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Oryza sativa
cluster # 10796 cluster # 10796       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10796#0 length = 1670 sequences # 5  
consensus_10796#1 length = 680 sequences # 2  
consensus_10796#2 length = 500 sequences # 1  

consensusID : consensus_10796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1670
fasta sequence
                              [CCGCCCTTCTGTTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACANCCATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGCTCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTAT-CCGGTGGGAGTATGGCTTCCTTGGCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGGCAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGTGCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACCCTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGC-AAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCTTTTGCGAGATAAAACCCAAGGAGAAGAGAAAAGGAAATACTGGGGCACTTATA]

[+] EMBL OSS10471A            [CCGCCCTTCTGTTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACANCATTGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGNCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCAGCATCCGNTCCTAGAGGTTGGAGCNCAGGGTTGGGGTTGTTGTATNNCGGTGGGAGTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK112068             [         TGCTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACAGCCATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGCTCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTAT CCGGTGGGAGTATGGCTTCCTTGGCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGGCAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGTGCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACCCTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGC AAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCT                                                                     ]
[+] EMBL CB624063             [                                                          CCATGCCTTTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCTCTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGCTCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTAT CCGGTGGGAGTATGGCTTCCTTGGCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGGCAAGAGTAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGTGCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACCCTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACACGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATAC       CAGATAATACTTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGC AAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGGACTGTTGGTATTAAACAAGAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB624064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTGTTTGTGAATGC TGCAAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTCGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACC TTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTG                                                                                                             ]
[-] EMBL CB681166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCTTTTGCGAGATAAAACCCAAGGAGAAGAGAAAAGGAAATACTGGGGCACTTATA]


>consensus_10796#0 CCGCCCTTCTGTTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACANCC ATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCT CTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGC TCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTATCCGGTGGGAGTATGGCTTCCTTG GCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGG CAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCG GACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGT GCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACC CTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACA CGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTA TGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAA TGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAAT GCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCC AGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACT TGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGG GCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTA CTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAG AGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCAT AAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAA GGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAAC AGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGT CAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGG GGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATT TACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAG CTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCATAGA TGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCT GTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCTTTT GCGAGATAAAACCCAAGGAGAAGAGAAAAGGAAATACTGGGGCACTTATA



consensusID : consensus_10796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence
                              [TTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCCCTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCCCAAAATTTTGTGTGCCCCCTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTAAAAAAAAAAAAAA]

[-] EMBL CA762479             [TTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCCCTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCCCAAAATTTTGTGTGCCCCCTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTAAAAAAAAAAAAAA]
[-] EMBL CA762478             [TTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATAATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGGAGGGGAGATTCAAGCCCTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTAATTTACCTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAATTAGCTCGGTAATTAGTGAGGTATCTCCCCAAAATTTTGTGTGCCCCCTCTATTATTGCATAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGGTCTGTAAAAAAAAAAAAAA]


>consensus_10796#1 TTTGGGCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCT GCTTACTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATA GTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAAT GTCATAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTT GAGAAGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTA GCAACAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAGATA ATGGTCAAGGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTAT GGAGGGGAGATTCAAGCCCTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAG TAATTTACCTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAA TTAGCTCGGTAATTAGTGAGGTATCTCCCCAAAATTTTGTGTGCCCCCTCTATTATTGCA TAGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTG GTCTGTAAAAAAAAAAAAAA



consensusID : consensus_10796#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [TTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGANGTGGATGATATCAAGGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGTATTGGTGTATTAGATGAATTTTTTTTTTCTTATTCTATTTCTGCAAGTGTTTCTTCATCTTTGGCACAAATTTTTCTGTACTCATGTAAAACCAGATAGCCATAGTGTGACTATAATATGTC]

