These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 566 fasta sequence [CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG-ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG-ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG-ATGTAAAG-AATGTGGGTAACACTACCCTTTACATCACTCTATCT-TCCTTG-TCCCATGCATTGTTTACTCCAAT-AATTATTAACTTTTCAAGTTTTCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA] [+] EMBL BI305713 [CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTTTTCAAGTTT ] [+] EMBL BU673019 [ gcataccTGCGGTTGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCGCACGACTTTATACAGCCGCTTGTTTCTCACGTCGCGGCATAGCAGCTGCACTATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGATACGCGCACCTCATGTAGCATGTAAAGCAATGTGGGTAACACTACCCTATACATCACTCTATCTATCCTTGATCCCATGCATTGTTTACTACACTAAATAATTAACTTAACACGTTATCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA] [+] EMBL BU673720 [ CTCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT ] [+] EMBL CB966946 [ TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT ] [+] EMBL CB964754 [ CGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTT ] [+] EMBL BI305811 [ GTCGAGGGGCTCATGTTTGGGAACCCTCTC TCATGTTGCCCATCTTCACGGACC AGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAATTCTTGTCGTAATGGCTACGCGCACCTCATGTTG ATGTAAAG AATGTGGGTAACACTACCCTTTACATCACTCTATCT TCCTTG TCCCATGCATTGTTTACTCCAAT AATTATTAACTTTTCAAGTTT ] [+] EMBL CB965532 [ GTCGAGGGGCTCATG TTGGGAACCCTCTCATCATG TGCCCATCTTCACGGACCAA GGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCAGGTGAGGCGGGATGACACGGACGGGTCGTTCGACCGCCATGGCGTCGCAGCCGCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCGTAGCAAGCGCCCTCAGGATGCAAAAGATTGTCACTGACAAGGAACTCCATGAGAGGTACATCG ACGACTTTATACAGCAGCTTGTTTCTCACGTCGCGG ATAGCAGCTGCAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGA ] consensusID : consensus_10802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCATGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCGTCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGCAGGTACCATCGGCACGCACTTCATACAG] [+] EMBL CB966237 [TCGTCGAGGGGCTCATGTTTGGGAACCCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGTAACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCATGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCGTCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGCAGGTACCATCGGCACGCACTTCATACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10802#0 CTCCTTAAGGAATAAGCTTGCGGCCGCAACTCGCTCGTCGAGGGGCTCATGTTTGGGAAC 60 consensus_10802#1 ----------------------------------TCGTCGAGGGGCTCATGTTTGGGAAC 26 ************************** consensus_10802#0 CCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGT 120 consensus_10802#1 CCTCTCATCATGTTGCCCATCTTCACGGACCAAGGGCCGAACGCGCGGCTCATGGAGGGT 86 ************************************************************ consensus_10802#0 AACAAGGTAGGGTTGC-AGGTG-AGGCGGGATG-ACACGG-ACGGGTCGTTCGACCGCCA 176 consensus_10802#1 AACAAGGTAGGGTTGCCAGGTGCAGGCGGGATGCACACGGCACGGGTCGTTCGCACGCCA 146 **************** ***** ********** ****** ************ ***** consensus_10802#0 TGGCGTCGCAGCC-GCGGTCCGGGCCGTCATGGTGGAGGAAGAAACCAGGAGGGTGTTCG 235 consensus_10802#1 TGGCGTCGCAGCCTGCGGTCCGGGCCGTCATGGTGGAGGAAGCAAACAGGAGGGTGTTCG 206 ************* **************************** ** ************** consensus_10802#0 TAGCAAGCGCCCTCAGGATGCAAAAG--ATTGTCACTG-ACAAGGAAC--TCCATGAG-- 288 consensus_10802#1 TCACAAGCGCCCTCAGGATGCAACAAGCATTGTCACTGCACAAGGCACACTCCATGCAGC 266 * ******************** * ********** ****** ** ****** consensus_10802#0 AGGTAC-ATCGACG---ACTTTATACAGCAGCTTGTTTCTCACGTCGCGGATAGCAGCTG 344 consensus_10802#1 AGGTACCATCGGCACGCACTTCATACAG-------------------------------- 294 ****** **** * **** ****** consensus_10802#0 CAATATTGCCACACCAGTTCCTTCCAGTTCTAGCTGAGATTATTTCTCTGTTGCTGTAAT 404 consensus_10802#1 ------------------------------------------------------------ consensus_10802#0 TCTTGTCGTAATGGCTACGCGCACCTCATGTTGATGTAAAGAATGTGGGTAACACTACCC 464 consensus_10802#1 ------------------------------------------------------------ consensus_10802#0 TTTACATCACTCTATCTTCCTTGTCCCATGCATTGTTTACTCCAATAATTATTAACTTTT 524 consensus_10802#1 ------------------------------------------------------------ consensus_10802#0 CAAGTTTTCCCTCGTACCGAATACTTGGCCTCGGAGGGCCAA 566 consensus_10802#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||