATATTATTCTGGTAACATCGGGGGGAGTCTATGGGTTTGTGCAGACAAGACATCCTGGGGCTCTTTTCTTCAGCACGCTTGTGGGTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAACTCCTCGAACAGCGGTAAACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAGTCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCATATAATCAACTGCCAACTGGGTTATGTAAACTTGTGCGGCGAATGCATTTTAGGGGTAACATGTTGTATGATTTGGGATGTAAAAAAAATAAAAGA]
[+] EMBL AK068943 [GGCCAGTCCAGTCCAGTCCAGTCCAGGACGGTCCAGTCCGGTCCCGTAGAGCGCCGGCGCGTGTAGCTTCCTCCTCCGCTCCAGGCTCCAGCGAGGGAGGGAGGGAGACCACCGTCTCCGCCGGCTTTGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGCGGCGAGATGCGGAAGCGGGATCTGGGCATCCTCCTCCTCGCCGCCTTCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAGTGAGAAGCAGGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCT T GGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGTCACAAAGGACGCTTTATGTTCCGACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACGAAAAAGAAGGGATAGAGGCTGTTCATCTAGCTTCTGGACGTACAATCTGCAAGCTTCATTTAACAGAAGGAGGCCTTCATGCAGATATTAATGGAGATGGGGTTCTAGACCATGTTCAGGTTGTTGGTGCAAATGGCATCGAGCAAACAGTTGTTAGTGGTTCAATGGAAGTGCTGAAACCTTGTTGGGCAGTAGCTACATCTGGTGTGCCAGTGCGGGAGCAACTTTTTAATGTTTCTATCTGCCATTACAACAATTTCAATTTGTTTCATCATGGTGACTTTTCAAGAAGTTTTGGGAGGACATTTGATACAACTGGCTTAGAGGTGGCGACTCCTATTCTGCTCCAGAGAGATGATGGTCATAAACACAGGAGAGGAAGCCACGGGGATATCATCTTTCTTACGAGTCGTGGGGAGGTGACCTCGTACTCTCCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTCAACAGGTGCAACATGGTCCAACCTTCCGTCTCCATCAGGGATGATGGAAAACATTGTAGTTCCAACTTTGAAGGCTTTCTCTCTGCGAGCCTATGACCCAAAACAGGTAATCATCGCGGGTGGTGATCTGGAGGCTGTGGTGATTTCTCCTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATGCGCTGGTACTTGAAGATTTCAATGGTGATGGTTTAACTGATATTATTCTGGTAACATCGGGGGGAGTCTATGGGTTTGTGCAGACAAGACATCCTGGGGCTCTTTTCTTCAGCACGCTTGTGGGTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAACTCCTCGAACAGCGGTAAACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAGTCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCATATAATCAACTGCCAACTGGGTTATGTAAACTTGTGCGGCGAATGCA ]
[+] EMBL CB645545 [ GGCCTTGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGCGGCGAGATGCGGAAGCGGGATCTGGGCATCCTCCTCCTCGCCGCCTTCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAGTGAGAAGCAGG ]
[+] EMBL CB668333 [ GAGACCTAGAGAGAGAGAGAGCGGCGAGATGCGGAAGCGGGATCTGGGCATCCTCCTCCTCGCCGCCTTCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGGTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGGTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGGCGGAGGAAGGATGGAAATGCAACATCATTCAGCACAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCCGTGAGAAGCA ]
[+] EMBL CB671541 [ GGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCT T GGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGTCACAAAGGACGCTTTATGTTCCGACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACGAAAAAGAAGGGATAGAGGCTGTTCATCTAGCTTCTGGACGTACAATCTGCAAGCTTCATTTAACAGAAGGAGGCCTTCATGCAGATATTAATGGAGATGGGGTTCTAGACCATGTTCAGGTTGTTGGTGCAAATGGCATCGAGCAAACAGTTGTTAGTGGTTCAATGGAAGTGCTGAAACCTTGTTGGGCAGTAGCTACATCTGGTGTGCCAGTGCGGGAGCAACTTTTTAATGTTTCTATCTGCCATTACAACAATTTCAATTTGTTTCATCATGGTGACTTTTTCAGA ]
