|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 766 fasta sequence
[GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCCCGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCG---TTTTCCCGC-GCGACCAGC-TCGACCA--TCC--CCGGCAA-CC-AGACGGTTCGGG-CCGGGA-CCCCGAG-CCAGCCC-TCAGA-CCAA-TCCTT-TTCCCGAAG-TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC-GTGGACGGTACTCGGTCCTCCGGATTTTCAA-GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC-GGCCGCTGGACC-CTACCTCCGGCTGAACCGTTTCCAGGGTT-GC-GGCCG-TTAAGCAGAAAAGATAACTCTTCCCGAGGC-CCCC-GCC-GGC-GTCTCC-GGACTTCCTAACGTCGCC-GTCAACC-GCCAC-GTCCC-GGCTCGGGAAATCTTAACCCGATTCCCTTTC-GGGGCAC-GC-GC-GT-GTC-GCGCTCTCTGCC-GGGGTTACCCC-GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC-GCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCT-TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT]
[+] EMBL BI799077 [GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCCCGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCG TTTTCCCGC GCGACCAGC TCGACCA TCC CCGGCAA CC AGACGGTTCGGG CCGGGACCCCCGAG CCAGCCC TCAGA CCAA TCCTT TTCCCGAAG TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACCAGCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGG ]
[+] EMBL BI807263 [ CGAGGGCC GTCCCGTC GT CCCCG C GCACGCGCG CCG CTCT CCGC GCGA CAGC TCGACCAG TCC NCCGC A CC GACGGTTC GG CC GGA CCCCGAGCCCAGCCC TCAGA CCAA TCCTT TTCCCGAAG TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGTCCAGA GCTGTTCACCTTGGAGACCTGAT CGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGAC CCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTT GC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCtggg ]
[+] EMBL BI799868 [ tcgtCCCCGCCCGGCATCCGCGCCCGGCTTTTTGCCGCGGCGGACAGCTTCGACAG TCCCGCCGCCAA CC CGACGGTTCGGGCCCGGGA CCCCGAC CCACCCCTTCAGACCCAA TCCTT TTCCCGAAG TTACGGATCCG TTTGCCGACTT CCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGG ]
[+] EMBL BI794947 [ cgtCCCCGCC GC ACCGCGCCGC TCTCCCCGC GCGACCAGC TCGACCAAGTCC CCGCCAACCC TGACGGTTCGGGTCCGGGACCCCCGAGCCCAGCCC TCAGA CCAATTCCTTGTTCCCGAAGTTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCA TGGCCAGA GCTGTTCACCTTGGAGACCTGAT CGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCC CCGGGGGCGCACCGGACACCGCGCGACGT CGGTGCTCTTCC GCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTT GC GGCCG TTAA CAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCA ]
[+] EMBL BI806686 [ ctccGCAG CCGANACGGTTCGGGCCCGGGA CCCCGAG CCAGCCC TCAGA CCAA TCCTT T CCGAA TTAC GATCC TTT CCGACTTCCCTTGCCTACATTGTTCCATT GCCAGA GCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGGTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCA GGTT GC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGCAGTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTC GCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGAC GCC GCTCCGCCC GGCTCGCG CCCTGGTTTTG ]
[+] EMBL BI798987 [ gGGC CCGGAA CCCCGAG CCAGCCT TCAGA CCAA T CTT TTCCCGAAG TTACGGATCCG TTTGCCGACTT CCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCAGGCCGCTGGACCACTACCTCCGGCTGAACCGTTTCCAGGGTTGGC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGCACCCCAGCCAGGC GTCTCCAGGACTTCCTAACGTCGCCAGTCAACCAGCCACAGTCCCAGGCTCGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGT GTCAGCGCTCTCTGCCAGGGGTTACCCCAGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGG ]
[+] EMBL BI796013 [ GCTGGACC CTACCTC GCTGAACCGTTTGCA GGTT GCGGGCCGTTTAAGCAG AAAGATAACTCTTCCCGAGG CCCC GCC GGC GTCTCC GGACTTCCTAACGTCTCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCAGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCT TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT]
consensusID : consensus_10855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCATTGCCAGAGCTGTTCACCTTGGAGACCTGATCGGTTATGAGTACGACCGGGCGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGGCACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCAANC]
[-] EMBL BI799134 [GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCATTGCCAGAGCTGTTCACCTTGGAGACCTGATCGGTTATGAGTACGACCGGGCGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGGCACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCAANC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10855#0 GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCC 60
consensus_10855#1 ------------------------------------------------------------
consensus_10855#0 CGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCGTTTTCCCGCGCGACCA 120
consensus_10855#1 ------------------------------------------------------------
consensus_10855#0 GCTCGACCATCCCCGGCAACCAGACGGTTCGGGCCGGGACCCCGAGCCAGCCCTCAGACC 180
consensus_10855#1 ------------------------------------------------------------
consensus_10855#0 AATCCTTTTCCCGAAGTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCAT 240
consensus_10855#1 ------------------GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCAT 42
* * *** **********************
consensus_10855#0 TGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGAC 300
consensus_10855#1 TG-CCAGAG-CTGTTCACCTTGGAGACCTGAT-CGGTTATGAGTACGACCGGGCGTGGAC 99
** ****** ********************** ***************************
consensus_10855#0 GGTACTCGGTCCTCCGGATTTTCAAGG-CCGCCGGGGGC-GCACCGGACACCGCGCGACG 358
consensus_10855#1 GGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACG 159
*************************** *********** ********************
consensus_10855#0 TGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGC--G 416
consensus_10855#1 TGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGG 219
******************************************************** *
consensus_10855#0 GCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTA 476
consensus_10855#1 GCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTA 279
************************************************************
consensus_10855#0 ACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGG 536
consensus_10855#1 ACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGG 339
************************************************************
consensus_10855#0 CACGCGCGTG-TCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCAT 595
consensus_10855#1 CACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCAT 399
********** *************************************************
consensus_10855#0 GTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAA 655
consensus_10855#1 GTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAA 459
************************************************************
consensus_10855#0 TATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGG 715
consensus_10855#1 TATTTGCTACTACCACCAAGATCTGCACCGACG-CCGCTCCGCCCGGGCTCGCGCCCCGG 518
********************************* **************************
consensus_10855#0 GTTTTGCGCGCCGCT-TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT 766
consensus_10855#1 GTTTTGCGCGCCGCTCTAGAGATCCAANC----------------------- 547
*************** *********** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||