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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1263 fasta sequence
[AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTATTAA]
[+] EMBL CB646543 [AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGG AGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGG ]
[+] EMBL AK103084 [ GGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCA ]
[+] EMBL CB646893 [ CGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGGCAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCACGCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAAGAGGCTGAGGCCAAGCGCTT ]
[+] EMBL AU172982 [ CGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGACGAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGCGGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCATGCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGCGGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAGCACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGTCGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCGTGACCGCGAGAGGAGAGAAACAACTCCAT ]
[-] EMBL CB646894 [ TGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTTTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTGTGCAAGTTTAAGTTAACCATCACCGTTTTATTAA]
[-] EMBL CB646544 [ AGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATA GGGATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTA ]
[-] EMBL BI306075 [ ACAACTCCATCAAGCTTTCTCCCCGGCGAGGTGAGCGATCTGGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGCCTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAG G AGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACGGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAGCAGCAGCAGCTGT ]
consensusID : consensus_10852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[TCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCNTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075786 [TCGAGGCGTTCTTCGCGGCGGCCGAGGAGGCTGAGGCCAAGCNTTCGCCGCCAAGTACAACTTCGACGTCGTTCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGATAGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10852#0 AAACGGCCAAAGAAGGCGACGGCGGCGGCGCAGGAGGGGCGCGCACGCGGCGCAGATGGG 60
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 CAAGTACATGAGGAAGTTCAGGGGGGCCACGGGGGAGGAGTTGGCCGCCATGGAGGTCAC 120
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GCAGGTGGTTGGCGTCCGGACGAGGTCGAGGTCGGCAGCGGCGGCGGGCGCGACGACGAC 180
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GAAGGTGAAGGCGGCGTCGGCGGCGTCCACCAGGAGGAGGAAGGCGCTGCTGCCGACGGC 240
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GGTCGTGGGGACTACTCGCCGTGACGGCGGGAGCTGCTACCTCCAGCTGAGGAGCCGCAT 300
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GCTGTTCATGGCCCCGCCGAGGCCGGCGCCGGCCGCGAGGGCTCCGGTTGTAGCGGAGGC 360
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GGCGGGTTCCGGGAACGGAGCGGCGGCGCATGCGGCGGCTGGCCTCTCGCGTTGCTCCAG 420
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 CACGGCGTCGTCCGTGGACGCGGCGGCTCAGGACAGGAGCCTCGCGTGCCGCTCCGACGT 480
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 CGCGGAGGCAGGCAGCGAGCATGTCCCGGAGGGCTCCGCGAGCGACTCGGCGAGCGGCCG 540
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 TGACCGCGAGAGGAGAGAAACAACTCCATCAAGCTTTCTCCCCGGAGAGGTGAGCGATCT 600
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 GGAGTCGGATCTGGCTGGAGGACAGAAGCGCAGCCGTCCACTACCTTCTGCGGCAACAGC 660
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 CTCAGCACAGCAAGCCACGCGGCCGAAGATTCCGCCGGCCGCCGAGATCGAGGCGTTCTT 720
consensus_10852#1 -----------------------------------------------TCGAGGCGTTCTT 13
*************
consensus_10852#0 CGCGGCGGCCGAGGAGGCTGAGGCCAAGCGCTTCGCCGCCAAGTACAACTTCGACGTCGT 780
consensus_10852#1 CGCGGCGGCCGAGGAGGCTGAGGCCAAGCN-TTCGCCGCCAAGTACAACTTCGACGTCGT 72
***************************** *****************************
consensus_10852#0 TCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAG 840
consensus_10852#1 TCGCGGCGTGCCCCTCGACGCCGGTCGGTTCGAGTGGACTCCGGTGGTCAGCAGCCGAAG 132
************************************************************
consensus_10852#0 CTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTAC-AGGGGGGCGCCGTG 899
consensus_10852#1 CTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGNNGGTANCAGGGGGGCGCCGTG 192
************************************** **** **************
consensus_10852#0 TAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAA 959
consensus_10852#1 TAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAA 252
************************************************************
consensus_10852#0 GGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCAC 1019
consensus_10852#1 GGGAATAAACTGGAAAAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCAC 312
************************************************************
consensus_10852#0 CGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGA 1079
consensus_10852#1 CGATTCGACTCTTTTTTCTTTCACATTTTCTTTGCATTTTTACTCTTACTGTGTACTAGA 372
************************************************************
consensus_10852#0 AAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGAT 1139
consensus_10852#1 AAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATCTCGAT 432
************************************************************
consensus_10852#0 AGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATT 1199
consensus_10852#1 AGGAATAGATATATTATCCNCTAAAAAAAAAAAAAAAAAAAA------------------ 474
******************* ** * ** *
consensus_10852#0 AAATTTACTGTACAGCAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGTTTTA 1259
consensus_10852#1 ------------------------------------------------------------
consensus_10852#0 TTAA 1263
consensus_10852#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||