[+] EMBL CB672484 [ AGAATCAGTTCTATAGGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAAGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGTCACAAAGGACGCTTTATGTTCCGACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACCAAAAAGAACGGATAGAGGCTGCTCATCTAGCTTCTGGACGTACAATCTGCAAGCTTCATTTAACAGAAGGAGGCCTTCATGCAGATATTAATGGAGATGGGGTTCTAGACCATGTTCAAGTTGTTGGTGCAAATGGCATCGAGCAAACAGCTGTTAGTGGTTCACTGGAAGTGCTGAAACCTTGTTGGGCAGTAGCTACATCTGGTGTGCCAGTGCGGGAGCAACTTTTTAATGTTTCTATCTGCCATTACAACAATCTCAATTTG ]
[-] EMBL CB668334 [ TTGTTTCATCATGGTGACTTTTCAAGAAGTTTTGGGAGGACATTTGATACAACTGGCTTAGAGGTGGCGACTCCTATTCTGCTCCAGAGAGATGATGGTCATAAACACAGGAGAGGAAGCCACGGGGATATCATCTTTCTTACGAGTCGTGGGGAGGTGACCTCGTACTCTCCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTCAACAGGTGCAACATGGTCCAACCTTCCGTCTCCATCAGGGATGATGGAAAACATTGTAGTTCCAACTTTGAAGGCTTTCTCTCTGCGAGCCTATGACCCAAAACAGGTAATCATCGCGGGTGGTGATCTGGAGGCTGTGGTGATTTCTCCTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATGCGCTGGTACTTGAAGATTTCAATGGTGATGGTTTAACTGATATTATTCTGGTAACATCGGGGGGAGTCTATGGGTTTGTGCAGACAAGACATCCTGGGGCTCTTTTTTTCAGCACGCTTGTGGGTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAACTCCTCGAACAGCGGTAAACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAGTCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCATATAATCAACTGCCAACTGGGTTATGTAAACTTGTGCGGCGAATGCATTTTAGGGGTAACATGTTGTATGATTTGGGATGTAAAAAAAATAAAAGA]
consensusID : consensus_10750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1787 fasta sequence
[CAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAGTGAGAAGCAGGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCTTGGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGGTATAATGCATGCAGACACAAACACATAGTTCTTACGCACTAGCATGTTGACTGTGTTGTTCTTTTTGTGTTTGGTGTTTTGGGGAGGGGGGAGGGGGGAGGGGGAGTTGCATGAACGCAGTAGTGGTAACGTGCATGGGCCAACGTAGGCACCAGGAGCAGGAGCACTCGTGATTGCACGGCGCACAGAGCTACTCAAGATGGAGAGGATGGTGGCGTGGGGAGGGGAGAGGATAGGATTTGAAATGAGGCAGATCAGTGGAGGCAGTGGTGCTGGCAGTTACTGGGCCAAGATGACATTGTAGGTGGTCGGGTAGAAGGAAAAAGAGAAGATGGCAGGGGCAGTCGAGGGTTCTTAAGAGTGGATTTGGTGTTCACCCAGTAGGAAATGGGTGAAGATTTGCCCAGTAGGGCCTCCCTTACTCTCATTTCAAAATGTATCCTCTCAATTTATCTGCAAGTGTGTTCGTCTTGAAGATACTGTATACTTTCCGATCCATTTACTGTACTCTCAAAATTAGTGTTAAATTGTATCCCTGGAACTATATTCTAAATAAGTAAGAACAGTCAA]
[+] EMBL AK070106 [CAGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAGTGAGAAGCAGGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACCATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAATAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCTTGGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGGTATAATGCATGCAGACACAAACACATAGTTCTTACGCACTAGCATGTTGACTGTGTTGTTCTTTTTGTGTTTGGTGTTTTGGGGAGGGGGGAGGGGGGAGGGGGAGTTGCATGAACGCAGTAGTGGTAACGTGCATGGGCCAACGTAGGCACCAGGAGCAGGAGCACTCGTGATTGCACGGCGCACAGAGCTACTCAAGATGGAGAGGATGGTGGCGTGGGGAGGGGAGAGGATAGGATTTGAAATGAGGCAGATCAGTGGAGGCAGTGGTGCTGGCAGTTACTGGGCCAAGATGACATTGTAGGTGGTCGGGTAGAAGGAAAAAGAGAAGATGGCAGGGGCAGTCGAGGGTTCTTAAGAGTGGATTTGGTGTTCACCCAGTAGGAAATGGGTGAAGATTTGCCCAGTAGGGCCTCCCTTACTCTCATTTCAAAATGTATCCTCTCAATTTATCTGCAAGTGTGTTCGTCTTGAAGATACTGTATACTTTCCGATCCATTTACTGTACTCTCAAAATTAGTGTTAAATTGTATCCCTGGAACTATATTCTAAATAAGTAAGAACAGTCAA]
