cluster # 10787

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Oryza sativa
cluster # 10787 cluster # 10787 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10787#0 length = 2087 sequences # 1

consensus_10787#1 length = 1606 sequences # 6
consensus_10787#2 length = 280 sequences # 1

consensusID : consensus_10787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2087
fasta sequence

                              [AAAAAAATCTTAATCAAGAGAGATTAATCGGTATACCCTCCGAGGTGGAATTGCTCGCCGAGGAGGAGGGAAGCCATGACGGCGACGAGGAGGGTTTGCACGGGCTGGTAGACGGCCACGAACACGGGGCCGCCGCGGTGGATGCACCACGTCTGCACGGCGAAGGCGACGCCCGAGGCGACGAATCCGGCGTAGAGGATGGTGAAGAGCTCGGAGCCGGAGCGGACGGCCCAGGCGGCGGCGTCGCGCTCCAGGAACGCGGCGATGGCGAGGAACTGGATGAGGCCGAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTAGCGCTTCAGCACCGGCGCCTGCAGCACCAGCCACCCCGACCACGACACGCAGTGCCCCAGCAGGAACACGCACCCCAGCGTCCAGCTCTTGTTGCCGGCGGCGACGGCGACGGCGAGCTGTTGCGGTTGCGGCTGGTGGTTGTGGTGGGTGTTGAAGATGGCGGGGCCCTTGAAGAGCGTGATGACGGAGGCGCCGGCGACGCAGAGCAGCGTGCCGGCGACCTTGGCGAGGCCGTCGCGGGAGGAGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAACGTCGGCGAGGTGTTCTCGAGCCCCAGCAGGTAGAAGCCCTGGTTGGCGGTGATCCCGCACAGCGCCAGGAAGAAGAACTGCACCGCCAAGCTCGCCGTCATGGCCGGCCTCTCCTTCCTGCAAGCATCCATGATTGATTGATTGATTAACTAGTTCATCATTCGTATCAGGAATTCAGGATTAGCGGCATTAGGCATCGATTAATTACTTCTCGAGGAAGTAGGCGAAGGGGGCGAGGAGGAAGAGGGCGATGAGGTTGCGGTAGACGGGGAAGACGAGCTTGCTGACGCCCATGTCCAGCGCCAGCCGCGACACCACGTGGAACCCGGCGTACCCGAGCTGCAGCGCCAGCATCGCCACGTGCAGCCGCGCGCCGCCGCCGGACGCCGCCGCCTTCCTCCCGCCCGCCGCCGCGTCCCCCATGATTGTCGTAGCTGGGCTAGCTAGCTCGTCGAGCTACGAGAGGAGAGCTGAGCTGAAGCAGTGAGACTGAGACTGAGACTGTGAGTGAGTTCTGCTGCACATGGCGGGCAGCATTGGCTGCTGAATTTATAGCGGCGATTGGATCGGAAAAAGACAGGTGGTGAGCTGTGCTTCTGCTGCTGCTGCTGCTGCAAATGGAGTTGAGCTCGTGTACTTTTCTGTCGTCTTCTTGTCTCTCTAGCTGCTGGAGTTGGAGATCACAACCTGATCATCAGTACAGTACAATACTGTACCTGACCCAGCTTTGCTGTCTACCGTCTACCACAGCTCAAAAGTCTGAAAAACCTCTTGAATTTCGAAACTTAATAATTGTATAGTTAATTTTGGGGGTCCTTTTTAGTGGTCTACTTTTAACATTGGCTTTTAAAATCATAAATAATCCGGATATAAAAGTTTTATCCATAAATTATTTTTCCGTTGCTTCGTTCATATTTTTACGCTTTATCAGAATAGAGCTAAGAGACTGAACTCTCTGAATCTGCTAAGCTAGGCTAAGTCATCTCAGCTCAGTAAACTGCCTGCAATTTTGTGCCATCTCCACATACAGAAACTGATACTCCGATCTTTCAGGTTCAAGTAGAGTCCATGTTCATGAATCATGACTGAAATCTCACCAAACAGGATGCTTTTAAGGGTACTGATCAAGGTGAGCTTTAGTTGCCCCTGTTCATCATAAGAGTGGTTGAATGAACCATGGGGACAAACACAGTGAGAAGAGAACACTGCCAAGGAGTACAGAGCATCAAACATGGTGTCAACTCATCTTCCTCAAGGACAGACATCACAGGTACAGCATCTCTCTTTTTTAAGACCTGCACCTACATGGATTTTTGCAGGATTATCCTCCTAATTACCTCTGCCATCTTGTATATAGTACTAGCTTGAGGTAAATCCATTGTAAAATTGCATTTGAAGGTAAATATAAATTTACTCAAAAAAAAAAAAAA]

