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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1129 fasta sequence
[ATCCTCGACACCACCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCACCCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCCTTCCCTCGACGCCTCCTCCCTCTCCCACTCCGACCTCCTCCTCCACGCCATCCCCGCCGATGC-GCCCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACCGCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGC-TGAGAAGTACGAAGTGAAGAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAA-TGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGAAGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATCGGGAGGAATACAAGGAG-CTTGTT-GAGAAGGACCCAAGGCTTGTTGT-GGAGA-TATATGAA-GCCTATC-TGAAC-AGA-CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGATCTATTGCCATCTTTATGTAACATATAGGTCAACTGATATGTGATGATCATCAAACACACTCAGTATGAACAAAAAACTAAGTGTAAACTATTTGCAACGTTGAACGGTTAAATTGATTACC]
[+] EMBL AK068718 [ATCCTCGACACCACCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCACCCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCCTTCCCTCGACGCCTCCTCCCTCTCCCACTCCGACCTCCTCCTCCACGCCATCCCCGCCGATGCATCCCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACCGCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGC TGAGAAGTACGAAGTGAAGAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAA TGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGAAGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATCGGGAGGAATACAAGGAG CTTGTT GAGAAGGACCCAAGGCTTGTTGT GGAGA TATATGAA GCCTATC TGAAC AGA CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGATCTATTGCC ]
[+] EMBL AK069407 [ TCGACACCACCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCACCCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCCTTCCCTCGACGCCTCCTCCCTCTCCCACTCCGACCTCCTCCTCCACGCCATCCCCGCCGATGC GCCCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACCGCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGC TGAGAAGTACGAAGTGAAGAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAA TGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGAAGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATCGGGAGGAATACAAGGAG CTTGTT GAGAAGGACCCAAGGCTTGTTGT GGAGA TATATGAA GCCTATC TGAAC AGA CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGATCTATTGCCATCTTTATGTAACATATAGGTCAACTGATATGTGATGATCATCAAACACACTCAGTATGAACAAAAAACTAAGTGTAAACTATTTGCAACGTTGAACGGTTAAATTGATTACC]
[+] EMBL AK106061 [ CGACACCACCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCACCCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCCTTCCCTCGACGCCTCCTCCCTCTCCCACTCCGACCTCCTCCTCCACGCCATCCCCGCCGATGC GCCCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACCGCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGC TGAGAAGTACGAAGTGAAGAACTTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAA TGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGAAGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATCGGGAGGAATACAAGGAG CTTGTT GAGAAGGACCCAAGGCTTGTTGT GGAGA TATATGAA GCCTATC TGAAC AGA CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGATCTATTGCCATCTTTATGTAACATATAGGTCAACTGATATGTGATGATCATCAAACACACTCAGTATGAACAAAAAACTAAGTGTAAACTATTTGCAACGTTGAACGGTTAA ]
[+] EMBL BE040561 [ CACCATCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCACCCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCCTTCCCTCGACGCCTCCTCCCTCTCCCACTCCGACCTCCTCCTCCACGCCATCCCCGCCGATGC GCCCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACCGCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGATGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGCTTGA AAGTACGAAGTGAATAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAATTGCC TCACACATTATGCGTTTGCGCATTGTCACATCGCG AGCAGTTGCTCGAGACATTCCTGGCAGCTATCATGGACACCATGTTAACGCTTGCGAATTGGGAGGAATACAAGAAGTTTTGTTAGA AAGGACCCAAGGGTTGTTGTGGGAGATTATATTAAGGCCTATCTTGAACAAGACCAAGTGAACACTtgtgg ]
[+] EMBL AU030339 [ GCCCACCGCGTCATCCTCGCCAGCCGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAGAGAGCCGGNGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCGTCCATTACATGTACACAGCNGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGGTGTTGGC TGAGANGTACGANGTGAAGAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAA TGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGAAGCNGCTGCTCGAGACATCCCTGGCNGCGATCATGGACAACATGTCAACGCTGGCNGATCGGGNGGCATACAAGGAG CTTGTT GAGAAGGACCCAAGGCTTGTTGT GGAGA TATATGAA GCCTATC TGAAC AGA CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTNCTGATAAAAaaaaaaa ]
[+] EMBL AU091398 [ GGCAGATCGGGAGGAATACAAGGAG CTTGTT GAGAAGGACCCAAGGCTTGTTGT GGAGA TATATGAA GCCTATC TGAAC AGA CAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTG ]
