|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 891 fasta sequence
[TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA-TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT-GCATCCGGTCGCGCTAGTTTCAAGG-CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT-GCAATTT-GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT-TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT-CCATCTT-TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT-CTTATTAC-GGCCA-CAAATCACAA-GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA]
[-] EMBL AU057037 [TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTCTAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAA TTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACTGGCATCCGGTCGCGCTAGTTTCAAGGCCATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGGCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAG ]
[-] EMBL CF303062 [ TCATGTACAAGCAAAATATTGAGGAAAACCAAATTTGGATCATGACCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTAT AATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGC ]
[+] EMBL CB650787 [ CCTTTTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT CTTATTAC GGCCA CAAATCACAA GTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA]
[-] EMBL BQ909059 [ tttTTTTTTTATCATGGAGAAAATTGCCGGATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAATGTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAA CCTTAA CTGAACTGGAACTTTCCAATTGATTGACTGGAATCCGGTAGTCAGCTTCCTTATTACGGGGCACCAATTCACAAGGTATTTGACCCGGGGGgttt ]
[-] EMBL BI812498 [ TTTTTTTTTTGGGAGAAAATTTCCAAATCAATTGATATTTATGAATTCTCACAGATAAACTAGTTACTAATG CG ACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATA TGGGGTACAAAACA TTTTG CTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT G ATCCGGTCGCGCTAGTTTCAAGG GATTTTGAGACATCA TTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGG TACAATCTTT GCAATTTGGTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGGCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGG CACGAATCATGGGCTCTG AAT TGTACCAGG CCCGCTTTGGTAATTATACAGTCACAAGCA CCATGGATTCTTCCCATCTTGTGTGACGAAA ]
[-] EMBL AU057036 [ TAACTAAACTCGCTAAGGATGGTAGGAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTT GCAATTT GTTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT CCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTT C ]
[+] EMBL CA305874 [ AACTCATGCAGATCGTGGACAATTTTAAACACT GCATCCGGTCGCGCTAGTTTCAAGG CATTTTGAGACATCATTTTGAGCTCGTCTGACCTAGGGTCAAACCAATCGGCTACAATCTTT GCAATTT GNTCTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTTCCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAAT TGTACCAGGCCCTGCCTTTGTAATTATACAGTCACAAGCACCCATGCATTCTT GCATCTT TGTAACGAAACCCTTAACCTGAACTGGAACTTTNCAATTGATTGACTGCAATCGGCTAGTCAGCTT NTTATTAC GGCCA CAAATC ]
consensusID : consensus_10816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG]
[+] EMBL CB650786 [CGCACTCGAATGTGACGCGCTCCACCGCGCCACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCGCCTCGTCGCTGGCCGCCGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTCGCTCCCGTCCCCGCTCCTCCCGGCCTCCCCTCCCCTCCCCGCGGCCCCCGCCCCCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGCGCGGTCGCCGTCTCCGTATCCGTCTCGGCCTACGGCGCGGGCTCCACCGCCGCGGCGTCGCGGCTCCACCGGATGTGGGCCGAGTTCTCCCGCTTCGTGCGGCTGCACGGGAACCAAATCGCGCCGCTCGGGTTCGCGTCCCTCGGCCTGGGCGTTGGAGGCGGCGGCGGTGGGAGCGGCGAAGGGGCCGGCGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGACGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCTAGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGACTTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTCCCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAGTTCATCCTCTGGTCCAATAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10816#0 TTTTTTTTTTTTTTTGAAATTCAATTGTTCTTTTTTCTTTCATACAGTTCCTAAACTGTC 60
