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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1541 fasta sequence
[TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAATGTGCTATGTACTTTGGGAGTGTTTTCATGTGAAAAAAAAAAAAAAAAAAAATAAAAAG]
[+] EMBL AK064362 [TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAATGTGCTATGTACTTTGGGAGTG ]
[+] EMBL CB642906 [ TCTCCTCTGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCCATGTGTGGCAACATA ]
[-] EMBL CB642907 [ GCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCCCCAACTCTTCCTGGGTTTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCCCTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTTCGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTTTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCCCTAAACTTTGATTAAATGTGCTATGTACTTTGGGGGTGTTTTCATGTGAAAAAAAAAAAAAAAAAAAATAAAAAG]
consensusID : consensus_10845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1471 fasta sequence
[CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAA]
[+] EMBL AK103153 [CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAA]
consensusID : consensus_10845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence
[CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCGCCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGCGCCGCAG-TTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCGAAAAACAAAGACACATATGACAACTCGGCGAGGTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAGGTCTGTTTTGATTGTTGTGGCAATGGAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTATAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGCCGTGCTGC]
[+] EMBL CB681241 [CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCGCCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGCGCCGCAG TTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCGAAAAACAAAGACACATATGACAACTCGGCGAGGTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAGGTCTGTTTTGATTGTTGTGGCAATGGAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTATAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGC ]
[+] EMBL CB667486 [ cgtcctTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCGAGCCGGAGCGCCGCAGATTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAAAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCAAAAAACAAAGACACATATGACAACTCGGCGAGTTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGGTCTGTTTTGATTGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGCCGTGCTGC]
consensusID : consensus_10845#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[AGAGGAGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGAAAATGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGCCGAAGTAGAAGTAGAGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAGCTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACTTCATGCCAGGATCATCACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTTTGTTGCTGGATAGCTATGCTGCTTCAGCTATTTCTGTTGGATGCGGTTGCACATTGTCTGTCTTAGCCTGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTAAGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCATGTAAGATTTTACCGTGAATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG]
[-] EMBL CB681242 [AGAGGAGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGAAAATGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGCCGAAGTAGAAGTAGAGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAGCTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACTTCATGCCAGGATCATCACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTTTGTTGCTGGATAGCTATGCTGCTTCAGCTATTTCTGTTGGATGCGGTTGCACATTGTCTGTCTTAGCCTGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTAAGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCATGTAAGATTTTACCGTGAATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG]
consensusID : consensus_10845#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGGGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAAGCTTGCTGTTTCCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTTGCCTGTCTGGCCTATGAACCCATTGGGCAGTGCTCTCTATGCCTATTTGTGCCTGTTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATATTGGTAATAATAGCTATTAGAAAATTAAATTTCAAAAAA]
[+] EMBL BI802494 [TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGGGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAAGCTTGCTGTTTCCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTTGCCTGTCTGGCCTATGAACCCATTGGGCAGTGCTCTCTATGCCTATTTGTGCCTGTTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATATTGGTAATAATAGCTATTAGAAAATTAAATTTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10845#0 TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCT 60
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 -----------CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAG 49
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGG 120
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 CAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCC 109
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 TTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACC 180
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 CCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGC 169
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGG 240
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 TGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGG 229
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 ACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGAT 300
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 ACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGAT 289
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAAC 360
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 GCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAAC 349
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 AAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATG 420
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 AAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATG 409
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 AATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAA 480
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 AATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAA 469
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 TTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAG 540
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 TTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAG 529
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 CAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGT 600
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 CAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGT 589
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGT 660
