These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1074 fasta sequence [CCCGTGTCCTCCTCCCACCTCGCTCCCCCGTAAAACCCGAAATTACAATCAGGTCCTCGGCGGACGCCACCCCCAAATCTGAAACCCTCGCCGCCGCCGCCGCCGCGCGATCCCCCCCGGAATTCCATCGGATCGGCCCCCGCCTCTCCGGCGAGATGGGCATCTCGAGCATGCCGGCGCCCAAGGACAGCGTGGTGGCGTACCTGCTGTACAACACGGCGGTGTCGATCGCCATCCTGGCGGACATGGTGCGGGCGGCGCTGGTGTTCCTCGGCCTCCCCGTGCCGCCCTCGGCGTGGGAGGACGGCGACGACCAGCTGGCGGCGATCGCGGCGGCCGCCGCGGCCGCGGCCGCGGCGGCGGGGGGCCCGAGCCTGGCGGACAGGTTCCGGAGCAGGTTCAGGCCGGCGAGGTTCGGGCGGCGGCGAGGCGGGGGCGCGGGCGCGGCCGACTGCCGCGTCTGCCTCGCGCGGTTCGAGCCGGAGTCGGTGGTGAACCGCCTCCCCTGCGGCCACCTCTTCCACCGCGCCTGCCTCGAGAAGTGGCTCGACTACGACCACGCCACCTGCCCGCTCTGCCGCCACCGCCTCCTCCCCGCCACCACCGAGTCCCCCTCGCCGTCGCCGGCGACGGCGACCCCCCATTTCGCCCGGATTTAGAGAGATCTCCCCCCTTCAATCCGCCACTGGGCCGTGTGCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTTGTGTTGCTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCA-CTTGTGTACAGGGCTTTTGGAAAGCGAAGAGATGAGAAGGAGAGAAAAAAAAATCATTGCCCAAAAAAAAAAAAAAAAAAAAATAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAGAAAAAAAAAAAAACCCTCGA] [+] EMBL AK065316 [CCCGTGTCCTCCTCCCACCTCGCTCCCCCGTAAAACCCGAAATTACAATCAGGTCCTCGGCGGACGCCACCCCCAAATCTGAAACCCTCGCCGCCGCCGCCGCCGCGCGATCCCCCCCGGAATTCCATCGGATCGGCCCCCGCCTCTCCGGCGAGATGGGCATCTCGAGCATGCCGGCGCCCAAGGACAGCGTGGTGGCGTACCTGCTGTACAACACGGCGGTGTCGATCGCCATCCTGGCGGACATGGTGCGGGCGGCGCTGGTGTTCCTCGGCCTCCCCGTGCCGCCCTCGGCGTGGGAGGACGGCGACGACCAGCTGGCGGCGATCGCGGCGGCCGCCGCGGCCGCGGCCGCGGCGGCGGGGGGCCCGAGCCTGGCGGACAGGTTCCGGAGCAGGTTCAGGCCGGCGAGGTTCGGGCGGCGGCGAGGCGGGGGCGCGGGCGCGGCCGACTGCCGCGTCTGCCTCGCGCGGTTCGAGCCGGAGTCGGTGGTGAACCGCCTCCCCTGCGGCCACCTCTTCCACCGCGCCTGCCTCGAGAAGTGGCTCGACTACGACCACGCCACCTGCCCGCTCTGCCGCCACCGCCTCCTCCCCGCCACCACCGAGTCCCCCTCGCCGTCGCCGGCGACGGCGACCCCCCATTTCGCCCGGATTTAGAGAGATCTCCCCCCTTCAATCCGCCACTGGGCCGTGTGCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTTGTGTTGCTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCA CTTGTGTACAGGGCTTTTGGAAAGCGAAGAGATGAGAAGGAGAGAAAAAAAA ] [+] EMBL CB678948 [ TCCCCCGTAAAACCCGAAATTACAATCAGGTCCTCGGCGGACGCCACCCCCAAATCTGAAACCCTCGCCGCCGCCGCCGCCGCGCGATCCCCCCCGGAATTCCATCGGATCGGCCCCCGCCTCTCCGGCGAGATGGGCATCTCGAGCATGCCGGCGCCCAAGGACAGCGTGGTGGCGTACCTGCTGTACAACACGGCGGTGTCGATCGCCATCCTGGCGGACATGGTGCGGGCGGCGCTGGTGTTCCTCGGCCTCCCCGTGCCGCCCTCGGCGTGGGAGGACGGCGACGACCAGCTGGCGGCGATCGCGGCGGCCGCCGCGGCCGCGGCCGCGGCGGCGGGGGGCCCGAGCCTGGCGGACAGGTTCCGGAGCAGGTTCAGGCCGGCGAGGTTCGGGCGGCGGCGAGGCGGGGGCGCGGGCGCGGCCTACTGCCGCGTCTGCCTCACGCGGTTCGAGCCGGAATCGGTGGTGAACCGCATCCCCTGCGGCCACCTCTTCCACCGCAACTGCCTCAAGAAGTGGCTCGACTACGACCACGCCACCTGCCCGCTCTGCCGCCACCG ] [+] EMBL CB684554 [ AAAACCCTAAATTACAATCAGGTCCTCGGCGGACGCCACCCCCAAATCTGAAACCCTCGCCGCCGCCGCCGCCGCGCGATCCCCCCCGGAATTCCATCGGATCGGCCCCCGCCTCTCCGGCGAGATGGGCATCTCGAGCATGCCGGCGCCCAAGGACAGCGTGGTGGCGTACCTGCTGTACAACACGGCGGTGTCGATCGCCATCCTGGCGGACATGGTGCGGGCGGCGCTGGTGTTCCTCGGCCTCCCCGTGCCGCCCTCGGCGTGGGAGGACGGCGACGACCAGCTGGCGGCGATCGCGGCGGCCGCCGCGGCCGCGGCCGCGGCGGCGGGGGGCCCGAGCCTGGCGGACAGGTTCCGGAGCAGGTTCAGGCCGGCGAGGTTCGGGCGGCG ] [+] EMBL BE230073 [ AATTACAATCAGGTCCTCGGCGGACGCCACCCCCAAATCTGAAACCCTCGCCGCCGCCGCCGCCGCGCGATCCCCCCCGGAATTCCATCGGATCGGCCCCCGCCTCTCCGGCGAGATGGGCATCTCGAGCATGCCGGCGCCCAAGGACAGCGTGGTGGCGTACCTGC ] [-] EMBL CB684555 [ TTCCGGAGCAGGTTCAGGCCGGCGAGGTTCGGGCGGCGGCGAGGCGGGGGCGCGGGCGCGGCCGACTGCCGCGTTTGCCTCGCGCGGTTCGAACCGGAGTCGGTGGTGAACCGCCTCCCCTGCGGCCACCTCTTCCACCGCGCCTGCCTCGAGAAGTGGCTCGATTACGACCACGCCACCTGCCCGTTCTGCCGCCACCGCCTCCTCCCCGCCACCACCGAGTCCCCCTCGCCGTCGCCGGCGACGGGGACCCCCCATTTCGCCCGGATTTAGAGAGATCTCCCCCCTTCAATCCGCCATTGGGCCGTGTGCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTCGTGTTGGTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATG ] [+] EMBL CA758235 [ GGCGACGGCGACCCCCCATTTCGCCCGGATTTAGAGAGATCTCCCCCCTTCAATCCGCCACTGGGCCGTGTGCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTTGTGTTGCTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCA CTTGTGTACAGGGCTTTTGGAAAGCGAAGAGATGAGAAGGAGAGAAAAAAAAATCATTGCCCAAAAAAAAAAAAAAAAAAAAATAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAGAAAAAAAAAAAAACCCTCGA] [+] EMBL AU174856 [ GCCACTGGGCCGTGTGCGCGTAGGAAAATTGAGAGGATCATTTAGCTCTAGTGCTAGCTCCATTTAGTGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTTGTGTTGCTGCTGTACCATTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCA CTTGTGTACAGGGCTTTTGGAAAGCGAAGAGATGAGAAGGAGAGAAAAAAAAATCATTGCCCAAAAAAAAAAAAAAAAAAAAAaa ] [+] EMBL BI800230 [ TGCTCCTTTTTCCCCCCACTTTCTTAATTTTTTTTTCACCTCTTTGCAGTGTTTTTTTTTACCATCTTCGAGTGGCCTTTTCTTTTCTTTTCTTTCTTTTTTTACTTCTTTGTGTTGCTGCTGTACCCTTGTAAATATTTGCAGAGTGCTCCGATCGATGGAGAGGTGTAGCACCTTGTGTACCGGGCTTTTGGAAAGCGAAGAGATGAGAAGGAGAGAAAAAAAAATCCTTGCCCCAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||