cluster # 10848

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Oryza sativa
cluster # 10848 cluster # 10848 Sequences # 8 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10848#0 length = 806 sequences # 4
consensus_10848#1 length = 680 sequences # 1

consensus_10848#2 length = 675 sequences # 1
consensus_10848#3 length = 575 sequences # 1
consensus_10848#4 length = 387 sequences # 1

consensusID : consensus_10848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 806
fasta sequence

                              [ACCATACTGTGCGATGGACTTAAATGGGCCAAGCTGCTCTGCCTCTGTCTGAAACTGTGAACCACCAAAAACAGAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCACGCCTCCACCTCGGCGCCGCAACTCTGCACGTCTATTCGTCGCTGGTAGTGATGCCGACGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGCTTCGCCGTCGTCCCCGTGTCCTGTCCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATC-AATGAC-ATCACCTGAAGTATCTGTTGGAC-ATCCAC-AAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTA-GAA-TTTTGATAATTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCACTTCAAGAATTATTAGACTGATACAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTCGGGT-AAAATAAGTGATTTTGTTGTATTGTATCTGAACTCACTTTCTAGCATATGAGGTTGATTTACATGAA]

[+] EMBL AK111265             [ACCATACTGTGCGATGGACTTAAATGGGCCAAGCTGCTCTGCCTCTGTCTGAAACTGTGAACCACCAAAAACAGAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCACGCCTCCACCTCGGCGCCGCAACTCTGCACGTCTATTCGTCGCTGGTAGTGATGCCGACGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGCTTCGCCGTCGTCCCCGTGTCCTGTCCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATC AATGAC ATCACCTGAAGTATCTGTTGGAC ATCCAC AAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTA GAA TTTTGATAATTGTTGAATGGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTCACTTCAAGAATTATTAGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTCGGGT AAAATAAGTGATTTTGTTGTATTGTATCTGAACTCACTTTCTAGCATATGAGGTTGATTTACATGAA]
[+] EMBL C72228               [                                                CTGAAACTGTGAACCACCAAAAACAGAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCACGCCTCCACCTCGGCGCCGCAACTCTGCACGTCTATTCGTCGCTGGTAGTGATGCCGACGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGCTTCG CGTCGTCCCCGTGTCCTGTCCATGGGTCGCATCANCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATCAAATGACAATCANCTGAAGTATCTGTTGGACAATCCACAAAGACTGCTCTAATCAATCTGAAGAATGGG CACAGAGGAAGAGTGCTGTTTTTGATGCATNAG ACTAGGAATTTTTGATAAATGTTGAATG                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB096796             [                                                         TGAA CNCCAAAAACAAAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCACGCCTCCACCTCGGCGCCGCAACTCTGCACGTCGATTCGTCGCCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCCTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATC AATGAC ATCACCTGAAGTATCTGTTGGAC ATCCAC AAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTA GAA TTTTGATAATTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCACTTTAAGAATTATTAGACTGATACAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTCGGGTAAAAATAAGTGATTTTGGTGn                                               ]
[-] EMBL CB965307             [                                                                                                                                                                              CGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCCTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATC AATGAC ATCACCTGAAGTATCTGTTGGAC ATCCAC AAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTA GAA TTTTGATAATTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCACTTCAAGAATTATTAGACTGATACAAGACTTATGTAGAAATTTGTAGTGCATAATC AATACTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTGTGA                                                                                        ]




>consensus_10848#0
ACCATACTGTGCGATGGACTTAAATGGGCCAAGCTGCTCTGCCTCTGTCTGAAACTGTGA
ACCACCAAAAACAGAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCAC
GCCTCCACCTCGGCGCCGCAACTCTGCACGTCTATTCGTCGCTGGTAGTGATGCCGACGA
AGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACG
GGCGTGCCGCCGCTGCTCTCCTCACGGTGGGCTTCGCCGTCGTCCCCGTGTCCTGTCCAT
GGGTCGCATCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCAGATC
AATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCAATCTGAAGA
ATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTTGATAATTGT
TGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCA
TGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCACTT
CAAGAATTATTAGACTGATACAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACT
GTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTGTGAG
TTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCTGAACTCACTTTC
TAGCATATGAGGTTGATTTACATGAA

consensusID : consensus_10848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [ACCCCCCCAAAACCAAAGGTTCTTCTCGTTCCCCAGGGCTCTGGGCCCTAGTGAGCTCCCGCCTCCCCCTTGGCCCCGCAATTCTGCCCGTCAATTCGTAACCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGTTTTGCCGCCGTCCCCGTGTCCTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTCTACTGCAGATCAATGACATCACCTGAAGTATCTGTTGGACATCCCCAAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTTTTTTGATGCATCAGAACTAGAATTTTGATAATTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCCCTTCAAGAATTATTAGACTGATCCAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCCCGATGTTCATTGCTAATATATGCTTTTGTGAGTTAATAAAAAAAAAAAAAAAA]

