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Oryza sativa
cluster # 10813 cluster # 10813       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10813#0 length = 1330 sequences # 8  

consensusID : consensus_10813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1330
fasta sequence
                              [TCCTGGGCTTTTTAGTCTACTCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAAGATTCAGAGAGAGAGAGAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCAGAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGCTACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCA-TTCAGTGCGTGCGAATGCATTTAGAGAA-CACCAAATCACAGATTGGTAGCCCTGCAAAAACATA-TTCTG-CCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGTGAAATCCAACCCGGCACCAGTGCTCAGT-GTAACAAATGGATCAAAAACTGAT-TTGAACACAGAAGT-GCTGAATGTTTTCCGCGA-ACCAGCAAACGT-CGAGAGCGAGCA-TGGTGTGC-ACA-TTGATGAAATCGTGAAGCGCTTCAGGCTA-CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGACAAAACATATAATATATGTATGTTTGTTGTTTTGCAGCATCAGCATTATTTGGACTGTAACATGCTTGATTGATCTCTTTGGATGCAGTTAATTTCATTGTGATATTAACTCACGCATCATCGATCGATCGTGTGTTTTTTGGTAGCTAGATGGTCCAATCACAATAATCT]

[+] EMBL AU162293             [TCCTGGGCTTTTTAGTCTACTCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAANATTCAGAGAGAGNGANAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCA AACTCTGGCATCACCGGGGAGAAGGGC NT CCTTCGTCGTCNA GGCGT GAGACAG CAACGTTAGct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK103235             [           TTAGTCTACTCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAAGATTCAGAGAGAGAGAGAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCAGAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGCTACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCA TTCAGTGCGTGCGAATGCATTTAGAGAA CACCAAATCACAGATTGGTAGCCCTGCAAAAACATA TTCTG CCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGTGAAATCCAACCCGGCACCAGTGCTCAGT GTAACAAATGGATCAAAAACTGAT TTGAACACAGAAGT GCTGAATGTTTTCCGCGA ACCAGCAAACGT CGAGAGCGAGCA TGGTGTGC ACA TTGATGAAATCGTGAAGCGCTTCAGGCTA CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGACAAAACATATAATATATGTATGTTTGTTGTT                                                                                                                                            ]
[+] EMBL OSA278822            [                caACTCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGACTGAAAGAAAGATTC  AGAGAGAGAGAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCAGAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGCTACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCA TTCAGTGCGTGCGAATGCATTTAGAGAA CACCAAATCACAGATTGGTAGCCCTGCAAAAACATA TTCTG CCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGTGAAATCCAACCCGGCACCAGTGCTCAGT GTAACAAATGGATCAAAAACTGAT TTGAACACAGAGGT GCTGAATGTTTTCCGCGA ACCAGCAAACGT CGAGAGCGAGCA TGGTGTGC ACA TTGATGAAATCGTGAAGCGCTTCAGGCTA CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGACAAAACATATAATATATGTATGTTTGTTGTTTTGCAGCATCAGCATTATTTGGACTGTAACATGCTTGATTGATCTCTTTGGATGCAGTTAATTTCATTGTGATATTAACTCACGCATCATCGATCGATCGTGTGTTTTTTGGTAGCTAGATGGTCCAATCACAATAATCT]
[+] EMBL AB037145             [                    TCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAAGATTCAGAGAGAGAGAGAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCATGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCAGAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGCTACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCA TTCAGTGCGTGCGAATGCATTTAGAGAA CACCAAATCACAGATTGGTAGCCCTGCAAAAACATA TTCTG CCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGTGAAATCCAACCCGGCACCAGTGCTCAGT GTAACAAATGGATCAAAAACTGAT TTGAACACAGAAGT GCTGAATGTTTTCCGCGA ACCAGCAAACGT CGAGAGCGAGCA TGGTGTGC ACA TTGATGAAATCGTGAAGCGCCTCAGGCTA CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGACAAAACATATAATCTATGTATGTTTGTTGTTTTGCAGCAaaaaaaa                                                                                                                             ]
[+] EMBL AU183932             [                                       CATCAACCCCGCCGCCGCCGCCGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAAGATTCAGAGAGAGAGAGAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTCCTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCACCATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA756655             [                                                                                                                                                                                                                                                                                   AGCAATCTGGCACCACCGGGGAGAAGGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGTCAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCGCCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCAGAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGCTACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCA TTCAGTGCGTGCGAATGCATTTAGAGAA CACCAAATCACAGATTGGTGGCCCTGCAAAAACATA TTCTG CCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCNACCTCCGTGAAATCCAACCCGGCACCAGTGCTCAGT GTAACAAATGGATCAAAAACTGAT TTGAACACAGAGGT GCTGAATGTTTTCCGCGA ACCAGCANACGT CGAGAGCGAGCA TGGTGTGC ACA TTGATGAAATCGTGAAGCGCTTCAGGCTA CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTTACATTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU030219             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGAGNTCACACTGCATTTCATTTCAGTGCGTGCGAATGCATTTAGAGAACCACCAAATCACAGATTGGTANCCCTGCAAAAACATATTTCTGCCCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTNTGAAATCCAACCCGGCACCAGTGCTCAGT GTAACAAATGGATCAAAAACTGAT TTGAACACAGAAGT GCTGAATGTTTTCCGCGA ACCAGCAAACGT CGAGAGCGAGCA TGGTGTGC ACA TTGATGAAATCGTGAAGCGCTTCAGGCTA CCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGACAAAACATATAATATATGTATGTTTGTTGTTTTGCAGCAaaaaa                                                                                                                               ]
[+] EMBL BI796818             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTCAGTGGTAACAAATGGATCGAAAACTGATGTTGAACACAGAGGTGGCTGAATGTTTTCC CGATACC TCCAACGTCCGAGAGCGAGCATTGGTGTGCAACATTTGATGAAATCGTGAAGCGCTTCAGGCTACCCGGAGGCCAAGATCAAGGTAGCTATTGATTACCTCGCTGACATTGGGCACATATACTCAAC ATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACCATCGAGATGCTTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACGAGTAGCACATATCGAGTGAC AAACATATAATATATGTATGTTTGTTGTTTTGCAGCATCAGCATTAaaaaaaaaa                                                                                                                  ]


