cluster # 10844

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Oryza sativa
cluster # 10844 cluster # 10844 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10844#0 length = 2976 sequences # 6

consensus_10844#1 length = 602 sequences # 2

consensusID : consensus_10844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2976
fasta sequence

                              [GCTCCCTGCTTCGGTCCTTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGCGAGAGAGGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCCGCCGCGGGCGCCCGCCGCCCGGCGGTGCCTCCGCCCCGCGCTGCCAC-TGGCCCTCAGGTTTCATGCGTTCCCCGGGCAGGTTCGCGTTTATCGCGGTGGTGGAATCGGAGTCGGAGTCCGCTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGGGATGAATGAGAAGGTGACTAATGGTAATCTAGAACAACCAACCACTTCCACATCCGGAAATAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATTCTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTGGATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACCTGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTCACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTACTTTGATGATTACGTGCTTTTCACTAGTTGTTGTTGGGGGATTCTTGTTTCATAAGTTCAGGAAGAACCAACAAAGTTTAGAGGAATGTTTTTGGGAAGCTTGGGCATGTCTAATTTCATCATCTACTCACCTAAGACAAAAGACGCGCATTGAGCGTGTG-CTTGGG-TTCTTTCTTGCTATCTGGGGCATATTGTTTTATTCTCGTTTGTTAAGCGCAACGGCAGAGCAGTTTAGAATCCAGATGCATAAGGTAAGAGAAGGAGCACAGCAGCAAGTCATTGAGGATGATCATATCATCATCTGTGGAGTCAATAGTCATCTGCCATCCATATTGAATCAATTGAACAAGTTCCATGAATCATCAATTAGGTTAGGAACTGCTACTGCAAGGAAGCAGAGAATTCTTCTTCTATCTGATCTTCACAGAAAGCAAATCGAGAAACTTGGAGATAGCTTTGCCAAAGATTTAAACCATATTGACGTCTTCACCAAGAGCTGTAGCCTTAGCTTGACAAAATCATTTGAGAGAGCAGCAGCAAATAAGGCAAAATCTATAATCATCCTGCCTGCAAAGAATGAACGATATGAAGTGGATACAGATGCATTTCTTTCCCTGCTGGCTCTGCAATCTCTTCCACAAATTGCATCTATTCCTACCATTGTTGAGGCTTCTAACTCAACCACATGCGATCTTCTGAAATCAATCACAGGCTTAAATGTGCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCTTATTAAAATCTACAGGCACTTGCTTAATTATCACAAAAACGTCTTCAACCTTTTCAGCTTTCGGGAAGTAGTAGGCATGAAGTATGTGGATGTGAGGCGTAGGATCCCAGATGCAGTTGTTTGTGGTATTTTCCGATCTGGAATGATGCACTTTCACCCATGTGAGGATGAAGTGCTGACAGAGAAAGACAAACTACTACTTATTGCTCCTGTTTCCTGGAGGAGAAGAGCACAGTCTACATTCTCAAATTCTCCAAATGGAGCACAAAATTCAAGTCATTACTCAGAGTCAACAGAGGGACAAAGATCGTCTAGTATGGCTCTTGAGGTGAATGAAACACGGCTAAATAGCATCAGAAAGCGCCCCTCAAAAACGCTCTCCAAGAGCAATGATTACACGCTAGGACCAAGAGAGCACGTGCTTATTGTTGGTTGGCGGCCAAAAGTTACTGATATGATTCGGGAATATGATAATTACCTTGGACCTGGCAGTGTATTGGAAATATTGTCAGAAACCCCTATTAAAGAGCGGAGCAGTATTGTCAACCCCCTCATGCAGAAACAACTGAAAAATATTAAAGTTAACCATCAGGTGGGATGTCCTATGAACTATGATACTCTAAAGGAAGCAATAATTAAATTTAAGAAATCCAGGAAGCATGACCAAAATGTTCCGTTTTCAGTTGTCGTAATATCTGACAAAGACTGGCTAGGTGGAGATACTGCACAGGTTGATAAACAGTTAGCGTATACTCTTCTCCTTGCTGAGAACATTTGCCAGAAACATGACATTAAGGTTGAGCATCTTGTATCAGAAATTGTAGACACGGGACTGGGAAAGCAAATGTCTAGAATAAAACCATCCCTCTCATTTATTGGAGCAGAGGAAGTTATGAGCCTTGTAACAGCACAGGTTGCGGGAAGTAGTGAGTTGAATGAAGTATGG-AAGGATATT-CTGAACGCTGAAGGAGATGAGATCTACAT-CAAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCT-CACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAA-GCNGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCA-GTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCA-GTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCA-TTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAAAAAAAA]