[-] EMBL CA761621             [ACCCCCCCAAAACCAAAGGTTCTTCTCGTTCCCCAGGGCTCTGGGCCCTAGTGAGCTCCCGCCTCCCCCTTGGCCCCGCAATTCTGCCCGTCAATTCGTAACCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACGGGCGTGCCGCCGCTGCTCTCCTCACGGTGGGTTTTGCCGCCGTCCCCGTGTCCTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTCTACTGCAGATCAATGACATCACCTGAAGTATCTGTTGGACATCCCCAAGACTGCTCTAATCAATCTGAAGAATGGGACACAGAGGAAGAGTGCTTTTTTGATGCATCAGAACTAGAATTTTGATAATTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCCCTTCAAGAATTATTAGACTGATCCAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCCCGATGTTCATTGCTAATATATGCTTTTGTGAGTTAATAAAAAAAAAAAAAAAA]




>consensus_10848#1
ACCCCCCCAAAACCAAAGGTTCTTCTCGTTCCCCAGGGCTCTGGGCCCTAGTGAGCTCCC
GCCTCCCCCTTGGCCCCGCAATTCTGCCCGTCAATTCGTAACCGGTAGTGATGCCGGCGA
AGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGCTCTCCTCTCTGACG
GGCGTGCCGCCGCTGCTCTCCTCACGGTGGGTTTTGCCGCCGTCCCCGTGTCCTGTCCGT
GGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTCTACTGCAGATC
AATGACATCACCTGAAGTATCTGTTGGACATCCCCAAGACTGCTCTAATCAATCTGAAGA
ATGGGACACAGAGGAAGAGTGCTTTTTTGATGCATCAGAACTAGAATTTTGATAATTGTT
GAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCAT
GAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCCCCTTC
AAGAATTATTAGACTGATCCAAGACTTATGTAGAAATTTGTAGTGCATAATCAAATACTG
TTTTTCTATGAATTATGTAAGGACTCCCGATGTTCATTGCTAATATATGCTTTTGTGAGT
TAATAAAAAAAAAAAAAAAA

consensusID : consensus_10848#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [TATTGGTAAATTTTGCATGGCTCTAATGACTCCTTCCCAGTACCGTGTNTTAANCGGTATGCCTGATAAGGGCATTTNCCGATGATTCCNTCTACTGGATTNCCTCNGGTGATTAATCTGATTCAAGCTTTTTATAGGCTTTTTTACGGTGTTGACTAGTGATTTCATTTGAATTTGGAGCTATTCAGTAATAATATTAGCTAATAACTAAATTGTAGCTTGCTGTAATCTTCAAGTGACATTCATTGAATTTTAAGGCAACAATTTCAAGTCCAGTGATACAGTTCAACTCAATTTGATGATTCACTTTGATGTACTAATTTGTTTTGAAGAAACTTTCCTAATATATTATATCATATCTTGTAGATAATTGTAGAATTGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCACGTGGAGCTTGCTTTATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTCACTTCAAGAATTGTTGGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATTAAATATTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCAATGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTTGGGTAAAATAAGTGATTTTGTTGTATTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029615             [TATTGGTAAATTTTGCATGGCTCTAATGACTCCTTCCCAGTACCGTGTNTTAANCGGTATGCCTGATAAGGGCATTTNCCGATGATTCCNTCTACTGGATTNCCTCNGGTGATTAATCTGATTCAAGCTTTTTATAGGCTTTTTTACGGTGTTGACTAGTGATTTCATTTGAATTTGGAGCTATTCAGTAATAATATTAGCTAATAACTAAATTGTAGCTTGCTGTAATCTTCAAGTGACATTCATTGAATTTTAAGGCAACAATTTCAAGTCCAGTGATACAGTTCAACTCAATTTGATGATTCACTTTGATGTACTAATTTGTTTTGAAGAAACTTTCCTAATATATTATATCATATCTTGTAGATAATTGTAGAATTGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCACGTGGAGCTTGCTTTATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTCACTTCAAGAATTGTTGGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATTAAATATTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCAATGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTTGGGTAAAATAAGTGATTTTGTTGTATTAAAAAAAAAAAAAAAAAAA]