[+] EMBL AK106679             [AAAAAAATCTTAATCAAGAGAGATTAATCGGTATACCCTCCGAGGTGGAATTGCTCGCCGAGGAGGAGGGAAGCCATGACGGCGACGAGGAGGGTTTGCACGGGCTGGTAGACGGCCACGAACACGGGGCCGCCGCGGTGGATGCACCACGTCTGCACGGCGAAGGCGACGCCCGAGGCGACGAATCCGGCGTAGAGGATGGTGAAGAGCTCGGAGCCGGAGCGGACGGCCCAGGCGGCGGCGTCGCGCTCCAGGAACGCGGCGATGGCGAGGAACTGGATGAGGCCGAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTAGCGCTTCAGCACCGGCGCCTGCAGCACCAGCCACCCCGACCACGACACGCAGTGCCCCAGCAGGAACACGCACCCCAGCGTCCAGCTCTTGTTGCCGGCGGCGACGGCGACGGCGAGCTGTTGCGGTTGCGGCTGGTGGTTGTGGTGGGTGTTGAAGATGGCGGGGCCCTTGAAGAGCGTGATGACGGAGGCGCCGGCGACGCAGAGCAGCGTGCCGGCGACCTTGGCGAGGCCGTCGCGGGAGGAGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAACGTCGGCGAGGTGTTCTCGAGCCCCAGCAGGTAGAAGCCCTGGTTGGCGGTGATCCCGCACAGCGCCAGGAAGAAGAACTGCACCGCCAAGCTCGCCGTCATGGCCGGCCTCTCCTTCCTGCAAGCATCCATGATTGATTGATTGATTAACTAGTTCATCATTCGTATCAGGAATTCAGGATTAGCGGCATTAGGCATCGATTAATTACTTCTCGAGGAAGTAGGCGAAGGGGGCGAGGAGGAAGAGGGCGATGAGGTTGCGGTAGACGGGGAAGACGAGCTTGCTGACGCCCATGTCCAGCGCCAGCCGCGACACCACGTGGAACCCGGCGTACCCGAGCTGCAGCGCCAGCATCGCCACGTGCAGCCGCGCGCCGCCGCCGGACGCCGCCGCCTTCCTCCCGCCCGCCGCCGCGTCCCCCATGATTGTCGTAGCTGGGCTAGCTAGCTCGTCGAGCTACGAGAGGAGAGCTGAGCTGAAGCAGTGAGACTGAGACTGAGACTGTGAGTGAGTTCTGCTGCACATGGCGGGCAGCATTGGCTGCTGAATTTATAGCGGCGATTGGATCGGAAAAAGACAGGTGGTGAGCTGTGCTTCTGCTGCTGCTGCTGCTGCAAATGGAGTTGAGCTCGTGTACTTTTCTGTCGTCTTCTTGTCTCTCTAGCTGCTGGAGTTGGAGATCACAACCTGATCATCAGTACAGTACAATACTGTACCTGACCCAGCTTTGCTGTCTACCGTCTACCACAGCTCAAAAGTCTGAAAAACCTCTTGAATTTCGAAACTTAATAATTGTATAGTTAATTTTGGGGGTCCTTTTTAGTGGTCTACTTTTAACATTGGCTTTTAAAATCATAAATAATCCGGATATAAAAGTTTTATCCATAAATTATTTTTCCGTTGCTTCGTTCATATTTTTACGCTTTATCAGAATAGAGCTAAGAGACTGAACTCTCTGAATCTGCTAAGCTAGGCTAAGTCATCTCAGCTCAGTAAACTGCCTGCAATTTTGTGCCATCTCCACATACAGAAACTGATACTCCGATCTTTCAGGTTCAAGTAGAGTCCATGTTCATGAATCATGACTGAAATCTCACCAAACAGGATGCTTTTAAGGGTACTGATCAAGGTGAGCTTTAGTTGCCCCTGTTCATCATAAGAGTGGTTGAATGAACCATGGGGACAAACACAGTGAGAAGAGAACACTGCCAAGGAGTACAGAGCATCAAACATGGTGTCAACTCATCTTCCTCAAGGACAGACATCACAGGTACAGCATCTCTCTTTTTTAAGACCTGCACCTACATGGATTTTTGCAGGATTATCCTCCTAATTACCTCTGCCATCTTGTATATAGTACTAGCTTGAGGTAAATCCATTGTAAAATTGCATTTGAAGGTAAATATAAATTTACTCAAAAAAAAAAAAAA]