consensusID : consensus_10750#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[TCGTACTCTCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTCAACAGGTGCAACATGGTCCAACCTTCCGTCTCCATCAGGGATGATGGAAAACATTGTAGTTCCAACTTTGAAGGCTTTCGCTCTGCGAGCCTATGACCCAAAACAGGTAATCATCGCGGGTGGTGATCTGGAGGCTGTGGTGATTTCTCCTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATGCGCTGGTACTTGAAGATTTCAATGGTGATGGTTTAACTGATATTATTCTGGTAACATCGGGGGGAGTCTATGGGTTTGTGCAGACAAGACATCCTGGGGCTCTTTTCTTCAGCACGCTTGTGGCTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAACTCCTCGAACAGCGGTAAACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAGTCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCATATAATCAACTGCCAACTGGGTTATGTAAACTNGTGCGGNCGAATGCATTTTTTGGCGTAACATGGTTGTATGATTTGGGGATGTATTTCCTGGCTTAGCTCATATTTAAAGAGGAATAGGCACTTGCCACCATGACATATCGTGCCTCTGGATCCCCTAGGACAATAACCAGTGGATTTTTCGGTGNNGNTTTTNGGATACCTNTGTTTTGGTGGGTTATATTATTAGNG]
[+] EMBL CA766064 [TCGTACTCTCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTCAACAGGTGCAACATGGTCCAACCTTCCGTCTCCATCAGGGATGATGGAAAACATTGTAGTTCCAACTTTGAAGGCTTTCGCTCTGCGAGCCTATGACCCAAAACAGGTAATCATCGCGGGTGGTGATCTGGAGGCTGTGGTGATTTCTCCTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATGCGCTGGTACTTGAAGATTTCAATGGTGATGGTTTAACTGATATTATTCTGGTAACATCGGGGGGAGTCTATGGGTTTGTGCAGACAAGACATCCTGGGGCTCTTTTCTTCAGCACGCTTGTGGCTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAACTCCTCGAACAGCGGTAAACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAGTCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCATATAATCAACTGCCAACTGGGTTATGTAAACTNGTGCGGNCGAATGCATTTTTTGGCGTAACATGGTTGTATGATTTGGGGATGTATTTCCTGGCTTAGCTCATATTTAAAGAGGAATAGGCACTTGCCACCATGACATATCGTGCCTCTGGATCCCCTAGGACAATAACCAGTGGATTTTTCGGTGNNGNTTTTNGGATACCTNTGTTTTGGTGGGTTATATTATTAGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10750#0 GGCCAGTCCAGTCCAGTCCAGTCCAGGACGGTCCAGTCCGGTCCCGTAGAGCGCCGGCGC 60
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 GTGTAGCTTCCTCCTCCGCTCCAGGCTCCAGCGAGGGAGGGAGGGAGACCACCGTCTCCG 120
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCGGCTTTGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGCGGCGAGATGCGGAAGCGGGA 180
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TCTGGGCATCCTCCTCCTCGCCGCCTTCGCCGTCTTCTTCTCGCTCCAGCACGACGGCGA 240
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCAAGCACGA 300
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAACCCGAGGT 360
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGCCCTCCCC 420
