cluster # 10834

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Oryza sativa
cluster # 10834 cluster # 10834 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10834#0 length = 928 sequences # 6

consensus_10834#1 length = 326 sequences # 1
consensus_10834#2 length = 179 sequences # 1

consensusID : consensus_10834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 928
fasta sequence

                              [CTTATCTCTATCGCTTTACTCTCTCTGTCCCTGGCTTTCTTCGTCTCTCTTCATGTCGCCGGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAGCCCCCTCCCTCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTTCGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGGTTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGCTCCTCTACTGCTCC-TCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCGACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGCCTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGGCCGTCAGATTTAGCCGCATCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAGGTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCTCGGTGGCTTGGCCGGTGGATCCATCGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTGTTGATGTTTATTCATGC-TTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGCATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGGCTCAATTCGAGCCNGTCAAAAATT]

[+] EMBL AK059899             [CTTATCTCTATCGCTTTACTCTCTCTGTCCCTGGCTTTCTTCGTCTCTCTTCATGTCGCCGGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAGCCCCCTCCCTCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTTCGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGGTTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGCTCCTCTACTGCTCC TCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCGACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGCCTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGGCCGTCAGATTTAGCCGCATCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAGGTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCTCGGTGGCTTGGCCGGTGGATCCATCGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTGTTGATGTTTATTCATGCTTTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGCATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGGCTCAATT                 ]
[+] EMBL OSS1285A             [                                       TTCGTCTCTCTTCATGTCGCCGGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAG CCCCTCCCTCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTTCGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGGTTGGAGCAGCCTCGCCCCTCCTCGTCTGGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK070802             [                                                        CGCCGGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAGCCCCCTCCCTCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTTCGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGGTTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGCTCCTCTACTGCTCC TCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCGACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGCCTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGGCCGTCAGATTTAGCCGCATCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAGGTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCTCGGTGGCTTGGCCGGTGGATCCATCGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTGTTGATGTTTATTCATGC TTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGCATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGGCTCAATTCGAGCCAGTCAAggttt]
[+] EMBL CB627386             [                                                                CATATCCACCACTTGATCCAACCCTCCCCAACCGTGGCGAAGCCCCCTCCCTCTACCCCGGCGCCCCTCCCTCCGGGCTCCGGCATCCTCCTGCCTGTGCCGCTCGGCCCGTGCTTCGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGGTTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGCTCCTCTACTGCTCCATCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCGACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGCCTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGCCCGTCAGATTTAGCCGCCTCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAGGTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCCCGGTGGCTTGGCCGGTGGATCCATCGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCCTCCCGTTCTTCCTCCCACACC   AGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTGTTGATGTTTATTCATGC  TTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGCATTGTATTGGGGGATTGGGGCATTGANGAGTCAATGAAGAGA                                           ]
[+] EMBL AU076271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGCGGATCTGGGAGATGCGATGNTGACGCCACCCCGTCCCNTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTGTTGATGTTTATTCATGC TTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGCATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGGCTCAATTCGAGCCNGTCAAAAA  ]
[+] EMBL AU095743             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTGGGNGATGCGATGGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGAGCNGTGATGATAATGAATCACTCTTGTGCTTTGTTGATGTTTATTCATGC TTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGGGGNATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGGCTCAATTCGAGCCNGTCAAAAA  ]




>consensus_10834#0
CTTATCTCTATCGCTTTACTCTCTCTGTCCCTGGCTTTCTTCGTCTCTCTTCATGTCGCC
GGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAGCCCCCTCCCTCTAC
CCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTT
CGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGG
TTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGC
TCCTCTACTGCTCCTCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCG
ACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGC
CTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGGCC
GTCAGATTTAGCCGCATCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAG
GTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCTCGGTGGCTTGGCCGGTGGATCCAT
CGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCGTCCC
GTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTG
TTGATGTTTATTCATGCTTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAAA
ATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTGG
GGCATTGTATTGGGGGATTGGGGCATTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAA
ATGGCTCAATTCGAGCCNGTCAAAAATT

consensusID : consensus_10834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GCTTGCCGTGGATCCATCGGTGTGGAGTCGGAAACAGCGGATCTGGGAAATCGATGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGACAGTGATGATAATGAATTACTCTTGTGCTTTGGTTGATGTTTATTCATGCTTTTTTTTCTAATCTNGAGGATCTGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTTGTTAATATTTTCACCGNCAATGAGGATCTGGGCCATTTATTGGGGGATTGGGCCATTTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGNCTCCATTCGAAAAA]

[+] EMBL BI806586             [GCTTGCCGTGGATCCATCGGTGTGGAGTCGGAAACAGCGGATCTGGGAAATCGATGTGACGCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGACAGTGATGATAATGAATTACTCTTGTGCTTTGGTTGATGTTTATTCATGCTTTTTTTTCTAATCTNGAGGATCTGGTTGTTCATATGTTAAAATAAGGATATGGGGATTATTGTTTTGTTAATATTTTCACCGNCAATGAGGATCTGGGCCATTTATTGGGGGATTGGGCCATTTGAGGAGTCAATGAAGAGAATCGGGCTCAATAAAATGNCTCCATTCGAAAAA]