>consensus_10787#0
AAAAAAATCTTAATCAAGAGAGATTAATCGGTATACCCTCCGAGGTGGAATTGCTCGCCG
AGGAGGAGGGAAGCCATGACGGCGACGAGGAGGGTTTGCACGGGCTGGTAGACGGCCACG
AACACGGGGCCGCCGCGGTGGATGCACCACGTCTGCACGGCGAAGGCGACGCCCGAGGCG
ACGAATCCGGCGTAGAGGATGGTGAAGAGCTCGGAGCCGGAGCGGACGGCCCAGGCGGCG
GCGTCGCGCTCCAGGAACGCGGCGATGGCGAGGAACTGGATGAGGCCGAAGAAGCAGGTG
TATGACGTCACCGACAGCCTCGCCGGGTAGCGCTTCAGCACCGGCGCCTGCAGCACCAGC
CACCCCGACCACGACACGCAGTGCCCCAGCAGGAACACGCACCCCAGCGTCCAGCTCTTG
TTGCCGGCGGCGACGGCGACGGCGAGCTGTTGCGGTTGCGGCTGGTGGTTGTGGTGGGTG
TTGAAGATGGCGGGGCCCTTGAAGAGCGTGATGACGGAGGCGCCGGCGACGCAGAGCAGC
GTGCCGGCGACCTTGGCGAGGCCGTCGCGGGAGGAGAGGCGGACGCGCTCGATGCGGAGC
GCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAACGTC
GGCGAGGTGTTCTCGAGCCCCAGCAGGTAGAAGCCCTGGTTGGCGGTGATCCCGCACAGC
GCCAGGAAGAAGAACTGCACCGCCAAGCTCGCCGTCATGGCCGGCCTCTCCTTCCTGCAA
GCATCCATGATTGATTGATTGATTAACTAGTTCATCATTCGTATCAGGAATTCAGGATTA
GCGGCATTAGGCATCGATTAATTACTTCTCGAGGAAGTAGGCGAAGGGGGCGAGGAGGAA
GAGGGCGATGAGGTTGCGGTAGACGGGGAAGACGAGCTTGCTGACGCCCATGTCCAGCGC
CAGCCGCGACACCACGTGGAACCCGGCGTACCCGAGCTGCAGCGCCAGCATCGCCACGTG
CAGCCGCGCGCCGCCGCCGGACGCCGCCGCCTTCCTCCCGCCCGCCGCCGCGTCCCCCAT
GATTGTCGTAGCTGGGCTAGCTAGCTCGTCGAGCTACGAGAGGAGAGCTGAGCTGAAGCA
GTGAGACTGAGACTGAGACTGTGAGTGAGTTCTGCTGCACATGGCGGGCAGCATTGGCTG
CTGAATTTATAGCGGCGATTGGATCGGAAAAAGACAGGTGGTGAGCTGTGCTTCTGCTGC
TGCTGCTGCTGCAAATGGAGTTGAGCTCGTGTACTTTTCTGTCGTCTTCTTGTCTCTCTA
GCTGCTGGAGTTGGAGATCACAACCTGATCATCAGTACAGTACAATACTGTACCTGACCC
AGCTTTGCTGTCTACCGTCTACCACAGCTCAAAAGTCTGAAAAACCTCTTGAATTTCGAA
ACTTAATAATTGTATAGTTAATTTTGGGGGTCCTTTTTAGTGGTCTACTTTTAACATTGG
CTTTTAAAATCATAAATAATCCGGATATAAAAGTTTTATCCATAAATTATTTTTCCGTTG
CTTCGTTCATATTTTTACGCTTTATCAGAATAGAGCTAAGAGACTGAACTCTCTGAATCT
GCTAAGCTAGGCTAAGTCATCTCAGCTCAGTAAACTGCCTGCAATTTTGTGCCATCTCCA
CATACAGAAACTGATACTCCGATCTTTCAGGTTCAAGTAGAGTCCATGTTCATGAATCAT
GACTGAAATCTCACCAAACAGGATGCTTTTAAGGGTACTGATCAAGGTGAGCTTTAGTTG
CCCCTGTTCATCATAAGAGTGGTTGAATGAACCATGGGGACAAACACAGTGAGAAGAGAA
CACTGCCAAGGAGTACAGAGCATCAAACATGGTGTCAACTCATCTTCCTCAAGGACAGAC
ATCACAGGTACAGCATCTCTCTTTTTTAAGACCTGCACCTACATGGATTTTTGCAGGATT
ATCCTCCTAATTACCTCTGCCATCTTGTATATAGTACTAGCTTGAGGTAAATCCATTGTA
AAATTGCATTTGAAGGTAAATATAAATTTACTCAAAAAAAAAAAAAA

consensusID : consensus_10787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1606
fasta sequence