>consensus_10848#2
TATTGGTAAATTTTGCATGGCTCTAATGACTCCTTCCCAGTACCGTGTNTTAANCGGTAT
GCCTGATAAGGGCATTTNCCGATGATTCCNTCTACTGGATTNCCTCNGGTGATTAATCTG
ATTCAAGCTTTTTATAGGCTTTTTTACGGTGTTGACTAGTGATTTCATTTGAATTTGGAG
CTATTCAGTAATAATATTAGCTAATAACTAAATTGTAGCTTGCTGTAATCTTCAAGTGAC
ATTCATTGAATTTTAAGGCAACAATTTCAAGTCCAGTGATACAGTTCAACTCAATTTGAT
GATTCACTTTGATGTACTAATTTGTTTTGAAGAAACTTTCCTAATATATTATATCATATC
TTGTAGATAATTGTAGAATTGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCACG
TGGAGCTTGCTTTATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATAT
TGGGCTTGTCACTTCAAGAATTGTTGGACTGATACAAGACTTGTGTAGAAATTTGTAGTG
CATAATTAAATATTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCAATGCTAATA
TATGCTTTTGTGAGTTTGAATTTGGACTTGGGTAAAATAAGTGATTTTGTTGTATTAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_10848#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [TCCTCTCTGACGGCGTNCCGCCGCTGCTCTCTNACGGTGGGTTCGCCGTCGTCCCCGTGTCCTGTCCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGNGGATCCTAGAGCGAGTTTACTGCAGATCAATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCAATCTGAAGAATGGGACNCAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTTGATAATTGTTGAATGGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTCACTTCAAGAATTATTAGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCNCGATGTTCATTGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093912             [TCCTCTCTGACGGCGTNCCGCCGCTGCTCTCTNACGGTGGGTTCGCCGTCGTCCCCGTGTCCTGTCCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGNGGATCCTAGAGCGAGTTTACTGCAGATCAATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCAATCTGAAGAATGGGACNCAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTTGATAATTGTTGAATGGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTCACTTCAAGAATTATTAGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATCAAATACTGTTTTTCTATGAATTATGTAAGGACTCNCGATGTTCATTGCTAATATATGCTTTTGTGAGTTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10848#3
TCCTCTCTGACGGCGTNCCGCCGCTGCTCTCTNACGGTGGGTTCGCCGTCGTCCCCGTGT
CCTGTCCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGNGGATCCTAGAGCGAGTTTA
CTGCAGATCAATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCA
ATCTGAAGAATGGGACNCAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTT
GATAATTGTTGAATGGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCAAGTGGAG
CTTGCTTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGC
TTGTCACTTCAAGAATTATTAGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAA
TCAAATACTGTTTTTCTATGAATTATGTAAGGACTCNCGATGTTCATTGCTAATATATGC
TTTTGTGAGTTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10848#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GCTCTTCTCGTTCCCCATGGCTCTTGCCCTAGTGAGCTCCACGCCTCCACCTCGACGCCGCAACTCTGCTCGTCGATTCGTCGCCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGGCTCTCCTCTCTGACGGGCGTGCCGCCGGCTGCTCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCTTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGCCGTGAGTGCGCGATCGCTACTCTACACTCCAGCGACCTGCCTTCTCCTCTATGCTCTCAATCCTTCCACCAGAAATAGTTCCCTCTGTTTTTTCCATAGGGTGACACATAGGTGTTCGGAGAAATGCCAAGCAGCG]

[+] EMBL AU029614             [GCTCTTCTCGTTCCCCATGGCTCTTGCCCTAGTGAGCTCCACGCCTCCACCTCGACGCCGCAACTCTGCTCGTCGATTCGTCGCCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTCACCTCACCGTTGGTCTTGCCTCCCTTGGCTCTCCTCTCTGACGGGCGTGCCGCCGGCTGCTCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCTTGTCCGTGGGTCGCGTCACCATTGCTCTTCTCGCCGTGAGTGCGCGATCGCTACTCTACACTCCAGCGACCTGCCTTCTCCTCTATGCTCTCAATCCTTCCACCAGAAATAGTTCCCTCTGTTTTTTCCATAGGGTGACACATAGGTGTTCGGAGAAATGCCAAGCAGCG]