[+] EMBL CF322665             [TTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGANGTGGATGATATCAAGGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCCAAAGGTATTGGTGTATTAGATGAATTTTTTTTTTCTTATTCTATTTCTGCAAGTGTTTCTTCATCTTTGGCACAAATTTTTCTGTACTCATGTAAAACCAGATAGCCATAGTGTGACTATAATATGTC]


>consensus_10796#2 TTTATGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGA AGAATGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCA AAATGCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGC TTCCAGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGA AACTTGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAAT TTGGGCATGGANGTGGATGATATCAAGGGAGTGGATATTATCAAAGCTCCCTCTGGGGCC TGCTTACTATCCAAAGGTATTGGTGTATTAGATGAATTTTTTTTTTCTTATTCTATTTCT GCAAGTGTTTCTTCATCTTTGGCACAAATTTTTCTGTACTCATGTAAAACCAGATAGCCA TAGTGTGACTATAATATGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10796#0      CCGCCCTTCTGTTGCGGCGAGCCACACTCCCAAGCCGAGGAGCTCTCGCTTGCGACANCC 60
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      ATGGAGCTAGGCCTCGCGCTGCGGCTCGTCGCGCCGCCGCCTCGTCTCCCCTGTAGAGCT 120
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      CTCCAGCCGCCGCCGATGCCTTGTTTCTCTCCGTGTGCGGCCCGAAGAAGCCGCATCCGC 180
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TCCTCGAGGTTGGAGCGCAGGGTTGGGGTTGTTGTATCCGGTGGGAGTATGGCTTCCTTG 240
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      GCAATGGAGGAGGAGGAAGAGGAAGAGTGGGAAGAAGCGGAGGAAGAAGCGGAAGGATGG 300
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      CAAGAGGAGGAGGCTGCAGTGGTGACGACGAGGCCGCGTCTGGAGCTCATCGAGAAGCCG 360
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      GACCGGAGCCTGTGTCTGCTCGACGAGTACGAGTCGGAGGAGCTAGGCACCTCTCATTGT 420
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      GCCAACCACCGCAGCGGTTATGTTGCTGTATTAGGAAAGCCAAATGTTGGAAAGAGCACC 480
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      CTAATTAACCAAATTGTTGGTCAGAAACTTTCAATTGTGACAGACAAACCGCAAACCACA 540
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      CGGCATCGCATTCTTGGTATATGTTCTGAACCAGAATACCAGTTTGCAGATAATACTTTA 600
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TGACACGCCAGGTGTCATCAAAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAA 660
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TGTTAGGAGTGCCGTTGGCAGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAAT 720
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      GCCTGAAAAGATTGATGAAATACTGGAAGAAGGTGTGGGGAACAAAGATACTGAGCTTCC 780
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      AGTACTGTTGGTATTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACT 840
consensus_10796#1      ------------------------------------------------------------
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TGAGTGGTATCAAAAATTCACTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGG 900
consensus_10796#1      -------------------------------------------------------TTTGG 5
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      GCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTA 960
consensus_10796#1      GCATGGAGTGGATGATATCAAGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTA 65
consensus_10796#2      ----------------------------------TTTATGACACGCCAGGTGTCA--TCA 24
                                                         *  * *   *  * ** * *   * *

consensus_10796#0      CTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAG 1020
consensus_10796#1      CTATCCAAAGGACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAG 125
consensus_10796#2      AAAAGGAAATGCATAAGCTAGACACAATGATGATGAAGAATGT-TAGGAGTGCCGTTGGC 83
                         *   *** *    ******  *  *   ***   *   * * * ** *      **  

consensus_10796#0      AGAAAAGATTTT-TCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCA 1079
consensus_10796#1      AGAAAAGATTTT-TCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGGTTAATGTCA 184
consensus_10796#2      AGTGCAGATTGTGTGCTTGTTGTTGTTGATGCTTGCAAAATGCCTGAAAAGAT----TGA 139
                       **   ***** * *  *   * * **  *    * * * **** **  * * *    * *