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCCCCTCCAA 480
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCGACCGCCA 540
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCGGATGGTC 600
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGGACGATTT 660
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCAACTACACTCTCAAGCA 720
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCATTCAGCAGA 780
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 GCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGAAGCGCCAG 840
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TGAGAAGCAGGCTTCTGAGACAGGCAACACAGACCTGCGTCATTTTGCCCTTTATGCTTT 900
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAAGAATGAGAATATCCCATCGCAACC 960
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 ATCCGATGCTTCAGTGCTGATACCACAACACAATTACAAGCTTGATGCCCATGCCCTTAA 1020
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TAGTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGAATCAGTTCTTGGGGTCAT 1080
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 GCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACTTGCCCATTTTAGGAGGCA 1140
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGTAAATAACGTGCACAAGCC 1200
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTTAGCAAATGTGATTGGGAA 1260
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 AGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGTCACAAAGGACGCTTTATGTTCC 1320
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 GACAATCACCAACTATACTCAAGTTTGGTGGGTTCCTAATGTTGTTGTTGCCCACGAAAA 1380
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 AGAAGGGATAGAGGCTGTTCATCTAGCTTCTGGACGTACAATCTGCAAGCTTCATTTAAC 1440
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 AGAAGGAGGCCTTCATGCAGATATTAATGGAGATGGGGTTCTAGACCATGTTCAGGTTGT 1500
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TGGTGCAAATGGCATCGAGCAAACAGTTGTTAGTGGTTCAATGGAAGTGCTGAAACCTTG 1560
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 TTGGGCAGTAGCTACATCTGGTGTGCCAGTGCGGGAGCAACTTTTTAATGTTTCTATCTG 1620
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ------------------------------------------------------------
consensus_10750#0 CCATTACAACAATTTCAATTTGTTTCATCATGGTGACTTTTCAAGAAGTTTTGGGAGGAC 1680
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ----------------------------CAGCAGCGATGGCAATGGAGAGGCTTATCTCT 32
consensus_10750#0 ATTTGATACAACTGGCTTAGAGGTGGCGACTCCTATTCTGCTCCAGAGAGATGATGGTCA 1740
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 TCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCCTTCTCCCGCCCGCCGCCCTCCCTC 92
consensus_10750#0 TAAACACAGGAGAGGAAGCCACGGGGATATCATCTTTCTTACGAGTCGTGGGGAGGTGAC 1800
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 GCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCGCCGTCTTCTTCTCGCTCCAGCACG 152
consensus_10750#0 CTCGTACTCTCCAGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTC--AACA 1858