>consensus_10848#4
GCTCTTCTCGTTCCCCATGGCTCTTGCCCTAGTGAGCTCCACGCCTCCACCTCGACGCCG
CAACTCTGCTCGTCGATTCGTCGCCGGTAGTGATGCCGGCGAAGGAGCCCGTACATTCTC
ACCTCACCGTTGGTCTTGCCTCCCTTGGCTCTCCTCTCTGACGGGCGTGCCGCCGGCTGC
TCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCTTGTCCGTGGGTCGCGTCACCATT
GCTCTTCTCGCCGTGAGTGCGCGATCGCTACTCTACACTCCAGCGACCTGCCTTCTCCTC
TATGCTCTCAATCCTTCCACCAGAAATAGTTCCCTCTGTTTTTTCCATAGGGTGACACAT
AGGTGTTCGGAGAAATGCCAAGCAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10848#1      -----------------------------------------------------------A 1
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      ACCATACTGTGCGATGGACTTAAATGGGCCAAGCTGCTCTGCCTCTGTCTGAAACTGTGA 60
consensus_10848#3      ------------------------------------------------------------
consensus_10848#2      ------------------------------------------------------------
                                                                                   

consensus_10848#1      CCCCCCCAAAACCAAAGGTTCTTCTCGTTCCCCAGGGCTCTGGGCCCTAGTGAGCTCC-C 60
consensus_10848#4      -----------------GCTCTTCTCGTTCCCCATGGCTCTTG-CCCTAGTGAGCTCCAC 42
consensus_10848#0      ACCACCAAAAACAGAGTGTTCTTCTCGTTCCCCATGGCTCTTGGCCCTAGTGAGCTCCAC 120
consensus_10848#3      ------------------------------------------------------------
consensus_10848#2      ----------------------------TATTGGTAAATTTTG-----CATGGCTCTAAT 27
                                                                                   

consensus_10848#1      GCCTCCCCCTTGGCCCCGCAATTCTGCCCGTCAATTCGTAACCGGTAGTGATGCCGGCGA 120
consensus_10848#4      GCCTCCACCTCGACGCCGCAACTCTGCTCGTCGATTCGTCGCCGGTAGTGATGCCGGCGA 102
consensus_10848#0      GCCTCCACCTCGGCGCCGCAACTCTGCACGTCTATTCGTCGCTGGTAGTGATGCCGACGA 180
consensus_10848#3      ------------------------------------------------------------
consensus_10848#2      GACTCCTTCCCAGTACCGTGTNTTAANCGGTATGCCTGATAAGGGCATT--TNCCGATGA 85
                                                                                   

consensus_10848#1      AGGAGCCCGTACATTCTCACCTCACCGTTGGTCT--TGCCTCCCTTG-CTCTCCTCTCTG 177
consensus_10848#4      AGGAGCCCGTACATTCTCACCTCACCGTTGGTCT--TGCCTCCCTTGGCTCTCCTCTCTG 160
consensus_10848#0      AGGAGCCCGTACATTCTCACCTCACCGTTGGTCT--TGCCTCCCTTG-CTCTCCTCTCTG 237
consensus_10848#3      ---------------------------------------------------TCCTCTCTG 9
consensus_10848#2      TTCCNTCTACTGGATTNCCTCNGGTGATTAATCTGATTCAAGCTTTTTATAGGCTTTTTT 145
                                                                            ** * * 

consensus_10848#1      ACGGGCGTGCCGCCG-CTGCTCTCCTCACGGTGGGTTTTGCCGCCGTCCCCGTGTCCTGT 236
consensus_10848#4      ACGGGCGTGCCGCCGGCTGCTCTCCTCACGGTGGGTTTCGCCGCCGTCCCCGTGTCTTGT 220
consensus_10848#0      ACGGGCGTGCCGCCG-CTGCTCTCCTCACGGTGGGCTTCGCCGTCGTCCCCGTGTCCTGT 296
consensus_10848#3      ACGG-CGTNCCGCCG-CTGCTCTC-TNACGGTGGG-TTCGCCGTCGTCCCCGTGTCCTGT 65
consensus_10848#2      ACGG---TGTTGACTAGTGATTTCAT-----TTGAATTTGGAGCTATTCAGTAATAATAT 197
                       ****   *   * *   ** * ** *     * *  ** *  *   * *     *  * *