                              [TTTTTTTTTTTTTTAGGTACAATGAAGCACACATGTAGGTACATTAATTATACAAAATGTAGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGCATGATCCAAACAAAACAAA-TCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA-TCGATATCATAGGCAAAGGCAAATCATCAACATCA-TTTGGTTCTCAACAAGCTAAGTCTGTAGTACTAGCAGCTAAT-CGATCGATCAAAT-GGCTCGAAGCATGCACGCATGTAATTAATAAAGAGACCGATCGATCGGTCAGACGGCGTTGTCGGAGGAGGAGGAGGTAGGCAGCAGGAGGGGCTGGGTGACGGAGGAGGACTGCTTGCCGGCGGCGATGATCCGGCAAGGGGCGGCGTCGCGGTCGGTGGCAATGGCGGCGGCGTCCTTGGCGAGGCGAGCACGCTCGTGGCTCTTGCCCCAGAGGACGAGGTAGAGGCCGGCGATGATGAAGACGGCGCCGATGATGCCGCCGAGGTAGAAGCTCTCGCCGAGGGTGAGGGAGGCCATGATGGCCACCACCAGGGTCTGGACGGGCTGATACACCGCCACGAACACCGGGCCCCCCCTGTCGATGCACCATATCTGCACCGCGAACGCCACCCCCGACGCGATGAATCCGGCGTAAAGGATGGTGAAGAGCTCGGAGCCGGAGTGGAAGGCCCAGGCGTCGGCGTCCCTCTCCATGAAGGCGGCGATGATGAGGAACTGGATGACGCCGAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTACTCCTTCAGCACCGGCGCCTGCAGCACCAGCCATCCCGACCACGACAGGCAGTGCCCGATCAAGTACACGCAGCCCAGCGTCCAGTTCTTCCCCTCTCCAGCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTGCAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCCGGCGACGCAGGCCAGCGTGCCGAGCACCTTGGCGACGCCGTCGCGGCGGTCGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAAGGTCGGGGAGGTGTTGTCGAGTCCGAGGAGGTAGAAGCCCTGGTTGGCGGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGCGGCCGATCCTTCTTCTCGAGGAAATAGGCGAAGGGGACGAGGAGGATGAGGGCGATGATGTTGCGGTAGACGGGGAAGACGAGCTTGCTGATGCCCATGTTGAGGGCAAACCGAGACACCACATGGAACCCCGCGTAGCCGAACTGCAGCGCCAGCATCGCCCCATGGAGCTGCACCCGCTCCGGCAACCCGCACACCTTCCGTGCATCCGCCTCCGCCGCCATTCTGATTCTAGCTATTCCCCGCCGGCTGGCCGGAAGCCCGGAAGGAGAAGCTCTCGATCGATCCCTCGCTAGCTAATTAGATAGCTAGGAATCGAGCTGGGGAGCTTAATTAGCTAGCTAGCAT]

