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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1722 fasta sequence
[TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG-GCC-ANGT-T-CGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGG-AAAGACTCCGCCGGCGTCGTNACCGCCTACTACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGAAACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCATCCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAGTTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATTGAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTTGGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTTCCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCTTTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAGTACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTCTCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGGACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG-TGGCGAGGAACCTCG-TCATCTA-CGACTACTGC-GACG-ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA]
[+] EMBL C25838 [TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG GCC ANGTNTNCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGG AAAGACTCCGCCGGCGTCGTNA ]
[+] EMBL AK073731 [ CTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT T CGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGAAACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCATCCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAGTTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATTGAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTTGGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTTCCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCTTTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAGTACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTCTCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGGACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG TGGCGAGGAACCTCG TCATCTA CGACTACTGC GACG ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTA ]
[+] EMBL AU172540 [ TCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG TGGCGAGGAACCTCG TCATCTA CGACTACTGC GACG ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA]
[+] EMBL AU082593 [ TGGGTTGGCGAGGAACCTCGTTCATTTACCGACTACTGCTGACGNACGGCAAGC GTTCCCNTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCG CNGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATG ]
[-] EMBL CF315085 [ GATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAAaa ]
[+] EMBL CF315084 [ GATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAAa ]
consensusID : consensus_10753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence
[TCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT-TCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTC-TTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG]
[+] EMBL AK111340 [TCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT TCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTC TTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG]
[+] EMBL C72892 [ CGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCG CGACGTNTCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGNACCNGAACGAGTTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGA ACCTANATCATCCAGACCAACGTGTACCGnacg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10753#0 TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCT 60
consensus_10753#1 ---------------------------TCACTATCGATCGACCTCTGCTGCTGCCTCGCT 33
*********************************
consensus_10753#0 GTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGC 120
consensus_10753#1 GTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGC 93
************************************************************
consensus_10753#0 TGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNT 180
consensus_10753#1 TGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGT 153
********************************************************** *
consensus_10753#0 GCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG-GCC-ANGTTCGGCGACAACT 238
consensus_10753#1 GCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGTTCGGCGACAACT 213
*************************************** *** * **************
consensus_10753#0 TCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACC 298
consensus_10753#1 TCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACC 273
************************************************************
consensus_10753#0 TCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGT 358
consensus_10753#1 TCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGT 333
******************** ***************************************
consensus_10753#0 GGTTCAGCATGAACCTCAAGCTCGCCGGAAA-GACTCCGCCGGCGTCGTNACCGCCTACT 417
consensus_10753#1 GGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACT 393
**************************** ** ***************** **********
consensus_10753#0 ACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGA 477
consensus_10753#1 AC---------------------------------------------------------- 395
**
consensus_10753#0 AACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCG 537
consensus_10753#1 ---------------------------------ATGTGCTCCGACGTGGACGCGGCGCCG 422
***************************
consensus_10753#0 CAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATC 597
consensus_10753#1 CAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATC 482
************************************************************
consensus_10753#0 CAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTC 657
consensus_10753#1 CAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTC 542
************************************************************
consensus_10753#0 GACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAA 717
consensus_10753#1 GACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAA 602
************************************************************
consensus_10753#0 GTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCAT 777
consensus_10753#1 GTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG----------------------- 639
*************************************
consensus_10753#0 CCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAG 837
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATT 897
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 GAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTT 957
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 GGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTT 1017
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 CCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCT 1077
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAG 1137
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTC 1197
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGG 1257
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 ACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGC 1317
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 ACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAG 1377
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 CCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGGTGGCGAGGAAC 1437
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 CTCGTCATCTACGACTACTGCGACGACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGC 1497
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCG 1557
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 TACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACT 1617
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 ACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCAT 1677
consensus_10753#1 ------------------------------------------------------------
consensus_10753#0 ATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA 1722
consensus_10753#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||