[+] EMBL CB656002             [GCTCCCTGCTTCGGTCCTTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGCGAGAGAGGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCCGCCGCGGGCGCCCGCCGCCCGGCGGTGCCTCCGCCCCGCGCTGCCAC TGGCCCTCAGGTTTCATGCGTTCCCCGGGCAGGTTCGCGCTTATCGCGGTGGTGGAATCGGAGTCGGAGTCCGCTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGGGATGAATGAGAAGGTGACTAATGGTAATCTAGAGCAACCAACCACTTCCACATCCGGAAATAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATTCTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTGGATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACCTGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTCACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTACTTTGATGATTACGAGCTTTTCACTACCTGTTGTTGGGGGga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK065571             [       GCTTCGGTCCTTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGCGAGAGAGGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCCGCCGCGGGCGCCCGCCGCCCGGCGGTGCCTCCGCCCCGCGCTGCCAC TGGCCCTCAGGTTTCATGCGTTCCCCGGGCAGGTTCGCGTTTATCGCGGTGGTGGAATCGGAGTCGGAGTCCGCTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGGGATGAATGAGAAGGTGACTAATGGTAATCTAGAACAACCAACCACTTCCACATCCGGAAATAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATTCTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTGGATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACCTGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTCACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTACTTTGATGATTACGTGCTTTTCACTAGTTGTTGTTGGGGGATTCTTGTTTCATAAGTTCAGGAAGAACCAACAAAGTTTAGAGGAATGTTTTTGGGAAGCTTGGGCATGTCTAATTTCATCATCTACTCACCTAAGACAAAAGACGCGCATTGAGCGTGTG CTTGGG TTCTTTCTTGCTATCTGGGGCATATTGTTTTATTCTCGTTTGTTAAGCGCAACGGCAGAGCAGTTTAGAATCCAGATGCATAAGGTAAGAGAAGGAGCACAGCAGCAAGTCATTGAGGATGATCATATCATCATCTGTGGAGTCAATAGTCATCTGCCATCCATATTGAATCAATTGAACAAGTTCCATGAATCATCAATTAGGTTAGGAACTGCTACTGCAAGGAAGCAGAGAATTCTTCTTCTATCTGATCTTCACAGAAAGCAAATCGAGAAACTTGGAGATAGCTTTGCCAAAGATTTAAACCATATTGACGTCTTCACCAAGAGCTGTAGCCTTAGCTTGACAAAATCATTTGAGAGAGCAGCAGCAAATAAGGCAAAATCTATAATCATCCTGCCTGCAAAGAATGAACGATATGAAGTGGATACAGATGCATTTCTTTCCCTGCTGGCTCTGCAATCTCTTCCACAAATTGCATCTATTCCTACCATTGTTGAGGCTTCTAACTCAACCACATGCGATCTTCTGAAATCAATCACAGGCTTAAATGTGCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCTTATTAAAATCTACAGGCACTTGCTTAATTATCACAAAAACGTCTTCAACCTTTTCAGCTTTCGGGAAGTAGTAGGCATGAAGTATGTGGATGTGAGGCGTAGGATCCCAGATGCAGTTGTTTGTGGTATTTTCCGATCTGGAATGATGCACTTTCACCCATGTGAGGATGAAGTGCTGACAGAGAAAGACAAACTACTACTTATTGCTCCTGTTTCCTGGAGGAGAAGAGCACAGTCTACATTCTCAAATTCTCCAAATGGAGCACAAAATTCAAGTCATTACTCAGAGTCAACAGAGGGACAAAGATCGTCTAGTATGGCTCTTGAGGTGAATGAAACACGGCTAAATAGCATCAGAAAGCGCCCCTCAAAAACGCTCTCCAAGAGCAATGATTACACGCTAGGACCAAGAGAGCACGTGCTTATTGTTGGTTGGCGGCCAAAAGTTACTGATATGATTCGGGAATATGATAATTACCTTGGACCTGGCAGTGTATTGGAAATATTGTCAGAAACCCCTATTAAAGAGCGGAGCAGTATTGTCAACCCCCTCATGCAGAAACAACTGAAAAATATTAAAGTTAACCATCAGGTGGGATGTCCTATGAACTATGATACTCTAAAGGAAGCAATAATTAAATTTAAGAAATCCAGGAAGCATGACCAAAATGTTCCGTTTTCAGTTGTCGTAATATCTGACAAAGACTGGCTAGGTGGAGATACTGCACAGGTTGATAAACAGTTAGCGTATACTCTTCTCCTTGCTGAGAACATTTGCCAGAAACATGACATTAAGGTTGAGCATCTTGTATCAGAAATTGTAGACACGGGACTGGGAAAGCAAATGTCTAGAATAAAACCATCCCTCTCATTTATTGGAGCAGAGGAAGTTATGAGCCTTGTAACAGCACAGGTTGCGGGAAGTAGTGAGTTGAATGAAGTATGG AAGGATATT CTGAACGCTGAAGGAGATGAGATCTACAT CAAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCT CACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAA GCAGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCA GTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCA GTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCA TTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTT             ]
[+] EMBL C74422               [                 TTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGCGAGAGANGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCCGCCGCGGGCGCCCGCCGCCCGGCGNTGCCTCCGCCCCGCGCTGCCACNNAGCCCTCAGGTTTCATGCGTNCCCCGGGCAGGTTCGCGTTTATCG GGTGGTGGAATCGGAGTCGGAGTTCGCTCCGCGGGCCATCTTCCAAGCAAGCGA GNCTAGTAAGAATGTTCGACTCAGCAATGGGGATGAATNAAAAGGTTACTTATGGTAATCTAG ACAACCAA CACTTTCAAATCCGGAAATAA CCAA CTTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF304004             [                                                                                                                                                                                                                 TATCGCGGTGGTGGAATCGGAGTCGGAGTCCGCTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGGGATGAATGAGAAGGTGACTAATGGTAATCTAGAACAACCAACCACTTCCACATCCGGAAATAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATTCTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTGGATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACCTGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTCACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTACTTTGATGATTACGTGCTTTTCACTAGTTGTTGTTGGGGGATTCTTGTTTCATAAGTTCAGGAAGAACCAACAAAGTTTAGAGGAATGTTTTTGGGAAGCTTGGGCATGTCTAATTTCATCATCTACTCACCTAAGACAAAAGACGCGCATTGAGCGTGTGCCTTGGGTTTCTTTCTTGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU029633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGAAGTATGGAAAGGNTATTCCTGAACGCTGAAGGAGNTGAGATCTACATCCAAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCTCCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAA GCNGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCA GTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCA GTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCA TTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAAAAAAAA]
[+] EMBL BI809180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tgtTCAAGGGCCAGAACACGGTATAT AATCCT CGACCA  TTGGAGCTACTTTCTTTTGAAATGACAGATC ACTCATTGTGATATCTGAGTTTGAAGGTG ACAGCCACGTTGTAAGGGGTGGAGACACTTCCACAT AAATTTCCAGCTTGATGTTCTGCTGAAATTTCACGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTT CCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCACTTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCCACTTGTCTGATGTAGCCATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAAAAAAA ]