[-] EMBL AU184695             [TTTTTTTTTTTTTTAGGTACAATGAAGCACACATGTAGGTACATTAATTATACAAAATGTAGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGCATGATCCAAACAAAACAAA TCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA TCGATATCATAGGCAAAGGCAAATCATCAACATCA TTNGGTTCTCAACAAGCTAAGTCTGTAGTACTAGCAGCTAAT CGATCGATCAAATGGGCTCGAAGCATGCACGCATGTAATTAATAAAGAGACCGATCGATCGGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU184667             [TTTTTTTTTTTTTTAGGGACAATGAAGCACACATGNAGGTGCATTAATTATACAAAATGTAGCACAAGCATCATTGAGCNATTAATCTCTCGNGACGTTACAAATTAAGAAAGCACAAGCNTGATCCAAACAAAACAAATTCCTAGCAAAACAAGCAAGCTACTAGNTAGTTTAATGTCGAGGCGATATNATAGGCAAAGGCAAATNATCAACATCATTTTGNTTCTCAACANGCTAAGTCTGGAGTACTAGCAGCTAATCCGATCGATCAAAT GGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AK071683             [                        AAGCACACATGTAGGTACATTAATTATACAAAATGTAGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGCATGATCCAAACAAAACAAA TCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA TCGATATCATAGGCAAAGGCAAATCATCAACATCA TTTGGTTCTCAACAAGCTAAGTCTGTAGTACTAGCAGCTAAT CGATCGATCAAAT GGCTCGAAGCATGCACGCATGTAATTAATAAAGAGACCGATCGATCGGTCAGACGGCGTTGTCGGAGGAGGAGGAGGTAGGCAGCAGGAGGGGCTGGGTGACGGAGGAGGACTGCTTGCCGGCGGCGATGATCCGGCAAGGGGCGGCGTCGCGGTCGGTGGCAATGGCGGCGGCGTCCTTGGCGAGGCGAGCACGCTCGTGGCTCTTGCCCCAGAGGACGAGGTAGAGGCCGGCGATGATGAAGACGGCGCCGATGATGCCGCCGAGGTAGAAGCTCTCGCCGAGGGTGAGGGAGGCCATGATGGCCACCACCAGGGTCTGGACGGGCTGATACACCGCCACGAACACCGGGCCCCCCCTGTCGATGCACCATATCTGCACCGCGAACGCCACCCCCGACGCGATGAATCCGGCGTAAAGGATGGTGAAGAGCTCGGAGCCGGAGTGGAAGGCCCAGGCGTCGGCGTCCCTCTCCATGAAGGCGGCGATGATGAGGAACTGGATGACGCCGAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTACTCCTTCAGCACCGGCGCCTGCAGCACCAGCCATCCCGACCACGACAGGCAGTGCCCGATCAAGTACACGCAGCCCAGCGTCCAGTTCTTCCCCTCTCCAGCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTGCAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCCGGCGACGCAGGCCAGCGTGCCGAGCACCTTGGCGACGCCGTCGCGGCGGTCGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAAGGTCGGGGAGGTGTTGTCGAGTCCGAGGAGGTAGAAGCCCTGGTTGGCGGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGCGGCCGATCCTTCTTCTCGAGGAAATAGGCGAAGGGGACGAGGAGGATGAGGGCGATGATGTTGCGGTAGACGGGGAAGACGAGCTTGCTGATGCCCATGTTGAGGGCAAACCGAGACACCACATGGAACCCCGCGTAGCCGAACTGCAGCGCCAGCATCGCCCCATGGAGCTGCACCCGCTCCGGCAACCCGCACACCTTCCGTGCATCCGCCTCCGCCGCCATTCTGATTCTAGCTATTCCCCGCCGGCTGGCCGGAAGCCCGGAAGGAGAAGCTCTCGATCGATCCCTCGCTAGCTAATTAGATAGCTAGGAATCGAGCTGGGGAGCTTAATTAGCTAGCTAGCAT]
[-] EMBL AK099177             [                        AAGCACACATGTAGGTACATTAATTATACAAAATGTAGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGCATGATCCAAACAAAACAAA TCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA TCGATATCATAGGCAAAGGCAAATCATCAACATCA TTTGGTTCTCAACAAGCTAAGTCTGTAGTACTAGCAGCTAAT CGATCGATCAAAT GGCTCGAAGCATGCACGCATGTAATTAATAAAGAGACCGATCGATCGGTCAGACGGCGTTGTCGGAGGAGGAGGAGGTAGGCAGCAGGAGGGGCTGGGTGACGGAGGAGGACTGCTTGCCGGCGGCGATGATCCGGCAAGGGGCGGCGTCGCGGTCGGTGGCAATGGCGGCGGCGTCCTTGGCGAGGCGAGCACGCTCGTGGCTCTTGCCCCAGAGGACGAGGTAGAGGCCGGCGATGATGAAGACGGCGCCGATGATGCCGCCGAGGTAGAAGCTCTCGCCGAGGGTGAGGGAGGCCATGATGGCCACCACCAGGGTCTGGACGGGCTGATACACCGCCACGAACACCGGGCCCCCCCTGTCGATGCACCATATCTGCACCGCGAACGCCACCCCCGACGCGATGAATCCGGCGTAAAGGATGGTGAAGAGCTCGGAGCCGGAGTGGAAGGCCCAGGCGTCGGCGTCCCTCTCCATGAAGGCGGCGATGATGAGGAACTGGATGACGCCGAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTACTTCTTCAGCACCGGCGCCTGCAGCACCAGCCATCCCGACCACGACAGGCAGTGCCCGATCAAGTACACGCAGCCCAGCGTCCAGTTCTTCCCCTCTCCGGCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTGCAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCCGGCGACGCAGGCCAGCGTGCCGAGCACCTTGGCGACGCCGTCGCGGCGGTCGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAAGGTCGGGGAGGTGTTGTCGAGTCCGAGGAGGTAGAAGCCCTGGTTGGCGGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGCGGCCGATCCTTCTTCTCGAGGAAATAGGCGAAGGGGACGAGGAGGATGAGGGCGATGATGTTGCGGTAGACGGGGAAGACGAGCTTGCCGATGCCCATGTTGAGGGCAAACCGAGACACCACATGGAACCCCGCGTAGCCGAACTGCAGCGCCAGCATCGCCCCATGGAGCTGCACCCGCTCCGGCAACCCGCACACCTTCCGTGCATCCGCCTCCGCCGCCATTCTGATTCTAGCTATTCCCCGCCGGCTGGCCGGAAGCCCGGAAGGAGAAGCTCTCGATCGATCCCTCGCTAGCTAATTAGATAGCTAGGAATCGAGCTGGGGAGCTTAATTAGCTAGC      ]
[-] EMBL AU032069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCACCGGCGCCTGCAGCACCAGCCATCCCGACCACGACAGNCAGTGCCCGATCAAGTACACGCAGCCCAGCGTCCAGTTCTTCCCCTCTCC GCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTGCAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCCGGCGACGCAGGCCAGCGTGCCGAGCACCTT GCGAC CCGTCGCGGCGGTCGAGGCGGACGCGCTCGATGCGGAGCGCGGCGGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AU098334             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGATGCGGAGCGCGGCGNCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGATGGCGGAGGCGAAGGTCGGGGAGGTGTTNTCGAGTCCGAGGAGGTAGAAGCCCTGGTTGGCGGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGCGGCCGATCCTTCTTCTCGAGGAAATAGGCGAAGGGGACGAGGAGGATGAGGGCGATGA                                                                                                                                                                                                                                                                                                  ]




