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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1069 fasta sequence
[AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGATGAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAATGTTCCTGACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCCAAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCCTCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCCGAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGCGTGCTTCTTATAATAAAGCATACATACATACATACATACATACATACATACATATATATATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT]
[+] EMBL AK105945 [AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGATGAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAATGTTCCTGACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCCAAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCCTCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCCGAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGCGTGCTTCTTATAATAAAGCATACATACATACATACATACATACATACATACATATATATATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT]
consensusID : consensus_10818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1057 fasta sequence
[AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG-CATGTATCCCTGTGTGTCACTAAAAAAAAA]
[+] EMBL AK105956 [AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTATCCCT ]
[+] EMBL CF308471 [ CTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAGCCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGC ]
[+] EMBL CF281451 [ CACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACTCTTGTTTTAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAA ]
[+] EMBL AU077703 [ GACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCANAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGA NCGGAACCTACACCACA ]
[+] EMBL AU077704 [ CCGAAACCT CACCACAGCCTGACCCAANACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTATCCCTGTGTGTCACTAAAAAAAAA]
[-] EMBL CF308472 [ GATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCTTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGAAAGAGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAGCCATGTATCCCTGTGTGTCACTAAAAAAAA ]
[-] EMBL CF281450 [ GCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTAaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10818#0 AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGAT 60
consensus_10818#1 AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGAT 60
* *************** *** *********************** **************
consensus_10818#0 GAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAA 120
consensus_10818#1 GAG---ATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAA 117
*** *********************************** ************ *****
consensus_10818#0 TGTTCCTGA---CATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGC 177
consensus_10818#1 TGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGC 177
********* ************************************************
consensus_10818#0 AGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCC 237
consensus_10818#1 AGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCC 237
********* **************************************************
consensus_10818#0 ACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCC 297
consensus_10818#1 ACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCC 297
********************************************************* **
consensus_10818#0 AAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCC 357
consensus_10818#1 AAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCC 357
************************************* ************* ********
consensus_10818#0 AAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCC 417
consensus_10818#1 AAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCC 417
***** *** ************** ****************** ****************
consensus_10818#0 TCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCC 477
consensus_10818#1 TCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCC 477
*********************************** ************************
consensus_10818#0 TCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCC 537
consensus_10818#1 TCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCC 537
******************* **** **************** ******************
consensus_10818#0 TCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCC 597
consensus_10818#1 TCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCC 597
************ ***********************************************
consensus_10818#0 ACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCC 657
consensus_10818#1 ACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCC 657
*************************************** ********************
consensus_10818#0 GAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCC 717
consensus_10818#1 AAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCC 717
***************************** *****************************
consensus_10818#0 AGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAAT 777
consensus_10818#1 AGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAAT 777
************************ **** ******* ***** **************
consensus_10818#0 AGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCAT 837
consensus_10818#1 AGCTATAATTGTGCCCGGGAACTGAGTAGACTT-----TTTGCTACGTATGATTCCGCAT 832
********************************* *************** ******
consensus_10818#0 ACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACT 897
consensus_10818#1 AGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACT 892
* ******************************* * ******* ****************
consensus_10818#0 AGTGT----GTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGC 953
consensus_10818#1 GGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGC 952
**** ********************************* ******* *********
consensus_10818#0 GTGCTTCTTATAATAAAGCATACATACATACATACAT-ACATACATACATACATATATAT 1012
consensus_10818#1 GTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATAC 1012
********************** *** ** * * * ** * * **********
consensus_10818#0 -ATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT 1069
consensus_10818#1 CATGAATAAAAAGAGCATGTATCCCTGTGTGTCACTAAAAAAAAA------------- 1057
** * * * * * * * ** ** *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||