>consensus_10813#0 TCCTGGGCTTTTTAGTCTACTCGATCTAACTCCAAATCCCATCAACCCCGCCGCCGCCGC CGCCGCCGCCACCACCGCGAGACGCGAGAGGAGAGTGAAAGAAAGATTCAGAGAGAGAGA GAGAGTAAGCATGATGTCCTTCAGCCAGCCCGACGCCTTCTCGCCGTCGCAGTTCACCTC CTCCCAGAATGCCGCCGCCGACTCTACCACCCCTTCCAAGAGCCGGGGCGCATCGAGCAC CATGCCGCTCACCGTGAAGCAGATCTCTGAAGCGCAGCAATCTGGCATCACCGGGGAGAA GGGCGCTCCCTTCGTCGTCGACGGCGTCGAGACAGCCAACGTTAGGCTTGTGGGATTGGT CAGTGGCAAGACGGAGCGGAACACCGATGTGTCCTTCACGATCGACGATGGCACCGGCCG CCTCGATTTCATCAGATGGGTCAATGATGGTGCTGATTCTGCTGAAACCGCTGCTGTTCA GAATGGAATGTATGTTTCTGTCATTGGTAGCCTCAAGGGGCTTCAGGAGAGGAAGCGTGC TACTGCTTTCGCTATCAGGCCTGTAACTGATTATAATGAGGTCACACTGCATTTCATTCA GTGCGTGCGAATGCATTTAGAGAACACCAAATCACAGATTGGTAGCCCTGCAAAAACATA TTCTGCCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGT GAAATCCAACCCGGCACCAGTGCTCAGTGTAACAAATGGATCAAAAACTGATTTGAACAC AGAAGTGCTGAATGTTTTCCGCGAACCAGCAAACGTCGAGAGCGAGCATGGTGTGCACAT TGATGAAATCGTGAAGCGCTTCAGGCTACCGGAGGCCAAGATCAAGGTAGCTATTGATTA CCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTT CAATGAATAAAGGGGATTGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAA GCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGCTTCATGTTTGCTTGTCATACTAA CCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTACATGTAACCGTATCTGTATTACG AGTAGCACATATCGAGTGACAAAACATATAATATATGTATGTTTGTTGTTTTGCAGCATC AGCATTATTTGGACTGTAACATGCTTGATTGATCTCTTTGGATGCAGTTAATTTCATTGT GATATTAACTCACGCATCATCGATCGATCGTGTGTTTTTTGGTAGCTAGATGGTCCAATC ACAATAATCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)