>consensus_10787#1
TTTTTTTTTTTTTTAGGTACAATGAAGCACACATGTAGGTACATTAATTATACAAAATGT
AGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGC
ATGATCCAAACAAAACAAATCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA
TCGATATCATAGGCAAAGGCAAATCATCAACATCATTTGGTTCTCAACAAGCTAAGTCTG
TAGTACTAGCAGCTAATCGATCGATCAAATGGCTCGAAGCATGCACGCATGTAATTAATA
AAGAGACCGATCGATCGGTCAGACGGCGTTGTCGGAGGAGGAGGAGGTAGGCAGCAGGAG
GGGCTGGGTGACGGAGGAGGACTGCTTGCCGGCGGCGATGATCCGGCAAGGGGCGGCGTC
GCGGTCGGTGGCAATGGCGGCGGCGTCCTTGGCGAGGCGAGCACGCTCGTGGCTCTTGCC
CCAGAGGACGAGGTAGAGGCCGGCGATGATGAAGACGGCGCCGATGATGCCGCCGAGGTA
GAAGCTCTCGCCGAGGGTGAGGGAGGCCATGATGGCCACCACCAGGGTCTGGACGGGCTG
ATACACCGCCACGAACACCGGGCCCCCCCTGTCGATGCACCATATCTGCACCGCGAACGC
CACCCCCGACGCGATGAATCCGGCGTAAAGGATGGTGAAGAGCTCGGAGCCGGAGTGGAA
GGCCCAGGCGTCGGCGTCCCTCTCCATGAAGGCGGCGATGATGAGGAACTGGATGACGCC
GAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTACTCCTTCAGCACCGGCGC
CTGCAGCACCAGCCATCCCGACCACGACAGGCAGTGCCCGATCAAGTACACGCAGCCCAG
CGTCCAGTTCTTCCCCTCTCCAGCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTG
CAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCC
GGCGACGCAGGCCAGCGTGCCGAGCACCTTGGCGACGCCGTCGCGGCGGTCGAGGCGGAC
GCGCTCGATGCGGAGCGCGGCGGCCATGGCGAAGGTGATGGCCGGGACGGAGTTCTGGAT
GGCGGAGGCGAAGGTCGGGGAGGTGTTGTCGAGTCCGAGGAGGTAGAAGCCCTGGTTGGC
GGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGCGG
CCGATCCTTCTTCTCGAGGAAATAGGCGAAGGGGACGAGGAGGATGAGGGCGATGATGTT
GCGGTAGACGGGGAAGACGAGCTTGCTGATGCCCATGTTGAGGGCAAACCGAGACACCAC
ATGGAACCCCGCGTAGCCGAACTGCAGCGCCAGCATCGCCCCATGGAGCTGCACCCGCTC
CGGCAACCCGCACACCTTCCGTGCATCCGCCTCCGCCGCCATTCTGATTCTAGCTATTCC
CCGCCGGCTGGCCGGAAGCCCGGAAGGAGAAGCTCTCGATCGATCCCTCGCTAGCTAATT
AGATAGCTAGGAATCGAGCTGGGGAGCTTAATTAGCTAGCTAGCAT

consensusID : consensus_10787#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [CGGTCNCTTTATTAATTACATGCGTGCATGCTTCGAGCCATTTGATCGATCGATTAGCTGCTAGTACTACAGACTTAGNTTGTTGAGAACCAAATGATGTTGATGATTTGCCTTTGCCTATGATATCGATCGACATTAAACTAGCTAGTAGCTTGCTTGTTTTGCTAGGATTTGTTTTGTTTGGATCATGCTTGTGCTTTCTTAATTTGTAACGTCGCGAGAGATTAATTGCTCAATGATGCTTGTGCTACATTTTGTNTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU030842             [CGGTCNCTTTATTAATTACATGCGTGCATGCTTCGAGCCATTTGATCGATCGATTAGCTGCTAGTACTACAGACTTAGNTTGTTGAGAACCAAATGATGTTGATGATTTGCCTTTGCCTATGATATCGATCGACATTAAACTAGCTAGTAGCTTGCTTGTTTTGCTAGGATTTGTTTTGTTTGGATCATGCTTGTGCTTTCTTAATTTGTAACGTCGCGAGAGATTAATTGCTCAATGATGCTTGTGCTACATTTTGTNTAAAAAAAAAAAAAAAAAAAA]