consensusID : consensus_10827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[CGGTCAACGCTGGCANATCCGGGAGGAATACAAGGAGCTTNTTGAGAAGGCCCCAAGGCTTGTTGTGGAGATATNTGAAGCCTATCTGAACAGACAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGANTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029978 [CGGTCAACGCTGGCANATCCGGGAGGAATACAAGGAGCTTNTTGAGAAGGCCCCAAGGCTTGTTGTGGAGATATNTGAAGCCTATCTGAACAGACAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGANTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[CCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACNTCGCCGTCGCACCCAGCGGCGGCGCCGCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCTTTCCCTCGACGCTTCTTCCTNTTCCATNACGACTNCTTCTTCAAGCAATCCCGGCGANTNTCNGCCGAACCGAAAANACGGCGTTNCCGGCAAAGGTAATA]
[+] EMBL AU030338 [CCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACNTCGCCGTCGCACCCAGCGGCGGCGCCGCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTCGTGCAAGGAGGAGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCCGCTCCCGCCTCCACTTCCTCCGCCTCCCTTCCCTTTCCCTCGACGCTTCTTCCTNTTCCATNACGACTNCTTCTTCAAGCAATCCCGGCGANTNTCNGCCGAACCGAAAANACGGCGTTNCCGGCAAAGGTAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10827#0 ATCCTCGACACCACCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACCTCGCCGTCGCAC 60
consensus_10827#2 -------------CCGTCTCCGCTTCCCTTTCCATTCGCGCCGCCACNTCGCCGTCGCAC 47
consensus_10827#1 -------------CGGTCAACGCTGGCANATCCGGGAGGAATACAA-------GGAGCTT 40
* *** **** * *** * * * * **
consensus_10827#0 CCAGCGGCGGCGCCGCCGTGCCGGAGGAGCGGCGATGTGGTGCCAGTC-GTGCAAGGAGG 119
consensus_10827#2 CCAGCGGCGGCGCCGC-GTGCCGGAGGAGCGGCGATGTGGTGCCAGTC-GTGCAAGGAGG 105
consensus_10827#1 NTTGAGAAGGCCCCA--AGGCTTGTTGTGGAGATATNTGAAGCCTATCTGAACAGACAAG 98
* * *** ** ** * * * * ** ** *** ** * ** * *
consensus_10827#0 AGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGG 179
consensus_10827#2 AGTACGAGGAGGAGGACGCCGGGACGTGCAAGGAGTGCTACGAGGAGGCGAGCGAGACGG 165
consensus_10827#1 TGAACACTGCTGCTGGGAAGGAGACAGATTCC-AGTAGTAGGAAGGGGTAATTCAAAAGA 157
* ** * * * * *** *** ** ** * ** * * * *
consensus_10827#0 AGGAGGAGCTCAAGCGCGAGATCGACGACCT--CC--GCTCCCGCCTCCACTTCCTCCGC 235
consensus_10827#2 AGGAGGAGCTCAAGCGCGAGATCGACGACCT--CC--GCTCCCGCCTCCACTTCCTCCGC 221
consensus_10827#1 AAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTTGCATGTTCATGCTAGGC 217
* * *** * ** * * ** ** *** ** * * * ** **
consensus_10827#0 CTCCCTT--CCCCTTCCCTCGACGCCTCCTCCCTCT---CCCACTCCGACCTCCTCCTCC 290
consensus_10827#2 CTCCCTT--CCCTTTCCCTCGACGCTTCTTCC-TNT---TCCATNACGAC-TNCTTCTTC 274
consensus_10827#1 AAAGANTGGCACATCAAATTGTCA-TCCTGCGGTGTAGGCGCAGAACAGC-TATTTCTGT 275
* * * * * * * * * * * ** * * * * **
consensus_10827#0 ACGCCATCCCCGCCGATGCGC---CCGCCCGCCCCGACACCCCCGCCGTCCCCGCCCACC 347
consensus_10827#2 AAGCAATCCCGGCGANTNT------CNGCCGAACCGA-AAANACGGCGTTNCCGGCAAAG 327
consensus_10827#1 ATATGCTTGAATTGATACTGTGTGCTCGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335
* * * * * *
consensus_10827#0 GCGTCATCCTCGCCAGCAGATCTCCTGTTTTCAGAGCTATGCTTGAGAACGAGATGGAAG 407
consensus_10827#2 GTAATA------------------------------------------------------ 333
consensus_10827#1 AAAAAAAAAAAAA----------------------------------------------- 348
*
consensus_10827#0 AGAGCCGGAGTGGCATCATCAAAATATACGATGTGTCCTACGACGTCCTTCGTGCTTTCG 467
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 TCCATTACATGTACACAGCAGAAGCTCTCCTTGACGAGCAGATGGCATCTGATCTCCTGG 527
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 TGTTGGCTGAGAAGTACGAAGTGAAGAACCTGAAGGCCTACTGTGAGAAATTCTTAACAT 587
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 CCAAAGTGAGCAACGACAATGCCATCACGCATTATGCGTTTGCGCATCGCCACAGCGCGA 647
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 AGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATC 707
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 GGGAGGAATACAAGGAGCTTGTTGAGAAGGACCCAAGGCTTGTTGTGGAGATATATGAAG 767
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 CCTATCTGAACAGACAAGTGAACACTGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGA 827
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 AGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGTTCTAACCAAGCTTTT 887
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 GCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAG 947
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 AACAGCTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGA 1007
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 TCTATTGCCATCTTTATGTAACATATAGGTCAACTGATATGTGATGATCATCAAACACAC 1067
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 TCAGTATGAACAAAAAACTAAGTGTAAACTATTTGCAACGTTGAACGGTTAAATTGATTA 1127
consensus_10827#2 ------------------------------------------------------------
consensus_10827#1 ------------------------------------------------------------
consensus_10827#0 CC 1129
consensus_10827#2 --
consensus_10827#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||