consensus_10750#2 -TCGTACTCTC-AGGTCTACTTGGTCATGATGCAATATGGAGATGGCAACTGTC--AACA 56
consensus_10750#1 ACGGCGACCTCTCCTTCCGCGAGGCCTGGTACCACCTCTCCGATGCCGACTACCCCATCA 212
* *** ** * ** * * ** **** * *** * * **
consensus_10750#0 GGTGCAACATGGTCCAACCTTCC---------GTCTCCA---TCAGGGATGATGGAAAAC 1906
consensus_10750#2 GGTGCAACATGGTCCAACCTTCC---------GTCTCCA---TCAGGGATGATGGAAAAC 104
consensus_10750#1 AGCACGACGCCGACCGCCTCCCCTCTCCCCTAGTCGCCGACCTCAACGGCGACGGCAAAC 272
* * ** * ** * ** *** ** *** * ** ** ****
consensus_10750#0 -----ATTGTAGTTCCAACTT------TGAAGGCTTTCTCTCTGCGAGCCTAT----GAC 1951
consensus_10750#2 -----ATTGTAGTTCCAACTT------TGAAGGCTTTCGCTCTGCGAGCCTAT----GAC 149
consensus_10750#1 CCGAGGTCCTCATCCCCACCCACGACGCCAAGATCCAGGTCCTCCAGCCCCACCCCAGGC 332
* * * ** ** *** ** * ** * * *
consensus_10750#0 CCAAAACAGGTAAT-----CATCGCGGGTGGTGATCTGGAGGCTGTGGTGA---TTTCTC 2003
consensus_10750#2 CCAAAACAGGTAAT-----CATCGCGGGTGGTGATCTGGAGGCTGTGGTGA---TTTCTC 201
consensus_10750#1 CCTCCCCCGACGATGCCTCCTTCCACGACGCCCGCCTCATGGCTGATGTCTCCCTCCTCC 392
** * * ** * ** * * ** ***** ** * *
consensus_10750#0 CTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATG-CGCTGGTA 2062
consensus_10750#2 CTTCTGGTGGTTTATTGGCATCCATTGAACTCCCTGCACCTCCAACCCATG-CGCTGGTA 260
consensus_10750#1 CCTCCAACGTTCGCCTCTCCTCCGGGAGGCGCCCCGTCGCCATGGCCGTTGGCACCGTCG 452
* ** * * * * *** * *** * * ** ** * * *
consensus_10750#0 CTTG--AAGATTTCAATGGTGATGGTTTAACTGA------TATTATTCTGGTAACATCGG 2114
consensus_10750#2 CTTG--AAGATTTCAATGGTGATGGTTTAACTGA------TATTATTCTGGTAACATCGG 312
consensus_10750#1 ACCGCCACTACGCCCACGCCCCCTCCCCCTCCAAGCAGCTCCTCGTCGTCGTCACCTCCG 512
* * * * * * * * * * * ** ** ** *
consensus_10750#0 GGGGAGTC--TATGGGTTT-GTGCAGA----CAAGACATCCTGGGGCTCTTTTCTTCAGC 2167
consensus_10750#2 GGGGAGTC--TATGGGTTT-GTGCAGA----CAAGACATCCTGGGGCTCTTTTCTTCAGC 365
consensus_10750#1 GATGGTCCGTCATGTGCTTCGACCACAACCTCAAAAAGCTCTGGGAGGCTAATCTCCAGG 572
* * * *** * ** * ** * *** * ***** ** *** ***
consensus_10750#0 ACGCTTGTGGGTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAAC 2227
consensus_10750#2 ACGCTTGTGGCTTGCTTGATAGTTGTTATCGGAGTGATATTTGTTTCACTGCACCTCAAC 425
consensus_10750#1 ACGATTTCCCCCACGCCGCCCACCATCGCGAGGTTGCCATTTCCATTACCA-ACTACACT 631
*** ** * * * ** **** * ** ** **
consensus_10750#0 TCCTCGAACAGCGGTA-AACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAG 2286
consensus_10750#2 TCCTCGAACAGCGGTA-AACCTAGGGCTTCAACCGACTATAGGTGACGACATTATGTCAG 484
consensus_10750#1 CTCAAGCATGGGGATGCAGGTTTGGTCATCGTCGGAGGAAGGATGGAAATGCAACATCAT 691
* * * * * * * * ** * ** * ** * * ** * * ***
consensus_10750#0 TCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCAT 2346
consensus_10750#2 TCGACAGAATTCCTTGTCAATATTGAGGTGTTGTTATAGCATTTGATTTAGATTTTTCAT 544
consensus_10750#1 TCAGCAGAGCTTTTCGATGAATTTATGGTGTCAGAACACAACAGGGAAGAGCACCGTAGA 751