>consensus_10787#2
CGGTCNCTTTATTAATTACATGCGTGCATGCTTCGAGCCATTTGATCGATCGATTAGCTG
CTAGTACTACAGACTTAGNTTGTTGAGAACCAAATGATGTTGATGATTTGCCTTTGCCTA
TGATATCGATCGACATTAAACTAGCTAGTAGCTTGCTTGTTTTGCTAGGATTTGTTTTGT
TTGGATCATGCTTGTGCTTTCTTAATTTGTAACGTCGCGAGAGATTAATTGCTCAATGAT
GCTTGTGCTACATTTTGTNTAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      TTTTTTTTTTTTTTAGGTACAATGAAGCACACATGTAGGTACATTAATTATACAAAATGT 60
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      AGCACAAGCATCATTGAGCAATTAATCTCTCGCGACGTTACAAATTAAGAAAGCACAAGC 120
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      ATGATCCAAACAAAACAAATCCTAGCAAAACAAGCAAGCTACTAGCTAGTTTAATGTCGA 180
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      TCGATATCATAGGCAAAGGCAAATCATCAACATCATTTGGTTCTCAACAAGCTAAGTCTG 240
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      TAGTACTAGCAGCTAATCGATCGATCAAATGGCTCGAAGCATGCACGCATGTAATTAATA 300
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      AAGAGACCGATCGATCGGTCAGACGGCGTTGTCGGAGGAGGAGGAGGTAGGCAGCAGGAG 360
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      GGGCTGGGTGACGGAGGAGGACTGCTTGCCGGCGGCGATGATCCGGCAAGGGGCGGCGTC 420
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ------------------------------------------------------------
consensus_10787#1      GCGGTCGGTGGCAATGGCGGCGGCGTCCTTGGCGAGGCGAGCACGCTCGTGGCTCTTGCC 480
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      -------------AAAAAAATCTTAATCAAGAGAGATTAATCGGTATACCCTCCGAGGTG 47
consensus_10787#1      CCAGAGGACGAGGTAGAGGCCGGCGATGATGAAGACGGCGCCGATGATGCCGCCGAGGTA 540
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GAATTGCTCGCCGAGGAGGAGGGAAGCCATGACGGCGACGAGGAGGGTTTGCACGGGCTG 107
consensus_10787#1      GAAGCTCTCGCCGAGGGTGAGGGAGGCCATGATGGCCACCACCAGGGTCTGGACGGGCTG 600
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GTAGACGGCCACGAACACGGGGCCGCCGCGGTGGATGCACCACGTCTGCACGGCGAAGGC 167
consensus_10787#1      ATACACCGCCACGAACACCGGGCCCCCCCTGTCGATGCACCATATCTGCACCGCGAACGC 660
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GACGCCCGAGGCGACGAATCCGGCGTAGAGGATGGTGAAGAGCTCGGAGCCGGAGCGGAC 227
consensus_10787#1      CACCCCCGACGCGATGAATCCGGCGTAAAGGATGGTGAAGAGCTCGGAGCCGGAGTGGAA 720
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GGCCCAGGCGGCGGCGTCGCGCTCCAGGAACGCGGCGATGGCGAGGAACTGGATGAGGCC 287
consensus_10787#1      GGCCCAGGCGTCGGCGTCCCTCTCCATGAAGGCGGCGATGATGAGGAACTGGATGACGCC 780
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTAGCGCTTCAGCACCGGCGC 347
consensus_10787#1      GAAGAAGCAGGTGTATGACGTCACCGACAGCCTCGCCGGGTACTCCTTCAGCACCGGCGC 840
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CTGCAGCACCAGCCACCCCGACCACGACACGCAGTGCCCCAGCAGGAACACGCACCCCAG 407
consensus_10787#1      CTGCAGCACCAGCCATCCCGACCACGACAGGCAGTGCCCGATCAAGTACACGCAGCCCAG 900
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CGTCCAGCTCTTGTTGCCGGCGGCGACGGCGACGGCGAGCTGT--TGCGGTTGCGGCTGG 465
consensus_10787#1      CGTCCAGTTCTTCCCCTCTCCAGCGATCGCCGCCCTCAACGGCACCTCCGCCACCGCCTG 960
consensus_10787#2      -----------------------------------------------------CGGTCNC 7
                                                                            * *    

consensus_10787#0      TGGTTGTGG-TGGGTGTTGAAGATGGCGGGGCCCTTGAAGAGCGTGATGACGGAGGCGCC 524
consensus_10787#1      CAGCTGCAGCTTGGGACCGAAGATGGTAGGGCCCTTGTAGAGCGTGATGACGGAGGCGCC 1020
consensus_10787#2      T--TTATTAATTACATGCGTGCATGCTTCGAGCCATTTGAT---CGATCGATTAGCTGCT 62
                           *     *       *   ***    *  ** *         ***     **  ** 

consensus_10787#0      GGCGACGCAGAGC-AGCGTGCCGGCGACCTTGGCGAGGCCGTCGCGGGAGGAGAGGCGGA 583
consensus_10787#1      GGCGACGCAGGCC-AGCGTGCCGAGCACCTTGGCGACGCCGTCGCGGCGGTCGAGGCGGA 1079
consensus_10787#2      AGTACTACAGACTTAGNTTGTTGAGAACCA-AATGATGTTGATG-ATTTGCCTTTGCCTA 120
                        *     ***    **  **  *   ***     ** *  *  *     *     **  *

consensus_10787#0      CGCGCTCGATGCGGAGCGCGGCGGCCA-TGGCGAAGGTGATGGCCGGGACGGAGTTCTGG 642
consensus_10787#1      CGCGCTCGATGCGGAGCGCGGCGGCCA-TGGCGAAGGTGATGGCCGGGACGGAGTTCTGG 1138
consensus_10787#2      TGATATCGATCGACATTAAACTAGCTAGTAGCTTGCTTGTTTTGCTAGGATTTGTTTTGT 180
                        *   *****    *        ** * * **     ** *   *  *     *** ** 

consensus_10787#0      ATGGCGGAGGCGAACGTCGGCGAGGTGTTCTCGAGCCCCAGCAGGTAGAAGCCCTGGTTG 702
consensus_10787#1      ATGGCGGAGGCGAAGGTCGGGGAGGTGTTGTCGAGTCCGAGGAGGTAGAAGCCCTGGTTG 1198
consensus_10787#2      TTGGATCATGCTTGTGCTTTCTTAAT-TTGTAACGTCGCGAGAGATT-AATTGCTCAATG 238
                        ***   * **    *         * ** *   * *     ** *  **   **   **