>consensus_10844#0
GCTCCCTGCTTCGGTCCTTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGC
GAGAGAGGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCC
GCCGCGGGCGCCCGCCGCCCGGCGGTGCCTCCGCCCCGCGCTGCCACTGGCCCTCAGGTT
TCATGCGTTCCCCGGGCAGGTTCGCGTTTATCGCGGTGGTGGAATCGGAGTCGGAGTCCG
CTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGG
GATGAATGAGAAGGTGACTAATGGTAATCTAGAACAACCAACCACTTCCACATCCGGAAA
TAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATT
CTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTG
GATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACC
TGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTC
ACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTAC
TTTGATGATTACGTGCTTTTCACTAGTTGTTGTTGGGGGATTCTTGTTTCATAAGTTCAG
GAAGAACCAACAAAGTTTAGAGGAATGTTTTTGGGAAGCTTGGGCATGTCTAATTTCATC
ATCTACTCACCTAAGACAAAAGACGCGCATTGAGCGTGTGCTTGGGTTCTTTCTTGCTAT
CTGGGGCATATTGTTTTATTCTCGTTTGTTAAGCGCAACGGCAGAGCAGTTTAGAATCCA
GATGCATAAGGTAAGAGAAGGAGCACAGCAGCAAGTCATTGAGGATGATCATATCATCAT
CTGTGGAGTCAATAGTCATCTGCCATCCATATTGAATCAATTGAACAAGTTCCATGAATC
ATCAATTAGGTTAGGAACTGCTACTGCAAGGAAGCAGAGAATTCTTCTTCTATCTGATCT
TCACAGAAAGCAAATCGAGAAACTTGGAGATAGCTTTGCCAAAGATTTAAACCATATTGA
CGTCTTCACCAAGAGCTGTAGCCTTAGCTTGACAAAATCATTTGAGAGAGCAGCAGCAAA
TAAGGCAAAATCTATAATCATCCTGCCTGCAAAGAATGAACGATATGAAGTGGATACAGA
TGCATTTCTTTCCCTGCTGGCTCTGCAATCTCTTCCACAAATTGCATCTATTCCTACCAT
TGTTGAGGCTTCTAACTCAACCACATGCGATCTTCTGAAATCAATCACAGGCTTAAATGT
GCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCT
TATTAAAATCTACAGGCACTTGCTTAATTATCACAAAAACGTCTTCAACCTTTTCAGCTT
TCGGGAAGTAGTAGGCATGAAGTATGTGGATGTGAGGCGTAGGATCCCAGATGCAGTTGT
TTGTGGTATTTTCCGATCTGGAATGATGCACTTTCACCCATGTGAGGATGAAGTGCTGAC
AGAGAAAGACAAACTACTACTTATTGCTCCTGTTTCCTGGAGGAGAAGAGCACAGTCTAC
ATTCTCAAATTCTCCAAATGGAGCACAAAATTCAAGTCATTACTCAGAGTCAACAGAGGG
ACAAAGATCGTCTAGTATGGCTCTTGAGGTGAATGAAACACGGCTAAATAGCATCAGAAA
GCGCCCCTCAAAAACGCTCTCCAAGAGCAATGATTACACGCTAGGACCAAGAGAGCACGT
GCTTATTGTTGGTTGGCGGCCAAAAGTTACTGATATGATTCGGGAATATGATAATTACCT
TGGACCTGGCAGTGTATTGGAAATATTGTCAGAAACCCCTATTAAAGAGCGGAGCAGTAT
TGTCAACCCCCTCATGCAGAAACAACTGAAAAATATTAAAGTTAACCATCAGGTGGGATG
TCCTATGAACTATGATACTCTAAAGGAAGCAATAATTAAATTTAAGAAATCCAGGAAGCA
TGACCAAAATGTTCCGTTTTCAGTTGTCGTAATATCTGACAAAGACTGGCTAGGTGGAGA
TACTGCACAGGTTGATAAACAGTTAGCGTATACTCTTCTCCTTGCTGAGAACATTTGCCA
GAAACATGACATTAAGGTTGAGCATCTTGTATCAGAAATTGTAGACACGGGACTGGGAAA
GCAAATGTCTAGAATAAAACCATCCCTCTCATTTATTGGAGCAGAGGAAGTTATGAGCCT
TGTAACAGCACAGGTTGCGGGAAGTAGTGAGTTGAATGAAGTATGGAAGGATATTCTGAA
CGCTGAAGGAGATGAGATCTACATCAAGGAAATAGGATTCTACATGAAAGAAGGGGAGAA
GATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTA
TGTCAAGGGCAAGAAGCNGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGA
AATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGTAAGGGG
TGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTAGCTTCA
TCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGGGTTCAA
AGGGAAATAAAAAAAAAGTCATAAAGGCCATTTAGTAAAATATCATATATGCCTTAATAG
CTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCT
GTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATA
AAGAAATGGAAAGGAAAGTTCTTTGAAAAAAAAAAA