>consensus_10834#1
GCTTGCCGTGGATCCATCGGTGTGGAGTCGGAAACAGCGGATCTGGGAAATCGATGTGAC
GCCACCCCGTCCCGTTCTTCCTCCCACACCAGAAGAAGGACAGTGATGATAATGAATTAC
TCTTGTGCTTTGGTTGATGTTTATTCATGCTTTTTTTTCTAATCTNGAGGATCTGGTTGT
TCATATGTTAAAATAAGGATATGGGGATTATTGTTTTGTTAATATTTTCACCGNCAATGA
GGATCTGGGCCATTTATTGGGGGATTGGGCCATTTGAGGAGTCAATGAAGAGAATCGGGC
TCAATAAAATGNCTCCATTCGAAAAA

consensusID : consensus_10834#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [TAGATCTNTATCGNTTTANTCTCTCTGTCCCNGGNTTTTTTCGTNTCNTTTCATGTNGCCGGCACATATCCACCACCGGCTCCAACCCNCCCCAACCGTGGCGGAGCCCCTCCCNCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCNGCTCGGCCNGTGCTT]

[+] EMBL OSS10656A            [TAGATCTNTATCGNTTTANTCTCTCTGTCCCNGGNTTTTTTCGTNTCNTTTCATGTNGCCGGCACATATCCACCACCGGCTCCAACCCNCCCCAACCGTGGCGGAGCCCCTCCCNCTACCCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCNGCTCGGCCNGTGCTT]




>consensus_10834#2
TAGATCTNTATCGNTTTANTCTCTCTGTCCCNGGNTTTTTTCGTNTCNTTTCATGTNGCC
GGCACATATCCACCACCGGCTCCAACCCNCCCCAACCGTGGCGGAGCCCCTCCCNCTACC
CCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCNGCTCGGCCNGTGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10834#0      CTTATCTCTATCGCTTTACTCTCTCTGTCCCTGGCTTTCTTCGTCTCTCTTCATGTCGCC 60
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      GGCACATATCCACCACCGGCTCCAACCCTCCCCAACCGTGGCGGAGCCCCCTCCCTCTAC 120
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      CCCGGCGCCCGTCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCCGCTCGGCCCGTGCTT 180
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      CGTCGCACCGCTGCCAGGGCTCTCCTCCTCCTGCTCAGAGGCAGTTCGGTGACGAGCGGG 240
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      TTGGAGCAGCCTCGCCCCTCCTCGTCTGGATCCAGCCGCAGGCATGGCCACATCGCCGGC 300
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      TCCTCTACTGCTCCTCTCCTCCATCTCCCTGCGCTCACCGTTCCTGATGAGGGCACGGCG 360
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      ACTCGAGGCGACGGCTGCGGCGACTCGGTCTTCCAGACTCGTCCCGCCACCGGCTACGGC 420
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      CTCAACGGGCGATGACGGGCGACCTAGCCGACGGATCCATCGGCGTGGAGGTCTGGGGCC 480
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      GTCAGATTTAGCCGCATCCGACCTCCATGGTGACGGGCTGACGGCGACAGCGGGTTGCAG 540
consensus_10834#1      ------------------------------------------------------------
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      GTGCGACAAATGCCCCTCCTCTCCTCTACTTTCCCTCGGTGGCTTGGCCGGTGGATCCAT 600
consensus_10834#1      -----------------------------------------GCTTGCC--GTGGATCCAT 17
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      CGGTGTGGAGGTCGGAGACAGGCGGATCTGGGAGATGCGATGGTGACGCCACCCCGTCCC 660
consensus_10834#1      CGGTGTGGAG-TCGGAAACAG-CGGATCTGGGAAAT-CGATG-TGACGCCACCCCGTCCC 73
consensus_10834#2      ------------------------------------------------------------
                                                                                   

consensus_10834#0      GTTCTTCCTCCCACACCAGAAGAAGGAGCAGTGATGATAATGAATTACTCTTGTGCTTTG 720
consensus_10834#1      GTTCTTCCTCCCACACCAGAAGAAGGA-CAGTGATGATAATGAATTACTCTTGTGCTTTG 132
consensus_10834#2      ----------------------------------------TAGAT--CTNTATCGNTTTA 18
                                                               *  **  ** *   * *** 

consensus_10834#0      -TTGATGTTTATTCATGCTTTTTTTTCTAATCTTGAGGATCTGGGTTGTTCATATGTTAA 779
consensus_10834#1      GTTGATGTTTATTCATGCTTTTTTTTCTAATCTNGAGGATCTGG-TTGTTCATATGTTAA 191
consensus_10834#2      NTCTCTCTGTCCCNGGNTTTTTTCGTNTCNTTTCATGTNGCCGG------CACATATCCA 72
                        *   * * *        *****  * *  * *   *   * **      ** ** *  *

consensus_10834#0      AATAAGGATATGGGGATTATTGTTTGTTGTTAATATTTTCACCTTCAATTTGAGGATCTG 839
consensus_10834#1      AATAAGGATATGGGGATTATTGTTT--TGTTAATATTTTCACCGNCAA--TGAGGATCTG 247
consensus_10834#2      CCACCGGCTCCAACCCNCCCCAACCG-TGGCGGAGCCCCTCCCNCTACC-CCGGCGCCCG 130
                            ** *                  **            **   *      *   * *

consensus_10834#0      GGGCATTGTATTGGGGGATTGGGGCATT-GAGGAGTCAATGAAGAGAATCGGGCTCAATA 898
consensus_10834#1      GGCCATT-TATTGGGGGATTGGGCCATTTGAGGAGTCAATGAAGAGAATCGGGCTCAATA 306
consensus_10834#2      TCCCTCCGGGCTCCGGCATCCTCCTGCCTATGCNGCTCGGCCNGTGCTT----------- 179
                          *       *  ** **            *  *        * *  *           

consensus_10834#0      AAATGGCTCAATTCGAGCCNGTCAAAAATT 928
consensus_10834#1      AAATGNCTCCATTCGAAAAA---------- 326
consensus_10834#2      ------------------------------