consensus_10787#0      GCGGTGATCCCGCACAGCGCCAGGAAGAAGAACTGCACCGCCAAGCTCGCCGTCATGGCC 762
consensus_10787#1      GCGGTGATGCCGCACAGCGCCAGCAGGAAGAACTGCACCACGAAGCTCAGCGTCAGCTGC 1258
consensus_10787#2      ATGCTTGTGCTACATTTTGTNTAAAAAAAAAAAAAAAAAAAA------------------ 280
                         * *  * *  **    *     *  ** **    *                       

consensus_10787#0      GGCCTCTCCTTCCTGCAAGCATCCATGATTGATTGATTGATTAACTAGTTCATCATTCGT 822
consensus_10787#1      GGCCGATCCTTC------------------------------------------------ 1270
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ATCAGGAATTCAGGATTAGCGGCATTAGGCATCGATTAATTACTTCTCGAGGAAGTAGGC 882
consensus_10787#1      -------------------------------------------TTCTCGAGGAAATAGGC 1287
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GAAGGGGGCGAGGAGGAAGAGGGCGATGAGGTTGCGGTAGACGGGGAAGACGAGCTTGCT 942
consensus_10787#1      GAAGGGGACGAGGAGGATGAGGGCGATGATGTTGCGGTAGACGGGGAAGACGAGCTTGCT 1347
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GACGCCCATGTCCAGCGCCAGCCGCGACACCACGTGGAACCCGGCGTACCCGAGCTGCAG 1002
consensus_10787#1      GATGCCCATGTTGAGGGCAAACCGAGACACCACATGGAACCCCGCGTAGCCGAACTGCAG 1407
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CGCCAGCATCGCCACGTGCAGCCGCGCGCCGCCGCCGGACGCCGC-CGCCTTCCTCCCGC 1061
consensus_10787#1      CGCCAGCATCGCCCCATGGAGCTGCAC-CCGCTCCGGCAACCCGCACACCTTCCGTGCAT 1466
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CCGCCGCCGCGTCCCCCATGATTGTCGTAGCTGGGCTAGCTAGCTCGTCG-AGCTACGAG 1120
consensus_10787#1      CCGCCTCCGCCGCCATTCTGATTCTAGCTATT--CCCCGCCGGCTGGCCGGAAGCCCGGA 1524
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      AGGAGAGCTGAGCTGAAGCAGTGAGACTGAGACTGAGACTGTGAGTGAGTTCTGCTGCAC 1180
consensus_10787#1      AGGAGAA--GCTCTCGATCGATCCCTCGCTAGCTAATTAGATAGCTAGGAATCG----AG 1578
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ATGGCGGGCAGCATTGGCTGCTGAATTTATAGCGGCGATTGGATCGGAAAAAGACAGGTG 1240
consensus_10787#1      CTGGGGAGCTTAATTAGCTAGCTAGCAT-------------------------------- 1606
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GTGAGCTGTGCTTCTGCTGCTGCTGCTGCTGCAAATGGAGTTGAGCTCGTGTACTTTTCT 1300
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GTCGTCTTCTTGTCTCTCTAGCTGCTGGAGTTGGAGATCACAACCTGATCATCAGTACAG 1360
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      TACAATACTGTACCTGACCCAGCTTTGCTGTCTACCGTCTACCACAGCTCAAAAGTCTGA 1420
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      AAAACCTCTTGAATTTCGAAACTTAATAATTGTATAGTTAATTTTGGGGGTCCTTTTTAG 1480
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      TGGTCTACTTTTAACATTGGCTTTTAAAATCATAAATAATCCGGATATAAAAGTTTTATC 1540
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CATAAATTATTTTTCCGTTGCTTCGTTCATATTTTTACGCTTTATCAGAATAGAGCTAAG 1600
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      AGACTGAACTCTCTGAATCTGCTAAGCTAGGCTAAGTCATCTCAGCTCAGTAAACTGCCT 1660
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      GCAATTTTGTGCCATCTCCACATACAGAAACTGATACTCCGATCTTTCAGGTTCAAGTAG 1720
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      AGTCCATGTTCATGAATCATGACTGAAATCTCACCAAACAGGATGCTTTTAAGGGTACTG 1780
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ATCAAGGTGAGCTTTAGTTGCCCCTGTTCATCATAAGAGTGGTTGAATGAACCATGGGGA 1840
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CAAACACAGTGAGAAGAGAACACTGCCAAGGAGTACAGAGCATCAAACATGGTGTCAACT 1900
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CATCTTCCTCAAGGACAGACATCACAGGTACAGCATCTCTCTTTTTTAAGACCTGCACCT 1960
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      ACATGGATTTTTGCAGGATTATCCTCCTAATTACCTCTGCCATCTTGTATATAGTACTAG 2020
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      CTTGAGGTAAATCCATTGTAAAATTGCATTTGAAGGTAAATATAAATTTACTCAAAAAAA 2080
consensus_10787#1      ------------------------------------------------------------
consensus_10787#2      ------------------------------------------------------------
                                                                                   

consensus_10787#0      AAAAAAA 2087
consensus_10787#1      -------
consensus_10787#2      -------