consensusID : consensus_10844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence

                              [CTGACCAATTCTTGNATTTTTGTGATAGTTCAAGGAACTTTTTTGCTGCCCATTTTCTAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAAGCAGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTA-GATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCATTTA-GTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAA]

[+] EMBL AU100892             [CTGACCAATTCTTGNATTTTTGTGATAGTTCAAGGAACTTTTTTGCTGCCCATTTTCTAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAAGCAGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTA GATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCATTTA GTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAA]
[+] EMBL C27883               [  GACCAATTCTTGTATTTTTGTGATAGTTCAAGGAACTTTTTTGCTGCACATTTTCTAGGAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAAGCAGTATATAAATCCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGGATGTTAATCATTCTTTCCCCTGGGNTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCATTTAGGTAAAATATCATAT                                                                                                                                                                  ]




>consensus_10844#1
CTGACCAATTCTTGNATTTTTGTGATAGTTCAAGGAACTTTTTTGCTGCCCATTTTCTAG
GAAATAGGATTCTACATGAAAGAAGGGGAGAAGATATCATTTTCAGAGCTCACTGAAAGG
GCGATTTTGCGTCGTGAAGTTGCGGTTGGCTATGTCAAGGGCAAGAAGCAGTATATAAAT
CCTACGAACAAGTTGGAGCTACTTTCTTTTGAAATGACAGATCAACTCATTGTGATATCT
GAGTTTGAAGGTGAACAGCCAGTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAG
CTTGATGTTCTGCTGAAATTTCAGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGT
TAGATGTTAATCATTCTTTCCCCTGGGTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGC
CATTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTA
TTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTTTATTGTAAACATAGTTGATTCACAT
AGTCAACTTGTCTGATGTAGCAATCTTGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10844#0      GCTCCCTGCTTCGGTCCTTCCGCCCGCGCCGCGCGAGCACCTCGCCGCCGGTGGAGCAGC 60
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GAGAGAGGTGGAGGAGGGAGGGATGAGATCGCAGCTCGACGCCGCCGCCGTCTCGTCGCC 120
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GCCGCGGGCGCCCGCCGCCCGGCGGTGCCTCCGCCCCGCGCTGCCACTGGCCCTCAGGTT 180
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TCATGCGTTCCCCGGGCAGGTTCGCGTTTATCGCGGTGGTGGAATCGGAGTCGGAGTCCG 240
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      CTCCGCGGGCCATCTCCCAAGCAAGCGAGGACTAGTAAGAGTGTTCGACTCAGCAATGGG 300
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GATGAATGAGAAGGTGACTAATGGTAATCTAGAACAACCAACCACTTCCACATCCGGAAA 360
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TAACCCAAGCTTTCCTGCTGAGGGAAACTTCAACGTGGTTACTGTTGTAAGCATCACATT 420
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      CTGTGTTCTACACAAAATTGTTATTGGCCAGATGCAGTTGATGACAAAATTTCTCCCTTG 480
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GATGTCACACAACATTACAAGTTTACCATTGGCATGCATATCAGATCCTATGAAAAAACC 540
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGTTCCTCTGAAGCTAGATGTTAGTTTTCCACAATTGCCTGATATCCGATGGAGCATTTC 600
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      ACGCTTGTACTACCTATTCAATTCACAGCTTGAACGGAACATTGCCTTGTCTATCATTAC 660
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TTTGATGATTACGTGCTTTTCACTAGTTGTTGTTGGGGGATTCTTGTTTCATAAGTTCAG 720