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 GGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGT 649
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCT 720
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 GGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCT 709
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCA 780
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 GCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCA 769
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 ATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAG 840
consensus_10845#3 ------------------------------------------------------------
consensus_10845#1 ATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAG 829
consensus_10845#2 ------------------------------------------------------------
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 CCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGT-ATAAAGAACTTGA 899
consensus_10845#3 ------------------------AGAGGAGGCCGGGGTGGTGGGT-ATAAAGAACTTGA 35
consensus_10845#1 CCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGT-ATAAAGAACTTGA 888
consensus_10845#2 ---------------------CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCG 39
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGA 959
consensus_10845#3 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGA 95
consensus_10845#1 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGA 948
consensus_10845#2 CCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGC 99
consensus_10845#4 ------------------------------------------------------------
consensus_10845#0 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGA 1019
consensus_10845#3 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGA 155
consensus_10845#1 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGA 1008
consensus_10845#2 GCCGCAGTTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAA---TGGCTCTGTTT 156
consensus_10845#4 ------TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAA-CTTGGTGGAC--A 51
** ** * **
consensus_10845#0 AAATGCACCAACT-CTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCT 1078
consensus_10845#3 AAATGCACCAACC-CTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTT 214
consensus_10845#1 AAATGCACCAACT-CTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCT 1067
consensus_10845#2 ATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCT---GGCCGATTATTTTGGCA 213
consensus_10845#4 AGATGAATTAGAT---------AACGGGGAAGGCAGGGGGAGAGGGCGCG-GTGATGGTC 101
* ** * * * * ** * ***
consensus_10845#0 CCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACT--ACGA 1136
consensus_10845#3 CAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACT--ACAA 272
consensus_10845#1 CCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACT--ACGA 1125
consensus_10845#2 CCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTT--ACAG 271
consensus_10845#4 CAG--GAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAA 159
* * * * * * * * *
consensus_10845#0 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAG- 1193
consensus_10845#3 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGC 330
consensus_10845#1 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAG- 1182
consensus_10845#2 GGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGC 331
consensus_10845#4 TGTAAACTTTGCCT-----TTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCC-TGC 213
* * * * * * * * *
consensus_10845#0 -----------TAG-AGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAG 1241
consensus_10845#3 CGAAGTAGAAGTAG-AGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAG 389
consensus_10845#1 -----------TAG-AGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAG 1230
consensus_10845#2 TGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGT 391
consensus_10845#4 TGGTGT-----TAGTGGATCA----AGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGG 264
** * * * * * *
consensus_10845#0 CTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACG 1301
consensus_10845#3 CTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACT 449
consensus_10845#1 CTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACG 1290
consensus_10845#2 CCATATAGCTGAGTCGAAAAACAAAGACACATATGACAAC--TCGGCGAGGTTGAACAAC 449
consensus_10845#4 --AAGTGATGATGCAAGAGGAGGCAGCC--GTGCTGCTGCTGCTGCTGCTGTTGGTGGTC 320
* * * * * * * **
consensus_10845#0 --ATGGCAG-ATTTTC--GCATGTTGCATGCCGATTTT-GGTTTTATGATACTTCCGTTT 1355
consensus_10845#3 TCATGCCAGGATCATC--ACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTT 507
consensus_10845#1 --ATGGCAG-ATTTTC--GCATGTTGCATGCCGATTTT-GGTTTTATGATACTTCCGTTT 1344
consensus_10845#2 T-CTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCA 508
consensus_10845#4 --CTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAA 378
* * * * ** * *
consensus_10845#0 TGCTGCTGGAT-AGCTATGCTGCTTCAGCTAGTGCTG--TCAGATGGGTTTGCACATT-- 1410
consensus_10845#3 TGTTGCTGGAT-AGCTATGCTGCTTCAGCTATTTCTG--TTGGATGCGGTTGCACATT-- 562
consensus_10845#1 TGCTGCTGGAT-AGCTATGCTGCTTCAGCTAGTGCTG--TCAGATGGGTTTGCACATT-- 1399
consensus_10845#2 CGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAG 568
consensus_10845#4 GCTTGCTGTTT--CCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTT 436
** ** * * * *
consensus_10845#0 ATTTGTCTTGGCC-TGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTA 1469
consensus_10845#3 GTCTGTCTTAGCC-TGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTA 621
consensus_10845#1 ATTTGTCTTGGCC-TGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTA 1458
consensus_10845#2 GTCTGTTTTGATTGTTGTGGCAATGGA-AACTTTGCCTTTCGTGGTGTCTGTAATCGCTG 627
consensus_10845#4 GCCTGTCTGGCCTATGAACCCATTGGGCAG---TGCTCTCTATGCCTATTTGTGCC--TG 491
*** * * ** * * * * * *
consensus_10845#0 AACTTTGATTAAATGTGCTATGTACTTTGGGAGTGTTTT-CA-TGTGAAAAAAAAAAAAA 1527
consensus_10845#3 AGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCA-TGTAAGATTTTACCGTG 680
consensus_10845#1 AACTTTGATTAAA----------------------------------------------- 1471
consensus_10845#2 TGGAGCTGCTCGCCCTGCCG-GTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTA 686
consensus_10845#4 TTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATA 551
*
consensus_10845#0 AAAAAAATAAAAAG------------------------------ 1541
consensus_10845#3 AATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG- 723
consensus_10845#1 --------------------------------------------
consensus_10845#2 TAGGCCGTGGAAGTG-ACGATGCAAAAGGACGCAGCCGTGCTGC 729
consensus_10845#4 TTGGTAATAATAGCT-ATTAGAAAATTAAATTTCAAAAAA---- 590
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||