consensus_10796#0      TAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGA 1139
consensus_10796#1      TAAGTTACAAGAGCAGACCTACAGCCAAGGATTTTATTCAAGTTGAGATACTCGTTGAGA 244
consensus_10796#2      TGAAATACTGGAA-GAAGGTGTGGGGAACAAAGATACTGAGCTTCCAGTACT-GTTGGTA 197
                       * *  ***  **    *  *   *  **  *   ** * *  **    **** ****  *

consensus_10796#0      AGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAA 1199
consensus_10796#1      AGGAATCACAAAGAAGCATTATACTTGGGAAGGATGGAAAAGCAATCAAGATGCTAGCAA 304
consensus_10796#2      TTAAACAAGAAAGATCTCATAAAGCCAGGAGAAATTGCAAAGAAACTTGAGTGGTATCAA 257
                          **  * *****     ** *    ***   ** * **** **      ** ** ***

consensus_10796#0      CAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAG-ATAATG 1258
consensus_10796#1      CAGCATCAAGACTTGATATCGAGGATTTCCTACAAAAGAAGGTCTATCTTGAG-ATAATG 363
consensus_10796#2      AAAT-TCA----CTAATGCTGATGACGTCATACCTATAAGTGCTAAATTTGGGCATGGAN 312
                        *   ***     * **   ** **  ** ***  *  *  *   *  *** * **    

consensus_10796#0      GTCAA-GGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGG 1317
consensus_10796#1      GTCAA-GGTGAAGGAAAACTGGCGGCAGGATGAACTTCTTTTGAAGCGTTATGGCTATGG 422
consensus_10796#2      GTGGATGATATCAAGGGAGTGGATATTATCAAAGCTCCCTCTGGGGCCTGCTTACTATCC 372
                       **  * * *        * ***          * ** * * **  ** *  *  ****  

consensus_10796#0      AGGGGAGATTCAAGCACTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTA 1377
consensus_10796#1      AGGGGAGATTCAAGCCCTATGACCATCAGATTGTTATGCAGGCTGTCACAGCTAGGAGTA 482
consensus_10796#2      AAAGGT-ATTGGTGTATTA-GATGAATTTTTTTTTTCTTATTCTATTTCTGCAAGTGTTT 430
                       *  **  ***   *   ** **  *     ** **    *  ** *  * ** **   * 

consensus_10796#0      ATTTACCTTTTTTTTTCTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAAT 1437
consensus_10796#1      ATTTACCTTTTTTTT-CTGTTAGCTTTGTTTATGATTGAGGTGATGAGTGAAGGTCGAAT 541
consensus_10796#2      CTTCATCTTTGGCAC------AAATTTTTCTGT-ACTCATGTAAAACCAGATAGCCATAG 483
                        ** * ****           *  *** * * * * * * ** *     **  * *  * 

consensus_10796#0      TAGCTCGGTAATTAGTGAGGTATCTCCACAAAATTTTGTGTGCCCACTCTATTATTGCAT 1497
consensus_10796#1      TAGCTCGGTAATTAGTGAGGTATCTCCCCAAAATTTTGTGTGCCCCCTCTATTATTGCAT 601
consensus_10796#2      TGTGACTATAATATGTC------------------------------------------- 500
                       *    *  ****  **                                            

consensus_10796#0      AGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGG 1557
consensus_10796#1      AGATGTACATCTGTTGTATCATGAAACTGATGTTTCTAATAGAAAGAAACATAGTTCTGG 661
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TCTGTATCATTGGATGGTTGAAAGCCAAGTCAGTACTAGTAGCTGATTGGAGGCAATCCT 1617
consensus_10796#1      TCTGTAAAAAAAAAAAAAA----------------------------------------- 680
consensus_10796#2      ------------------------------------------------------------
                                                                                   

consensus_10796#0      TTTGCGAGATAAAACCCAAGGAGAAGAGAAAAGGAAATACTGGGGCACTTATA 1670
consensus_10796#1      -----------------------------------------------------
consensus_10796#2      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)