These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1263 fasta sequence [AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTATTAA] [+] EMBL CB646543 [AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGG AGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGG ] [+] EMBL AK103084 [ GGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCA ] [+] EMBL CB646893 [ CGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAAGAGGCTGAGGCCAAGCGCTT ] [+] EMBL AU172982 [ CGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCAT ] [-] EMBL CB646894 [ TGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTTTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTGTGCAAGTTTAAGTTAACCATCACCGTTTTATTAA] [-] EMBL CB646544 [ AGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATA GGGATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTA ] [-] EMBL BI306075 [ ACAACTCCATCAAGCTTTCTCCCCGGCGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAG G AGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACGGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGT ] consensusID : consensus_10852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [TCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCNTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075786 [TCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCNTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10852#0 AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGG 60 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 CAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCAC 120 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGAC 180 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGC 240 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCAT 300 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGC 360 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAG 420 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 CACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGT 480 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 CGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCG 540 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 TGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCT 600 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 GGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGC 660 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 CTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTT 720 consensus_10852#1 -----------------------------------------------TCGAGGCGTTCTT 13 ************* consensus_10852#0 CGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGT 780 consensus_10852#1 CGCGGCGGCCGAGGAGGCTGAGGCCAAGCN-TTCGCCGCCAAGTACAACTTCGACGTCGT 72 ***************************** ***************************** consensus_10852#0 TCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAG 840 consensus_10852#1 TCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAG 132 ************************************************************ consensus_10852#0 CTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTAC-AGGGGGGCGCCGTG 899 consensus_10852#1 CTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTG 192 ************************************** **** ************** consensus_10852#0 TAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAA 959 consensus_10852#1 TAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAA 252 ************************************************************ consensus_10852#0 GGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCAC 1019 consensus_10852#1 GGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCAC 312 ************************************************************ consensus_10852#0 CGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGA 1079 consensus_10852#1 CGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGA 372 ************************************************************ consensus_10852#0 AAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGAT 1139 consensus_10852#1 AAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGAT 432 ************************************************************ consensus_10852#0 AGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATT 1199 consensus_10852#1 AGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA------------------ 474 ******************* ** * ** * consensus_10852#0 AAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTA 1259 consensus_10852#1 ------------------------------------------------------------ consensus_10852#0 TTAA 1263 consensus_10852#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||