cluster # 10838

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Oryza sativa
cluster # 10838 cluster # 10838 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10838#0 length = 670 sequences # 6

consensus_10838#1 length = 431 sequences # 1
consensus_10838#2 length = 385 sequences # 1

consensusID : consensus_10838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 670
fasta sequence

                              [GGGN-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACCATCACCCAGGGGGGAGAGGGAAAGGGGCTGTATATGTA]

[-] EMBL CA757873             [GGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACAGGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCT                                                                                                                                                                                                   ]
[-] EMBL CB000428             [                                                           TTTTTTTTTTTTAACAAAAGGGGCATTCCTCATCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGG                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB674743             [                                                                     gcAACAAAAGGGGCATGCCCCCTTTAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGAC                                       ]
[+] EMBL CB680843             [                                                                              GGCGTATGCCTCCTCAAATCTCCTTGGTGATCGATCACTGGACACATAACGTTAAATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAAATGGATGGAATGCGAAATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCCAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAAAACAAACGACGGGATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGGAGTAGTAGTAGTAGTAGTAGGGACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACCACCATCACCCAGGGGGGAGAGGGAAAGGGGCTGTATATGTA]
[+] EMBL CB637561             [                                                                                                                                                 CTCTC TTGGA TACATGGA AA A GG TGGAATGCGAGATT  AAGAAAAAAAAACATGCTTCTTCTCTCC TCAACCAAATT  TTTCAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTA                                                        ]
[-] EMBL CA999034             [                                                                                                                                                                      AAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATAGGAG   GTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACg                                      ]




>consensus_10838#0
GGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTAC
ACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATG
CGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAG
TAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACA
CTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGATCCAAACCACAAAAAAAG
AAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGACGGACGACTTTCTTCTTCT
TCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCAGACAGCATGGAGCTAGCTT
CTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCCAAGCAGCAGCAGTAGTATA
GGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGTCAAGCTGAATTACCATCTT
CCCTATAAGGAGTATTTGTGTTGGAGACGACCATCACCCAGGGGGGAGAGGGAAAGGGGC
TGTATATGTA

consensusID : consensus_10838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGAAAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATGGAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACGTTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGACGGGCGGNTTTCTT]

[-] EMBL C96859               [TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGAAAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATGGAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACGTTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGACGGGCGGNTTTCTT]




>consensus_10838#1
TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGAAAG
AAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTTGTT
GATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATGGAG
AAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAACCA
AAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCTCAA
CTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACGTTC
CAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGACGG
GCGGNTTTCTT

consensusID : consensus_10838#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [TTTTTTTTTTTGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGGTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA]

[-] EMBL AU029776             [TTTTTTTTTTTGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGGAAAACATGGATCAAAGAACGGTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA]




>consensus_10838#2
TTTTTTTTTTTGCCTCCTCAAATCTCCTTGTTGATCGATCACTGTACACATAACGTTAGA
TAGCAACTTTCCTCTCTTTGGAGTACATGGAGAAGATGGATGGAATGCGAGATTAAAAGA
AAAAAAAACATGCTTCTTCTCTCCATCAACCAAAGTCACAACAGTAGTAGTACTAATGGA
GGCATGCATGACAGACATGGAACTACCCTCAACTTGTCTTGACTACACTGACCCCAGGCA
AAACATGGAAAACATGGATCAAAGAACGGTCCAAACCACAAAAAAAGAAAAGGATGAACG
ATGATTAGTGGGACAAGGACGACGACGACGGACGACTTTCTTCTTCTTCCTCGACGCAAC
CGAGTTACCATTTGATTAGAGCNGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10838#0      GGGNTTTTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTTTTTTT 42
consensus_10838#2      ------------------------------------------------------------
consensus_10838#1      ---TTTTTTTTTTTTTTTTGAGAGTGAGCAAGAGAGCACCATCCAATCCTGTTAACAAGA 57
                                                                                   

