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Oryza sativa
cluster # 10789 cluster # 10789       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10789#0 length = 2198 sequences # 6  
consensus_10789#1 length = 298 sequences # 2  

consensusID : consensus_10789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2198
fasta sequence
                              [AATCCGGTCCCTCGCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCCAATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCCAGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAGGATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCGGGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTCCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCATGCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTTTCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGATCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCATGAGATGATGAGAACAAATAATCGCTGTAAAAGGTTGAGATCATGCCCCCCT]

[+] EMBL AK119236             [AATCCGGTCCCTCGCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCCAATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCCAGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAGGATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCGGGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTCCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCATGCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTTTCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGATCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGA                                                                                                                                                                                                                                                     ]
[+] EMBL AK067438             [ ATCCGGTCCCTCGCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCCAATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCCAGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAGGATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCGGGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTCCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCATGCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTTTCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGATCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCATGAGATGATGAGAACAAATAATCGCTGTAAAAGGTTGAGATCATGCCCCCCT]
[+] EMBL AK099191             [             GCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCCAATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCCAGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAGGATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCGGGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTCCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTACTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCATTAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCATGCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGAAGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGAGGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGCCTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTTACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTATTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCATACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGATCCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTTGGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGAGACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTTTCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGTAGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGATCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAATGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGTAACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAG GGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCGACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACA                                                                           ]
[+] EMBL CB000246             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACATGTTATTCCCAGGCTGCTCTTGGCTGTGCCTTTAAGCTAGTTGAGATAAACAGTAGACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATGTTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGAACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAATACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCATGAG                                                ]
[+] EMBL OSR00931A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACCATCACCGAA GCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTG AGCATAGCAAAATAGCAATACATCAAAGGAAAGTAGAGCTCTGTTGTAAAAAAAT AAAAAAATCGTCAGTTCATGGG                                                                                                                                                                                                            ]
[+] EMBL OSR0139A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACCATCACCGNA GCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAGAGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGAGCTGAATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTNTNAGTCCAAAGCTGTATGAGTTTATCCATTCCCTA                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_10789#0 AATCCGGTCCCTCGCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCC AATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCC AGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAG GATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCG GGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTC CATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTA CTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCAT TAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCAT GCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGA AGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGA GGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGC CTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTT ACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTA TTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCAT ACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGAT CCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTT GGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGA GACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTT TCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGT AGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGA TCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAA TGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAAT TGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGT AACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAG ACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATG TTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGA ACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAG AGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATC AAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACA GCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAG TGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGG AGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCA TAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAAT CGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAAC TAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACT ATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCATGAGATGATGAGAA CAAATAATCGCTGTAAAAGGTTGAGATCATGCCCCCCT



