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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1246 fasta sequence
[CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCATGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGGGGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATATTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAGATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGGATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGACTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA-TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTGGCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA]
[+] EMBL AK059584 [CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCATGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGGGGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATATTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAGATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGGATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGACTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACA ]
[-] EMBL CB619993 [ ATCC TTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTGATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTcc ]
[+] EMBL OSS0954A [ AACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGNGTTAGCACTGNCACTNGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCNCCAAGGTGTATA ]
[-] EMBL CB620032 [ CGTTCCTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAGGTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATTTTTACGGAATCTGTGAAAGTGGAAGA ]
[-] EMBL CB677172 [ CTTCTATTCATGATCACCAACAAAGTATAGTATGGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAAGGTGCAAAGGTATAG ]
[-] EMBL CB670030 [ GTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGA TTAAACCTATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTGGCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA]
[+] EMBL AU174178 [ GAGTGGGTACAGAAGAGATTTAAACCTATTAGGCNAGGAGATNCGGATGNCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCATGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAATCTGTGAAAaa ]
consensusID : consensus_10833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACCTATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCATGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAAAAAAAAAAAA]
[-] EMBL CA761791 [GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGTCAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGGTAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCTCCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACCTATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTGCCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCATGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTTTGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGATCCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTAGAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGGAAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAATCTGTGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10833#0 CAAAATTTGGGTCTTGCCAGGAGGTTCAGAAACTTCGTGTGTACAAAAACAGGCATCTCA 60
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 TGATTCAGACATCTCAGCAAATTGGTGATGCGCCATATGGGGACCATTTTACTGTTGAGG 120
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 GGATCTGGGATGTTGAACAAGACAGCCTGGATGAAAGCAGTTGCTACCTCAGGGTATATA 180
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 TTAATGTAGCCTTCTCAAAGAAAACCATATTTAGAGGGAAGATTGATCAATCAACAAAAG 240
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 ATGAATGCCGTGATGTTTTTGGGCTATGGGTCAAGCTCGGTCATGATCTTTTGAAGCAGG 300
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 ATAGCAGCTGTCATTCGAGAGGACCTTCCAGCTCAACTAATGTTGATGATCCATCAGGGA 360
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 CTACTCTCAGTAGTGAGAATCCTTTGGAAAACACAGATCCAGGCTCGAGTTCTGCACCTG 420
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 ATGAACCTGTTGTGAGAAGCATCGTTCCTTCTATTCATGATCACCAACAAAGTATAGTAT 480
consensus_10833#1 ------------------------------------------------------------
consensus_10833#0 GGGATTCCATAATATCCACATCACAAGAACTTTGGCGTTCACTCTTGTCATATATACAGT 540
consensus_10833#1 -GGATTCCATAATATCCACATCACAAGAACTTGGCGNTTCACTCTTGTCATATATACAGT 59
******************************* * ***********************
consensus_10833#0 CAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGG 600
consensus_10833#1 CAAGTCAGCTCGGGCCGGTGTTAGCACTGACACTGGTAGCCATCATCGTTCTATTGCAGG 119
************************************************************
consensus_10833#0 TAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCT 660
consensus_10833#1 TAACCATCATAGTTCTACTACTCAGATCCCCCAAGGTGTATATGGTTAACCAAGAGACCT 179
************************************************************
consensus_10833#0 CCCCAAGCGGCTTCTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACC 720
consensus_10833#1 CCCCAAGCGGCTTTTCCTATAGCAAAGAGAGCATAGAGTGGGTACAGAAGAGATTAAACC 239
************* **********************************************
consensus_10833#0 TATTAGGCGAGGAGATGCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTG 780
consensus_10833#1 TATTAGGCGAGGAGATTCGGATGGCGGAGAGTCACCTGGAGATGATGCAACATGAGTTTG 299
**************** *******************************************
consensus_10833#0 CCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCATGAGTCA 840
consensus_10833#1 CCTGGCTCAAGTCTCATCTGGAAAGGCTGCAGAGACTGAGGAGCAGCAGCTCCTGAGTCA 359
**************************************************** *******
consensus_10833#0 TGGACCCGGCAAATAGTGAGTACTTTACACAAAGCTGAGGGCAAAGTACGTACCTTAGTT 900
consensus_10833#1 TGGACCCGGCAAATAGTGAGTACTTTACCCAAAGCTGAGGGCAAAGTACGTACCTTAGTT 419
**************************** *******************************
consensus_10833#0 TGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGAT 960
consensus_10833#1 TGGTTATTTCTTGTTGTTCGTTGTATTTAATAGTACAGTGATATTGCAAGCAATATCGAT 479
************************************************************
consensus_10833#0 CCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTACGATACAGTGATAGACTGGTA 1020
consensus_10833#1 CCTGTGGGTGTGGATATGTTACGATCGAGGGCACACGTTCGATACAGTGATAGACTGGTA 539
************************************** *********************
consensus_10833#0 GAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGG 1080
consensus_10833#1 GAGTGCACCATCATGGTGGTGTAGTAAGTAAATACATGATGAAACTACAGAACGTTGTGG 599
************************************************************
consensus_10833#0 AAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGGTATAGATTCAGAA 1140
consensus_10833#1 AAAAATGTCCACTTGCAACGACAATGTATGCGGTAAACTTGCAAAGTTATAGATTCAGAA 659
********************************************** *************
consensus_10833#0 TCTGTGAAAGTGGAAGATGTACATTTTACCTATCCTAGGACATTTGACCGGTAATCATTG 1200
consensus_10833#1 TCTGTGAAAAAAAAAAAAAA---------------------------------------- 679
********* ** *
consensus_10833#0 GCTTTCTACCTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGA 1246
consensus_10833#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||