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GAAGAACCAACAAAGTTTAGAGGAATGTTTTTGGGAAGCTTGGGCATGTCTAATTTCATC 780
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      ATCTACTCACCTAAGACAAAAGACGCGCATTGAGCGTGTGCTTGGGTTCTTTCTTGCTAT 840
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      CTGGGGCATATTGTTTTATTCTCGTTTGTTAAGCGCAACGGCAGAGCAGTTTAGAATCCA 900
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GATGCATAAGGTAAGAGAAGGAGCACAGCAGCAAGTCATTGAGGATGATCATATCATCAT 960
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      CTGTGGAGTCAATAGTCATCTGCCATCCATATTGAATCAATTGAACAAGTTCCATGAATC 1020
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      ATCAATTAGGTTAGGAACTGCTACTGCAAGGAAGCAGAGAATTCTTCTTCTATCTGATCT 1080
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TCACAGAAAGCAAATCGAGAAACTTGGAGATAGCTTTGCCAAAGATTTAAACCATATTGA 1140
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      CGTCTTCACCAAGAGCTGTAGCCTTAGCTTGACAAAATCATTTGAGAGAGCAGCAGCAAA 1200
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TAAGGCAAAATCTATAATCATCCTGCCTGCAAAGAATGAACGATATGAAGTGGATACAGA 1260
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGCATTTCTTTCCCTGCTGGCTCTGCAATCTCTTCCACAAATTGCATCTATTCCTACCAT 1320
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGTTGAGGCTTCTAACTCAACCACATGCGATCTTCTGAAATCAATCACAGGCTTAAATGT 1380
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCT 1440
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TATTAAAATCTACAGGCACTTGCTTAATTATCACAAAAACGTCTTCAACCTTTTCAGCTT 1500
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TCGGGAAGTAGTAGGCATGAAGTATGTGGATGTGAGGCGTAGGATCCCAGATGCAGTTGT 1560
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TTGTGGTATTTTCCGATCTGGAATGATGCACTTTCACCCATGTGAGGATGAAGTGCTGAC 1620
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      AGAGAAAGACAAACTACTACTTATTGCTCCTGTTTCCTGGAGGAGAAGAGCACAGTCTAC 1680
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      ATTCTCAAATTCTCCAAATGGAGCACAAAATTCAAGTCATTACTCAGAGTCAACAGAGGG 1740
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      ACAAAGATCGTCTAGTATGGCTCTTGAGGTGAATGAAACACGGCTAAATAGCATCAGAAA 1800
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GCGCCCCTCAAAAACGCTCTCCAAGAGCAATGATTACACGCTAGGACCAAGAGAGCACGT 1860
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GCTTATTGTTGGTTGGCGGCCAAAAGTTACTGATATGATTCGGGAATATGATAATTACCT 1920
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGGACCTGGCAGTGTATTGGAAATATTGTCAGAAACCCCTATTAAAGAGCGGAGCAGTAT 1980
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGTCAACCCCCTCATGCAGAAACAACTGAAAAATATTAAAGTTAACCATCAGGTGGGATG 2040
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TCCTATGAACTATGATACTCTAAAGGAAGCAATAATTAAATTTAAGAAATCCAGGAAGCA 2100
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGACCAAAATGTTCCGTTTTCAGTTGTCGTAATATCTGACAAAGACTGGCTAGGTGGAGA 2160
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TACTGCACAGGTTGATAAACAGTTAGCGTATACTCTTCTCCTTGCTGAGAACATTTGCCA 2220
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GAAACATGACATTAAGGTTGAGCATCTTGTATCAGAAATTGTAGACACGGGACTGGGAAA 2280
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      GCAAATGTCTAGAATAAAACCATCCCTCTCATTTATTGGAGCAGAGGAAGTTATGAGCCT 2340
consensus_10844#1      ------------------------------------------------------------
                                                                                   

