Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10803 cluster # 10803       Sequences # 8       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10803#0 length = 1387 sequences # 8  
consensusID : consensus_10803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1387
fasta sequence 
                              [TCTTTTTATTGGAACAAAGATTGTAAACTGAATTTTATTAACCTCTATGGTCTGAATATTGCCGTCAAATTGACAAGCAGAATTGCTGAGA-AAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATATTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT-GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGATCCGATGCATATCGTAGTAGGACGGATCCGGCATGATCTTCTCCTTCTTCTTGTCAAACATGAAGGGATGAGCCAAGCCTCTGATGTGGATCCCAGAGCTTCTCAGCACTCCGGTCACCAGAGGTCCGAGCTCAAACCCCAACAGCATGTGGTACCCAACAATCACTGCAGGACCTTGCTTGGGTAGGCCTGACAAACCCCTCACAATCTTTCCATCAGGCAGTGTTGATAGCATCACTGGGTTTGCTATGTACTGCAACATCCTGATGTGATCAGTTGCCTTCTGAAATTCATCAGGAGTCAGTGGCAGATAGTCCGAAACAAAGTCCGTCTCCAACGAGCGGCGATAGTACCCAGCTCCTTTGATGGCCGTTGCCAGATCAAATTCAGCTTCCAGCAATATTTTGTGACCGTTGTCTTTGAAATTACGGATTCTGCATTTCTCTAGAGCGTCACGTAGCCTTTCAGCTTCTTCTCTGGCTTGGTAGCAGTTCATCATTCCAACTAGCAAGCACCAAAGTCTGCGCTTTAACTGCATGCAAACGGGAATTGACAAATGATGACGCTGTTCTCAGCATTTTGGGCTTC]

[+] EMBL CB649096             [TCTTTTTATTGGAACAAAGATTGTAAACTGAATTTTATTAACCCCTATGGGCTGAATATTGCCGTCAAATTGACAAGCAGAATTGCTGAGAGAAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGATCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATACTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGATCCGATGCATATCGTAGTAGGACGGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CA765887             [             nCAAAGATTGTAAACTGAATTTTATTAACCTCTATGGTCTGAATATTGCCGTCAAATTGACAAGCAGAATTGCTGAGA AAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATATTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTTTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB635827             [                AAGATTGTAAACTGAATTTTATTAACTTCTATGGTCTGAATATTGCCGTCAAATTGACAAGCAGAATTGCTGAGA AAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATATTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BI811801             [                ttttTTGTAAACTGAATTTTATTAACCTCTATGGTCTGAATATTGCCGTCAAA TGACAAGCAGAATTGCTGAGA AAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATATTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTGGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTTGGGGGCAG CACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BI812114             [                ttttTTGTAAACTGAATTTTATTAACCTCTATGGTCTGAATATTGCCGTCAAA TGACAAGCAGAA TGCTGAGA AAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATATTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTGGTCTCTTAGTTCCTTTTCTCTCCCTCTGGTTTCAATGGGCTTCCCAAAGATGAAATAAAACCTCCCg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB669780             [                               ATTTTATTAACCTCTATGGTCTGAATATTGCCGTCAAATTGACAAGCAGAATTGCTGAGAGAAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGATCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATACTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB668280             [                                               TGGTCTGAATATTGCCCCCTAAATGACCACCAGAATTGCTGAGAGAAAAAAACTGATAACTATGTGAAACAAAAATGCATGAAACAATACCCACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGACCATCTTAGTTCTCACGGATCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGATAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATACTTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTGTCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAACCTCCCTGGTATCTTT GGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCGGTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAGAATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGATCCGATGCATATCGTAGTAGGACGGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB668279             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCTTCTCCAACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGACTGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCTCCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTGACAGGCACGGCGCCCATGATCCGATGCATATCGTAGTAGGACGGATCCGGCATGATCTTCTCCTTCTTCTTGTCAAACATGAAGGGATGAGCCAAGCCTCTGATGTGGATCCCAGAGCTTCTCAGCACTCCGGTCACCAGAGGTCCGAGCTCAAACCCCAACAGCATGTGGTACCCAACAATCACTGCAGGACCTTGCTTGGGTAGGCCTGACAAACCCCTCACAATCTTTCCATCAGGCAGTGTTGATAGCATCACTGGGTTTGCTATGTACTGCAACATCCTGATGTGATCAGTTGCCTTCTGAAATTCATCAGGAGTCAGTGGCAGATAGTCCGAAACAAAGTCCGTCTCCAACGAGCGGCGATAGTACCCAGCTCCTTTGATGGCCGTTGCCAGATCAAATTCAGCTTCCAGCAATATTTTGTGACCGTTGTCTTTGAAATTACGGATTCTGCATTTCTCTAGAGCGTCACGTAGCCTTTCAGCTTCTTCTCTGGCTTGGTAGCAGTTCATCATTCCAACTAGCAAGCACCAAAGTCTGCGCTTTAACTGCATGCAAACGGGAATTGACAAATGATGACGCTGTTCTCAGCATTTTGGGCTTC]




>consensus_10803#0
TCTTTTTATTGGAACAAAGATTGTAAACTGAATTTTATTAACCTCTATGGTCTGAATATT
GCCGTCAAATTGACAAGCAGAATTGCTGAGAAAAAAAACTGATAACTATGTGAAACAAAA
ATGCATGAAACAATATAAACAATTGACTTGAATGTACTCCTATCTAATTCTGCAAGTGAC
CATCTTAGTTCTCACGGTTCAAATGTGGGAACTTCTGCATCAAGACCATGAACCATCTGA
TAGAGAAGCCTGGCGAGTATATTCCTGTAAGGGTCCTTCTCTCTTTTCTCCTTTAGATAT
TTCATGCAGCTCTCAACTTCGGACTTAACATTCAGGTAGAGGTGTTGGGCGTTCTCTTTG
TCTCTTAGTTCCTTTTCTCTCCCTCTTGTTTCAATTGGCTTCCCAAAGATGAAATAAAAC
CTCCCTGGTATCTTTGGGGCAGCCACTACTGGATGGATTCTTTGATATTTTAATTCTCCG
GTAGAATCAGTCCTTAGTTTCACACCATCTTCATTTAGCATCCTGTCAAGGATGTCATAG
AATGGAATCTTCATAAGATCGTCGTAGTCTAACAACATATCACATATATCATCTTCTCCA
ACTACTCCAAATGGTATTATTGTTGCTCCAAACCTTGATGCCATCCTCACAAATTCAGAC
TGCTCTGGCCAAAACAACTTATACTCCTCTCCCTTTCTATGAAGCGCTTCTCGCGCGCCT
CCCGGGTACAGCAACACGAAGTGCTTCTCCGCGAGAAGCTTGTAAAAATTGCCTGCGGTG
ACAGGCACGGCGCCCATGATCCGATGCATATCGTAGTAGGACGGATCCGGCATGATCTTC
TCCTTCTTCTTGTCAAACATGAAGGGATGAGCCAAGCCTCTGATGTGGATCCCAGAGCTT
CTCAGCACTCCGGTCACCAGAGGTCCGAGCTCAAACCCCAACAGCATGTGGTACCCAACA
ATCACTGCAGGACCTTGCTTGGGTAGGCCTGACAAACCCCTCACAATCTTTCCATCAGGC
AGTGTTGATAGCATCACTGGGTTTGCTATGTACTGCAACATCCTGATGTGATCAGTTGCC
TTCTGAAATTCATCAGGAGTCAGTGGCAGATAGTCCGAAACAAAGTCCGTCTCCAACGAG
CGGCGATAGTACCCAGCTCCTTTGATGGCCGTTGCCAGATCAAATTCAGCTTCCAGCAAT
ATTTTGTGACCGTTGTCTTTGAAATTACGGATTCTGCATTTCTCTAGAGCGTCACGTAGC
CTTTCAGCTTCTTCTCTGGCTTGGTAGCAGTTCATCATTCCAACTAGCAAGCACCAAAGT
CTGCGCTTTAACTGCATGCAAACGGGAATTGACAAATGATGACGCTGTTCTCAGCATTTT
GGGCTTC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)