consensusID : consensus_10789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 298
fasta sequence
                              [AGAANTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAANTAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031640             [AGAANTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAANTAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031647             [                                TGAAGCNTAGCAAAATNGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGNGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAACATCCTTTTTGGTGATTTGAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10789#1 AGAANTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAANTAGCAATACATCA AAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACC TTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTTATCAGTATAGAGATAG GCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTATGGAATTGAA CATCCTTTTTGGAGATTTGAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10789#0      AATCCGGTCCCTCGCCTCGCCTCGCGTCTCCTCCTCCTCCTCCTTCCCCTCCCCGCCTCC 60
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AATTTCTTCCTACTCCTCCCGCCTCCCCGCGAAGCTTCCCCACGCCTCAGCCGCCAATCC 120
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AGCCCTAGTGTGGCGGCGGCGGCGGCGGCTTCTAGAAGCCCTCCTCTTCCCGGACTCCAG 180
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GATGGCGGCGGTGGCGGGTAGCGCGAGCGCAGGCGCCAACGGTTCGGCGGCGGCGCATCG 240
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GGTGGGGGCGCCGACGAACCCCATGGCGACGGCGCTGCTCACCGATCAGTACCAGTTCTC 300
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      CATGGCCTACGCCTACTGGAAGGCCGGCAAGCACGCCGACCGAGCCGTGTTTGATCTGTA 360
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      CTTCAGGAAAAATCCATTTGGTGGAGAATTCACTGTTTTTGCTGGTCTTGAAGAATGCAT 420
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TAAGTTCATTGCAAATTTTAAGTTCACAGAAGATGACATTTTGTTCCTGCAATCAGTCAT 480
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GCCAATGTGTGAGGATGCGTTCTTTGATTATCTCAGGAAAACCGACTGCTCTGATGTGGA 540
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AGTGTACTCCATTCCTGAGGGTTCAGTGGTTTTTCCAAAAGTTCCTTTGATGCGAGTTGA 600
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GGGTCCAGTTGCTGTGGTCCAACTACTTGAGACACCGTTTGTAAATCTTATCAATTATGC 660
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      CTCTTTGGTAACAACAAATGCTGCGAGACACCGCCATGTTGCTGGAAAATCAAAAGTTTT 720
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      ACTGGAATTTGGTTTGAGACGAGCACAGGGGCCTGACGGTGCAATAAGTGCTTCAAAGTA 780
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TTGTTTCATGGGAGGTTTTGATGCAACCAGTAATGTTTTGGCTGGAAATCTGTTTGGCAT 840
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      ACCACTTCGCGGAACACATTCTCATGCTTATGTTAGCTCATATATGAGCCTTGATGAGAT 900
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      CCCAGACAAGTCCCTCAAGAGCAAAGATGGTTCAAGAGTCTGCAAAGATTTTGTTAGTTT 960
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GGTAAAAGAGTGGCTTCAAAAGATTCAGTTAGCAGATTCGTTATGTGGTGTATTTGGTGA 1020
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GACAAATCAAAGTGAGCTGGCAGCATTTGCATCCTATGCATTGGCTTTTCCGACCAATTT 1080
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TCTAGCTCTTGTGGACACATATGATGTTATGCGAAGTGGAATTCCAAACTTCTGTGCAGT 1140
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AGCGCTAGCACTCCATGACTTAGGGTACAAGGCATCTGGTATTAGATTAGATTCTGGTGA 1200
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TCTGGCCTATTTGTCTATTGAGGCCCGTAAAGTGTTCCGTACACTAGAAAAGGAGTTTAA 1260
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TGTGCCCGCTTTTGGGAAGATGATAATTACTGCTAGCAATGACCTGAATGAGGAAACAAT 1320
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TGATGCCCTGAACAAGCAGGGCCATGAAGTTGATTCCTTTGGTATTGGAACTTATCTAGT 1380
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AACATGTTATTCCCAGGCTGCTCTTGGCTGTGTCTTTAAGCTAGTTGAGATAAACAGTAG 1440
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      ACCTCGTATCAAACTTTCTGAGGATGTGGCTAAAGTATCCATTCCATGCAAAAAGCGATG 1500
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TTTCAGATTGTATGGAAAAGAAGGCTACCCCTTAGTAGATATCATGATGCGTGAAAGTGA 1560
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      ACCATCACCGAAGGCTGGAGAACGAATCCTTTGTCGTCATCCATTCCTTGAATCCAAGAG 1620
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AGCATATGTTGTCCCCCAGCATGTTGAGGAGCTCCTACAATGCTACTGGCCTGGTACATC 1680
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGGGCGCTGCATGCAACA 1740
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      GCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAG 1800
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      TGTGAGTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGG 1860
consensus_10789#1      ------------------------------------------------------------
                                                                                   

consensus_10789#0      AGAGTTACAATAGATTTCTACAGAAGTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCA 1920
consensus_10789#1      ---------------------AGAANTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCA 39
                                            **** **********************************

consensus_10789#0      TAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAAT 1980
consensus_10789#1      TAGCAAANTAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAAAAAAATAAAAAAAAT 99
                       ******* ****************************************************

consensus_10789#0      CGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAAC 2040
consensus_10789#1      CGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAAC 159
                       ************************************************************

consensus_10789#0      TAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACT 2100
consensus_10789#1      TAGTTATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACT 219
                       ************************************************************

consensus_10789#0      ATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCATGAGATGATGAGAA 2160
consensus_10789#1      ATACGTCGTTATGGAATTGAACATCCTTTTTGGAGATTTGAGTCCAAAAAAAAAAAAAAA 279
                       **********************************************  * *  *  * **

consensus_10789#0      CAAATAATCGCTGTAAAAGGTTGAGATCATGCCCCCCT 2198
consensus_10789#1      AAAAAAAAAAAAAAAAAAA------------------- 298
                        *** **       ****                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)