consensus_10848#1      CCGTGGGTCGCGTCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTCTACTGCA 296
consensus_10848#4      CCGTGGGTCGCGTCACCATTGCTCTTCTCGCCGTGAGTGCGCGATCGCTACTCTAC---A 277
consensus_10848#0      CCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGAGGATCCTAGAGCGAGTTTACTGCA 356
consensus_10848#3      CCATGGGTCGCATCACCATTGCTCTTCTCGTCGTGNGGATCCTAGAGCGAGTTTACTGCA 125
consensus_10848#2      TAGCTAATAACTAAATTGTAGCTT-----GCTGTAA-TCTTCAAGTGACATTC-ATTGAA 250
                              *  *   *   * ***      *  **       * *  *  * *  *    *

consensus_10848#1      GATCAATGACATCACCTGAAGTATCTGTTGGACATCCCCAAGACTGCTCTAATCAATCTG 356
consensus_10848#4      CTCCAGCGACCTGCCTTCTCCTCTATGCTCTCAATCCTTCCACCAGAAATAGTTCCCTCT 337
consensus_10848#0      GATCAATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCAATCTG 416
consensus_10848#3      GATCAATGACATCACCTGAAGTATCTGTTGGACATCCACAAGACTGCTCTAATCAATCTG 185
consensus_10848#2      TTTTAAGGCAACAATTTCAAGTCCAGTGATACAGTTCAACTCAATTTGATGATTCACTTT 310
                           *  *        *    *            * *            *  *       

consensus_10848#1      AAGAATGGGACACAGAGGAAGAGTGCTTTTTT-GATGCATCAGAACTAGAATTTTGATAA 415
consensus_10848#4      GTTTTTTCCATAGGGTGACACATAGGTGTTCG-GAGAAATGCCAAGCAGCG--------- 387
consensus_10848#0      AAGAATGGGACACAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTTGATAA 476
consensus_10848#3      AAGAATGGGACNCAGAGGAAGAGTGCTGTTTTTGATGCATCAGAACTAGAATTTTGATAA 245
consensus_10848#2      GATGTACTAATTTGTTTTGAAGAAACTTTCCTAATATATTATATCATATCTTGTAGATAA 370
                                *         *      * *          *       *            

consensus_10848#1      TTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGC 475
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      TTGTTGAATGGTTCTTTTATGGAAAACTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGC 536
consensus_10848#3      TTGTTGAATGGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCAAGTGGAGCTTGC 305
consensus_10848#2      TTGTAGAATTGTTCTTTTATGGAAAGCTCAGAAGACTTCCTTTTTTCACGTGGAGCTTGC 430
                                                                                   

consensus_10848#1      TTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCC 535
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      TTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGCC 596
consensus_10848#3      TTCATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTC 365
consensus_10848#2      TTTATGAGTGGCCACCGAAGGCTGCTTCCCTCTATTCTATGGCATTATATTGGGCTTGTC 490
                                                                                   

consensus_10848#1      CCTTCAAGAATTATTAGACTGATCCAAGACTTATGTAGAAATTTGTAGTGCATAATCAAA 595
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      ACTTCAAGAATTATTAGACTGATACAAGACTTATGTAGAAATTTGTAGTGCATAATCAAA 656
consensus_10848#3      ACTTCAAGAATTATTAGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATCAAA 425
consensus_10848#2      ACTTCAAGAATTGTTGGACTGATACAAGACTTGTGTAGAAATTTGTAGTGCATAATTAAA 550
                                                                                   

consensus_10848#1      TACTGTTTTTCTATGAATTATGTAAGGACTCCCGATGTTCATTGCTAATATATGCTTTTG 655
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      TACTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCATTGCTAATATATGCTTTTG 716
consensus_10848#3      TACTGTTTTTCTATGAATTATGTAAGGACTCNCGATGTTCATTGCTAATATATGCTTTTG 485
consensus_10848#2      TATTGTTTTTCTATGAATTATGTAAGGACTCACGATGTTCAATGCTAATATATGCTTTTG 610
                                                                                   

consensus_10848#1      TGAGTTAATAAAAAAAAAAAAAAAA----------------------------------- 680
consensus_10848#4      ------------------------------------------------------------
consensus_10848#0      TGAGTTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCTGAACTCAC 776
consensus_10848#3      TGAGTTTGAATTTGGACTCGGGTAAAATAAGTGATTTTGTTGTATTGTATCAAAAAAAAA 545
consensus_10848#2      TGAGTTTGAATTTGGACTTGGGTAAAATAAGTGATTTTGTTGTATTAAAAAAAAAAAAAA 670
                                                                                   

consensus_10848#1      ------------------------------
consensus_10848#4      ------------------------------
consensus_10848#0      TTTCTAGCATATGAGGTTGATTTACATGAA 806
consensus_10848#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 575
consensus_10848#2      AAAAA------------------------- 675