consensus_10838#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTNAACAAAAGGGGCATGCCTCCTCAAATCTCCTT 102
consensus_10838#2      ------------------TTTTTTTTTT-------------TGCCTCCTCAAATCTCCTT 29
consensus_10838#1      AAGAAGNTAAAACTAGAACATCAACAGCAACAAAAGGGGCATGCCTCCTCAAATCTCCTT 117
                                           *                    *******************

consensus_10838#0      GTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATG 162
consensus_10838#2      GTTGATCGATCACTGTACACATAACGTTAGATAGCAACTTTCCTCTCTTTGGAGTACATG 89
consensus_10838#1      GTTGATCGNTCACTGTACACATAACGTTAGNTAGCAANTTTCCTCTCTTTGGAGTACATG 177
                       ******** ********************* ****** **********************

consensus_10838#0      GAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAA 222
consensus_10838#2      GAGAAGATGGATGGAATGCGAGATTAAAAGAAAAAAAAACATGCTTCTTCTCTCCATCAA 149
consensus_10838#1      GAGAAGNTGGNTGGAATGCGAGTTTAAAAGAAAAAAAAACATGNTTCTTCTCTCCATCAA 237
                       ****** *** *********** ******************** ****************

consensus_10838#0      CCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCT 282
consensus_10838#2      CCAAAGTCACAACAGTAGTAGTACTAATGGAGGCATGCATGACAGACATGGAACTACCCT 209
consensus_10838#1      CCAAAGTCACAACAGTAGTAGTACTANTGGAGGCATGCATGACAGACATGGAACTACCCT 297
                       ************************** *********************************

consensus_10838#0      CAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGG-AAAACATGGATCAAAGAACG 341
consensus_10838#2      CAACTTGTCTTGACTACACTGACCCCAGGCAAAACATGG-AAAACATGGATCAAAGAACG 268
consensus_10838#1      CAACTTGTNTTGACTACACTGACCCCAGGCAAAACATGGGAAAACATGGGTTCAAGGACG 357
                       ******** ****************************** ********* *  *** ***

consensus_10838#0      ATCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGAACAAGGACGACGACGA 401
consensus_10838#2      GTCCAAACCACAAAAAAAGAAAAGGATGAACGATGATTAGTGGGACAAGGACGACGACGA 328
consensus_10838#1      TTCCAAACCACAAAAAAGGAAAGGGNTGGACGTTGGTTAGTGGGACAGGGNCGACGACGA 417
                        **************** **** ** ** *** ** ******* *** ** *********

consensus_10838#0      CGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTCACCATTTGATTAGAGCTGATCA 461
consensus_10838#2      CGGACGACTTTCTTCTTCTTCCTCGACGCAACCGAGTTACCATTTGATTAGAGCNGA--- 385
consensus_10838#1      CGGGCGGNTTTCTT---------------------------------------------- 431
                       *** **  ******                                              

consensus_10838#0      GACAGCATGGAGCTAGCTTCTCCTTCGCCACACAAGAGCAGACGACGGCATTGCGATCCC 521
consensus_10838#2      ------------------------------------------------------------
consensus_10838#1      ------------------------------------------------------------
                                                                                   

consensus_10838#0      AAGCAGCAGCAGTAGTATAGGAGGTAGTAGTAGTAGTAGTAGTAGGTACTATAACAAAGT 581
consensus_10838#2      ------------------------------------------------------------
consensus_10838#1      ------------------------------------------------------------
                                                                                   

consensus_10838#0      CAAGCTGAATTACCATCTTCCCTATAAGGAGTATTTGTGTTGGAGACGACCATCACCCAG 641
consensus_10838#2      ------------------------------------------------------------
consensus_10838#1      ------------------------------------------------------------
                                                                                   

consensus_10838#0      GGGGGAGAGGGAAAGGGGCTGTATATGTA 670
consensus_10838#2      -----------------------------
consensus_10838#1      -----------------------------