consensus_10844#0      TGTAACAGCACAGGTTGCGGGAAGTAGTGAGTTGAATGAAGTATGGAAGGATATTCTGAA 2400
consensus_10844#1      -------------------------------CTGACCAATTCTTGNAT---TTTTGTGAT 26
                                                       ***   *    ** *    * ** *** 

consensus_10844#0      CGCTGAAGGAGAT-----GAGATCTACAT-CAAGGAAATAGGATTCTACATGAAAGAAGG 2454
consensus_10844#1      AGTTCAAGGAACTTTTTTGCTGCCCATTTTCTAGGAAATAGGATTCTACATGAAAGAAGG 86
                        * * *****  *     *    * *  * * ****************************

consensus_10844#0      GGAGAAGATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGT 2514
consensus_10844#1      GGAGAAGATATCATTTTCAGAGCTCACTGAAAGGGCGATTTTGCGTCGTGAAGTTGCGGT 146
                       ************************************************************

consensus_10844#0      TGGCTATGTCAAGGGCAAGAAGCNGTATATAAATCCTACGAACAAGTTGGAGCTACTTTC 2574
consensus_10844#1      TGGCTATGTCAAGGGCAAGAAGCAGTATATAAATCCTACGAACAAGTTGGAGCTACTTTC 206
                       *********************** ************************************

consensus_10844#0      TTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGT 2634
consensus_10844#1      TTTTGAAATGACAGATCAACTCATTGTGATATCTGAGTTTGAAGGTGAACAGCCAGTTGT 266
                       ************************************************************

consensus_10844#0      AAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTA 2694
consensus_10844#1      AAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTGAAATTTCAGTA 326
                       ************************************************************

consensus_10844#0      GCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGG 2754
consensus_10844#1      GCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGG 386
                       ************************************************************

consensus_10844#0      GTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCATTTAGTAAAATATCATATATGCCT 2814
consensus_10844#1      GTTCAAAGGGAAATAAAAAAAAAGTCATAAAGGCCATTTAGTAAAATATCATATATGCCT 446
                       ************************************************************

consensus_10844#0      TAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATC 2874
consensus_10844#1      TAATAGCTGTAGAACCTTTTGAGCTTTTCTTTTATTTATCTGCAGCTAAACTGCAGAATC 506
                       ************************************************************

consensus_10844#0      TTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCT 2934
consensus_10844#1      TTTTCTGTTTATTGTAAACATAGTTGATTCACATAGTCAACTTGTCTGATGTAGCAATCT 566
                       ************************************************************

consensus_10844#0      TGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAAAAAAAA 2976
consensus_10844#1      TGCATAAAGAAATGGAAAGGAAAGTTCTTTGAAAAA------ 602
                       ************************************