cluster # 10842

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10842 cluster # 10842 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10842#0 length = 1070 sequences # 6

consensus_10842#1 length = 702 sequences # 1
consensus_10842#2 length = 437 sequences # 1

consensusID : consensus_10842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1070
fasta sequence

                              [TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA]

[+] EMBL AK064695             [TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAG              ]
[+] EMBL AU173954             [                                         CACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCC CC CGGCGCCcgcccgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA998311             [                                                                                                                                                                                                                                                                                                                                                                                 CCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAA                      ]
[+] EMBL CA998336             [                                                                                                                                                                                                                                                                                                                                                                                 CCTCCTCCACGGCGTGGACTTCCTGCTCTCCAGCCCCCTGCCACTCGACTAGAGCCATGATCTGAAGGCGAGGCTGGACGAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGCCAGGGATGTCGCGCCGCCGGCGAACGAGGACAGCCTCGAGCTCTTCTCCTCCTACAAGGACCAAATTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA762441             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         agaGGACGAGACAAGGGGGATGCAGGAGAGGAAGAAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGACCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTCCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAGACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA]
[-] EMBL OS38050              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cGTGG AT CT ATGG AACGGTCC  TTCATCATCAGATCATCTAGTAAA AATTGGCCAC TCTG TCCAAGACCAAAGAAAG TCAGTAGACATCTG ATTGG TTCAATAGTCAG TTTAATGAGGATACGACTGAAG TTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCNATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGC                 ]




>consensus_10842#0
TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGG
CTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCT
CCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGG
AGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACC
CCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCG
ACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCT
GGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAA
GAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTA
CGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTC
CTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTA
TTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC
TGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG
ATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC
TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATC
TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA
GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCT
TTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACA
CGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA

consensusID : consensus_10842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [GCCCGCCCCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTTAAGATTTAATTAATTTCCCAG]

[-] EMBL CB681450             [GCCCGCCCCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTTAAGATTTAATTAATTTCCCAG]




>consensus_10842#1
GCCCGCCCCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCAC
GCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGA
AGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGC
TCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCA
CGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGA
ATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCA
TCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGT
AGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCT
TCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGT
GATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTA
ATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATA
TATTACACGGCGTTATCAGTTAAGATTTAATTAATTTCCCAG

consensusID : consensus_10842#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATNTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACNCGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA]

[+] EMBL AU173955             [TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATNTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACNCGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA]




>consensus_10842#2
TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATNTTAGGATT
AGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATT
GGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGT
CAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATNTGAAGTGAACAATACGAA
TGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGA
GTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTN
TATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACNCGGCGTTATCAGTCGATA
TATTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10842#0      TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGG 60
consensus_10842#1      ------------------------------------------------------------
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCT 120
consensus_10842#1      ------------------------------------------------------------
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGG 180
consensus_10842#1      ------------------------------------------------------------
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      AGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACC 240
consensus_10842#1      ------------------------------------------------------------
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCG 300
consensus_10842#1      ------------------------------------------------------------
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      ACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCT 360
consensus_10842#1      -----------------------------------------------------GCCCGCC 7
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      GGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAA 420
consensus_10842#1      CCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAA 67
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      GAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTA 480
consensus_10842#1      GAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTA 127
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTC 540
consensus_10842#1      CGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTC 187
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      CTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTA 600
consensus_10842#1      CTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTA 247
consensus_10842#2      ------------------------------------------------------------
                                                                                   

consensus_10842#0      TTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 660
consensus_10842#1      TTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 307
consensus_10842#2      ------------------TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 42
                                         ******************************************

consensus_10842#0      TGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 720
consensus_10842#1      TGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 367
consensus_10842#2      TGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 102
                       ********* **************************************************

consensus_10842#0      ATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 780
consensus_10842#1      ATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 427
consensus_10842#2      ATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 162
                       ************************** *********************************

consensus_10842#0      TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATC 840
consensus_10842#1      TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATC 487
consensus_10842#2      TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATN 222
                       ****************************************************** **** 

consensus_10842#0      TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 900
consensus_10842#1      TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 547
consensus_10842#2      TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 282
                       ************************************************************

consensus_10842#0      GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCT 960
consensus_10842#1      GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCT 607
consensus_10842#2      GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCT 342
                       ********************************** *************************

consensus_10842#0      TTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACA 1020
consensus_10842#1      TTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACA 667
consensus_10842#2      TTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACN 402
                       ***************** ***************************************** 

consensus_10842#0      CGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA 1070
consensus_10842#1      CGGCGTTATCAGTTAAGAT-TTAATTAATTTCCCAG-------------- 702
consensus_10842#2      CGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA--------------- 437
                       *************  * ** ****  **      *