consensus_10816#1 ------------------------------------------------------------
consensus_10816#0 TAGTCCCAACAGTCATGTACAAGCAAAATATTGAGGAAAACCAAATTGGATCATGACCTT 120
consensus_10816#1 -----------------------------------------CGCACTCGAATGTGACGCG 19
* * * ** ****
consensus_10816#0 TTTCTATCATGGAGAAAATTTCCAAATCAACTGATATTTATGA-ATTCT--CACAGATAA 177
consensus_10816#1 CTCC-ACCGCGCC-ACCGCCTCCGCCGCCGCCGACGACGACGTCATGCCGGCGCCGACCG 77
* * * * * * *** * * ** * * ** * * * **
consensus_10816#0 ACTAGTTACTAATGCCGCACAAAAAATAATAGAATTAACTAAACTCGCTAAGGATGGTAG 237
consensus_10816#1 CCTCGTCGCTG--GCCGC------CGCGGCGGACCCTGCGCTCCCCGCCGCGTTCCTCTC 129
** ** ** ***** ** * * *** *
consensus_10816#0 GAGTTTATGATGCACACGCATATTGGGGTACAAAACATTTTTGCCTGACTAACTCATGCA 297
consensus_10816#1 G---CTCCCGTCCCCGCTCCTCCCGGCCTCC----CCTCCCCTCCCCGCGGCCCCCGCCC 182
* * * * * * * * ** * * * * ** * * * *
consensus_10816#0 GATCGTGGACAATTTTAAACACTGCATCCGGTCGCGCTAGTTTCAAGGCATTTTGAGACA 357
consensus_10816#1 CCTCCTCCAACGCCTTCTGCGTCCCCCGCGGCCCCGCCCGC------GCGGTCGCCGTCT 236
** * * ** * * *** * *** * ** * * *
consensus_10816#0 TCATTTTGAGCTCGTCTGACCTAGGGCCAAACCAATCGGCTACAATCTTTGCAATTTGTT 417
consensus_10816#1 CCGTATCCGTCTCGGCCTAC---GGCGCGGGCTCCACCGCCGCGG-CGTCGCGGCTC-CA 291
* * * **** * ** ** * * * ** * * * ** *
consensus_10816#0 CTGGAGATTTTGAGAACTTCCCACATCCATTATCAACAACATATGGAACATTGCCAGCTT 477
consensus_10816#1 CCGGATGTGGGCCGAGTTCTCCCGCTTCGTG--CGGCTGCACGGGAACCAAATCGCGCCG 349
* *** * ** * ** * * * * * ** * * ** * **
consensus_10816#0 CCTGACCAGCAATATATCCATTTAGTATAATGGGCAGGCCACGAATCATGGCCTCTGCAA 537
consensus_10816#1 CTCGGGTTCGCGTCCCTCGGCCTGG-GCGTTGG--AGGCGGCGG-CGGTGGGAGCGGCGA 405
* * * ** * * *** **** ** *** * ** *
consensus_10816#0 TTGTACCAGGCCCCGCCTTTGTAATTATACAGTCACAAGCACCCATGCATT--CTTCCAT 595
consensus_10816#1 AGGGGCCGG---CGGGGGAGGCGGGGGCGGAGGTGGGGAGGTGGATGGGTTGGCTGACGA 462
* ** * * * * ** *** ** ** *
consensus_10816#0 CTTTGTAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 655
consensus_10816#1 CGTTGGAACGAAACCCTTAACCTGAACTGGAACTTTCCAATTGATTGACTGCAATCGGCT 522
* *** ******************************************************
consensus_10816#0 AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 715
consensus_10816#1 AGTCAGCTTCTTATTACGGCCACAAATCACAAGTATTTGACCAGTGGGTTCACCAAGGAC 582
************************************************************
consensus_10816#0 TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCCTCGTGCGGACCCATCCCTTC 775
consensus_10816#1 TTCGTCATATAGAGCATCACCAAGTGCTCTAGCAGTGGCTTCAATAGGACCCATCCCTTC 642
*************************************** ** **************
consensus_10816#0 CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 835
consensus_10816#1 CCCCCCACCCATTAGTAGAACAGCAGGCAAATATTCATCCATACCTAACTCCCTTCGCAG 702
************************************************************
consensus_10816#0 TTCATCCTCTGGTCGAATAGGTTTGACAAAAGATGGACGTACTGGGAGGCCATAGA 891
consensus_10816#1 TTCATCCTCTGGTCCAATAGG----------------------------------- 723
************** ******
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||