Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10792 cluster # 10792       Sequences # 8       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10792#0 length = 1455 sequences # 8  
consensusID : consensus_10792#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1455
fasta sequence 
                              [GATCAATTCATCTCATCGTCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATCGCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTCGCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCATCATATTCCAGCAACCAGTACAGATC-TTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCGGCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCACGCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGACGGCACGCCGGAGCTCCTCCG-CCACGTCCTCGTCGTCGCCATGGATCCCACCGCGCTCACCCGGTGCCGCGCCGTCCACCCCCACTGCTACCTCTACACCATGCCCGGCCTCGACGTCGACTTCACCTCCGAGAAGTTCTTCGCCTCCAAGGACTACCTCGAGCTCGTCTGGAGCAAGCTCAAGCTCCAGCGCCGAATTCTCCAGCTCGGCTACAACTTCCTCTTCACGGACGTTGACATTGTGTGGCTGAGGAAT-CCGTTCAAGCACGTGGCGGTGTACGCGGACATGGCGATCT-CGAGCGACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATATGATATGATAGTA]

[+] EMBL AK105978             [GATCAATTCATCTCATCGTCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATCGCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTCGCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCATCATATTCCAGCAACCAGTACAGATC TTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCGGCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCACGCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGACGGCACGCCGGAGCTCCTCCG CCACGTCCTCGTCGTCGCCATGGATCCCACCGCGCTCACCCGGTGCCGCGCCGTCCACCCCCACTGCTACCTCTACACCATGCCCGGCCTCGACGTCGACTTCACCTCCGAGAAGTTCTTCGCCTCCAAGGACTACCTCGAGCTCGTCTGGAGCAAGCTCAAGCTCCAGCGCCGAATTCTCCAGCTCGGCTACAACTTCCTCTTCACGGACGTTGACATTGTGTGGCTGAGGAAT TCGTTCAAGTACGTGGCGGTGTACGCGGACATGGCGATCT CGAGCGACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGTTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATATGATATGATAGTA]
[+] EMBL AK071606             [    AATTCATCTCATCGTCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATCGCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTCGCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTTTACTGCATCTTCACCAACTCATCATATTCCAGCAACCAGTACAGATC TTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCGGCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCACGCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGACGGCACGCCGGAGCTCCTCCG CCACGTCCTCGTCGTCGCCATGGATCCCACCGCGCTCACCCGGTGCCGCGCCGTCCACCCCCACTGCTACCTCTACACCATGCCCGGCCTCGACGTCGACTTCACCTCCGAGAAGTTCTTCGCCTCCAAGGACTACCTCGAGCTCGTCTGGAGCAAGCTCAAGCTCCAGCGCCGAATTCTCCAGCTCGGCTACAACTTCCTCTTCACGGACGTTGACATTGTGTGGCTGAGGAAT CCGTTCAAGCACGTGGCGGTGTACGCGGACATGGCGATCT CGAGCGACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATATGATATGATAGTA]
[+] EMBL CA756070             [                  TCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATCGCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTCGCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCATCATATTCCAGCAACCAGTACAGATC TTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCGGCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCACGCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGACGGCACGCCGGAGCTCCTCCGNCCACGT CTCGTCGTCGCCATGGATCCCACCGCGCTCACCCGGTGCCGCGCCGTCCACCCCCACTGCTACCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS4914A             [                  TCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGNCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGNTCACCGTCATGCTGCTCTTCCAGTACCAGGNGCCG CGGACTACGGTCGCG CGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGGCG CGNCGCCGGTGATCGCACGTGGCGNCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGTTGTCGNCGAGGAGCAGCCGGCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCATCATATTNCAGCAACCAGTACAGATCTTTGAAGAAGAGGGCGNCGAGTTCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS5069A             [                   CCATGGNGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCNTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCNCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGNGGCGGCAATGGAACGGNGCCGC  CCGNCGGTGATCGCANGTNGCGGCNNGGAGGCTAACATCACCGGCAAGNCTCCGACGNCTGCTACTGCTGTAGCCGAGGAGCAGCCGCCAACCAAGCCTTCTGCGACCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK104518             [                              AAGGTGGCGGTCACGGAGGCGACGGGGCGGCAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAGTACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCCAGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATCGCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTCGCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCATCATATTCCAGCAACCAGTACAGATC TTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCGGCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCACGCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGACGGCACGCCGGAGCTCCTCCG CCACGTCCTCGTCGTCGCCATGGATCCCACCGCGCTCACCCGGTGCCGCGCCGTCCACCCCCACTGCTACCTCTACACCATGCCCGGCCTCGACGTCGACTTCACCTCCGAGAAGTTCTTCGCCTCCAAGGACTACCTCGAGCTCGTCTGGAGCAAGCTCAAGCTCCAGCGCCGAATTCTCCAGCTCGGCTACAACTTCCTCTTCACGGACGTTGACATTGTGTGGCTGAGGAAT CCGTTCAAGCACGTGGCGGTGTACGCGGACATGGCGATCT CGAGCGACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATATCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATATG           ]
[+] EMBL AU078282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACTTCCTCTTCACGGACGTTGACATTGTTTGGCTGAGGAATCCCGTTCAAGCACGTGCCGGTGTACGCGGACATGGCGATCTCCGAGCGACGTGTTCTTCGGTGACCCGNACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATAaaaa         ]
[+] EMBL AU078281             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTTCCTCTTCACGGACGTTGACATTGTGTGGCTGAGGAAT CCGTTCAAGCACGTGGCGGTGTACGCGGACATGGCGATCT CGAGCGACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTACGTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCGCACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAGCTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGCAAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAGATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGGGCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCGATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACATGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTATATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGATAaaaa         ]




>consensus_10792#0
GATCAATTCATCTCATCGTCCATGGCGCCCAAGGTGGCGGTCACGGAGGCGACGGGGCGG
CAGGCGGCGTCGTTCGTGCTCGGCTGCGTGGCCACGCTCACCGTCATGCTGCTCTTCCAG
TACCAGGCGCCGCCGGACTACGGCCGCGCCGCCAGGTCGCCGGTGCAGTTCTCCACCTCC
AGAGACCAGCTGCTGCTGCACTGCGGCGGCAATGGAACGGCGCCGCCGCCGCCGGTGATC
GCACGTGGCGGCGAGGAGGCTAACATCACCGGCAAGCCTCCGACGACTGCTACTGCTGTC
GCCGAGGAGCAGCCGCCAACCAAGCCTCCTGCGACCTCTACTGCATCTTCACCAACTCAT
CATATTCCAGCAACCAGTACAGATCTTGAAGAAGAGGGCGGCGAGTTCCGGGGGTTGGCG
GCGGCGGTGGCGCGGGCGGCGACGGATGACCGGACGGTGATCATCACGTGCGTGAACCAC
GCGTTCGCGGCGCCCGACTCGCTCCTGGACATCTTCCTCCAGGGCTTCCGCGTCGGCGAC
GGCACGCCGGAGCTCCTCCGCCACGTCCTCGTCGTCGCCATGGATCCCACCGCGCTCACC
CGGTGCCGCGCCGTCCACCCCCACTGCTACCTCTACACCATGCCCGGCCTCGACGTCGAC
TTCACCTCCGAGAAGTTCTTCGCCTCCAAGGACTACCTCGAGCTCGTCTGGAGCAAGCTC
AAGCTCCAGCGCCGAATTCTCCAGCTCGGCTACAACTTCCTCTTCACGGACGTTGACATT
GTGTGGCTGAGGAATCCGTTCAAGCACGTGGCGGTGTACGCGGACATGGCGATCTCGAGC
GACGTGTTCTTCGGTGACCCGGACAACATCGACAACTTCCCAAACACGGGCTTCTTCTAC
GTGAAGCCGAGCGCGAGGACGATCGCCATGACCAAGGAGTGGCACGAGGCGAGGAGCTCG
CACCCGGGGCTCAACGAGCAGCCGGTGTTCAACCACATCAAGAAGAAGCTGGTGAAGAAG
CTGAAGCTCAAGGTTCAGTACCTGGACACGGCCTACATCGGCGGATTCTGCAGCTACGGC
AAGGATCTGAGCAAGATCTGCACCATGCACGCCAACTGCTGCATCGGCCTCCAATCCAAG
ATCAGTGATCTCAAGGGTGTTCTTGCTGACTGGAAGAACTACACCAGGTTGCCACCCTGG
GCAAAGCCCAATGCCAGGTGGACTGTGCCTGGTAAATGCATCCATTGATTTTGATTGTCG
ATCGGGCAGTATCTGGTGTTGTAGGCTACGTACAGTCAGGAAGATAGCTTTATTTGCACA
TGAAAGGGCGAATTTTGTTTTTTTTGGTTTGTTGTAGATTGATGGGTCGATTTCAAGTTA
TATTACTGTATACCTGACGGCAGACAAGTATACGCATGATGGGCAAACTATATGATATGA
TATGATATGATAGTA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)