** **** * * * * ** ***** * * * * ** *
consensus_10750#0 ATAATCAACTGCCAACTGGGTTATGTAAACTTGTGCGGC-GAA-TGCATTTTAGGG-GTA 2403
consensus_10750#2 ATAATCAACTGCCAACTGGGTTATGTAAACTNGTGCGGNCGAA-TGCATTTTTTGGCGTA 603
consensus_10750#1 AGCGCCAGTGAGAAGCAGGCTTCTG-AGACAGGCAACACAGACCTGCGTCATTTTGCCCT 810
* ** * * ** ** ** * ** * ** *** * * *
consensus_10750#0 ACATG-TTGTATGATTTGGG-ATGTAAAAAAAATAAAAGA-------------------- 2441
consensus_10750#2 ACATGGTTGTATGATTTGGGGATGTATTTCCTGGCTTAGCTCATATTTAAAGAGGAATAG 663
consensus_10750#1 TTATGCTTTTGCTGGCCGCACTGGTGAATTAAGATGGAGCCGAAA---GAATGAGAATAT 867
*** ** * * ** **
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 GCACTTGCCACCATGACATATCGTGCCTCTGGATCCCCTAGGACAATAACCAGTGGATTT 723
consensus_10750#1 CCCATCGCAACCATCCGATGCTTCAGTGCTG-ATACCACAACACAATTACAAGC----TT 922
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 TTCGGTGNNGNTTTTNGGATACCTNTGTTTTGGTGGGTTATATTATTAGNG--------- 774
consensus_10750#1 GATGCCCATGCCCTTAATA-GTCGTCATCCTGGTCAGTTCGAATGTCGGGAATTTAGAGA 981
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ATCAGTTCTTGGGGTCATGCCTCATCATTGGGATAGGAGAGAGGATACTTTTCTGCAACT 1041
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 TGCCCATTTTAGGAGGCATAAAAGGAAAGCACTGAAGAAAACACCTGGAAAAGCTGTTGT 1101
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 AAATAACGTGCACAAGCCCAGTGAACATAATCCACCTGGAAAGGATGTTTCCAATAGGTT 1161
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 AGCAAATGTGATTGGGAAAGCTGCAGATATGGCTAATTCAAATAAAATCAAGAAGGTATA 1221
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ATGCATGCAGACACAAACACATAGTTCTTACGCACTAGCATGTTGACTGTGTTGTTCTTT 1281
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 TTGTGTTTGGTGTTTTGGGGAGGGGGGAGGGGGGAGGGGGAGTTGCATGAACGCAGTAGT 1341
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 GGTAACGTGCATGGGCCAACGTAGGCACCAGGAGCAGGAGCACTCGTGATTGCACGGCGC 1401
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ACAGAGCTACTCAAGATGGAGAGGATGGTGGCGTGGGGAGGGGAGAGGATAGGATTTGAA 1461
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ATGAGGCAGATCAGTGGAGGCAGTGGTGCTGGCAGTTACTGGGCCAAGATGACATTGTAG 1521
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 GTGGTCGGGTAGAAGGAAAAAGAGAAGATGGCAGGGGCAGTCGAGGGTTCTTAAGAGTGG 1581
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 ATTTGGTGTTCACCCAGTAGGAAATGGGTGAAGATTTGCCCAGTAGGGCCTCCCTTACTC 1641
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 TCATTTCAAAATGTATCCTCTCAATTTATCTGCAAGTGTGTTCGTCTTGAAGATACTGTA 1701
consensus_10750#0 ------------------------------------------------------------
consensus_10750#2 ------------------------------------------------------------
consensus_10750#1 TACTTTCCGATCCATTTACTGTACTCTCAAAATTAGTGTTAAATTGTATCCCTGGAACTA 1761
consensus_10750#0 --------------------------
consensus_10750#2 --------------------------
consensus_10750#1 TATTCTAAATAAGTAAGAACAGTCAA 1787
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||