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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2382 fasta sequence
[AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTTCCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT-AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCATGCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACCGTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTATAATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCCCAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCTAGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACATCTAGCTCGGGTATCCTATCTATTAATG]
[+] EMBL AK102977 [AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTTCCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTT CAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGGCAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCATGCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACCGTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTATAATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCCCAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCTAGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACATCTAGCTCGGGTATCCTATCTATTAATG]
[+] EMBL AK101898 [ GAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAAGGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTTTTCTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATC CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCCTGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAAC ]
[+] EMBL AK064015 [ GGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATGGAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTGAGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAGTTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCCAGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATAAATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAGGAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAGAAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAATGATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGAGAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGTACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGATGATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGTATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAAGCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGT AAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAAC ]
[+] EMBL CB096881 [ ATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTCTAATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAAC AACGAGCGGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTTTGTTGTGATGGATGATTCATTGATTCCTGCCAATTCCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACAGTTTCGGTGAAAaaaaaaa ]
[-] EMBL BI306050 [ ttCTGATGTTGAGCATCTTTCTGATTGTGCCATTTCTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAAC AACGAGCCGGTAATTACAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCACCAA ]
consensusID : consensus_10858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence
[CTCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGAGGCGAGGCGAGGCGAGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCGAGATTGAGCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGAGGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTCGAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGCAATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGTACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCCTCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATATTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTCTTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTCTTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTCCTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA]
[+] EMBL CA758589 [CTCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGAGGCGAGGCGAGGCGAGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGAAACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATCCGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCGAGATTGAGCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGAGGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTCGAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGCAATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGTACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCCTCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATATTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTCTTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTCTTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTCCTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA]
consensusID : consensus_10858#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[TATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTTTGATTGTGCCATTTTTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTTCAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCCCCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCCCCAAGGCAATTGTAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACAGTTTCGGTGAAAAAAAAAAAACTTAAAAGGA]
[-] EMBL CB668896 [TATGATATGCCAAATCACTTAGACTGGAGGGTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTCAGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTCATATACAAGGGCCGCAATACAACACTCAGTTTGGTCGTTCCATTCGAATAACCCTTTTACTGGTGTTGAGCATCTTTTTGATTGTGCCATTTTTCGTGTACTCAGCTTGACAATGCTCATATTGGTGGCTGCTGGTGAAGGAAAAAGTATCCGTTATTGTACTTGCAAACCGTGGTTGGTGTTATTCACATGCTCAGATGAAACAAACGAGCGGGTAATTTCAGATGGAGCTGTACATAGGAGGGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGGAGAGGAAAAAGAAACAAAACGGGAACGACTTCATTTGTGCAATGCAAAATTTCCAAGATCAGAAAACGTGTTGTCCCCAGCAGAAAATCATCCTGAGATGGATCCATAGTTAATGGCTATTTGGAGTCTGTTGTGATGGATGATTCATTGATTCCTGCCAATTTTTCCTTGCTGCTGTACCCTCCCCAAGGCAATTGTAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACAGTTTCGGTGAAAAAAAAAAAACTTAAAAGGA]
consensusID : consensus_10858#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GAAGTGTTGGGTGGACTTGCAGTATACGATGGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTGACCTGGGTGTTGAGCTATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCTTGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATCCGTTATTGTAGCTTGCGAAGCCGTGTTTTGGTGTTATTCACATGCTCACGATGAGAACCCATAGCGATGTCGGGTTAATTTACATGATTGGAGCTGTATCATAGGAGGGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGAAACCAAACGTGGAACGACTTCATTTGTGCAATGCAAATTTCCAGAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTTAATGGCTATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA]
[+] EMBL BI805405 [GAAGTGTTGGGTGGACTTGCAGTATACGATGGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTGACCTGGGTGTTGAGCTATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCTTGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATCCGTTATTGTAGCTTGCGAAGCCGTGTTTTGGTGTTATTCACATGCTCACGATGAGAACCCATAGCGATGTCGGGTTAATTTACATGATTGGAGCTGTATCATAGGAGGGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGAAACCAAACGTGGAACGACTTCATTTGTGCAATGCAAATTTCCAGAGATCAGAAAACGTGTTGTCACCAGCAGAAAATCATCCTGAGATGGATCCATAGTTTAATGGCTATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTGCTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAATGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AGAGAGAGAGAAACAACACCACCACCACCATCACCAACGACACCGAGACGGAAGGAAGAA 60
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GGAGAAGAAGGCGAGAGAGAGAGTAGTTCACTTCCCTCCTCTCCTCTCCCTCTCTTCCCA 120
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 CTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGAGGCGACGGCAGCGGA 180
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GGAGGAGGAGGAGGNGGCGGCGGCAGCCGAACCCCCACAAAAACGCCGCCCCTTNAACTT 240
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 CCTTCCTTGCCTTGCACAGCCTCATCCTCGATCCGTCGCGCGTTCGTCGGGCGATATCCC 300
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGTTTCCCCCGCGTGCGAGATTGAGCC 360
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 TGGAAGCCCATTCAGCGGCGGGGTTGGGGCGGCAGGCGGCTGTGAGGTTCTTGATTTGAT 420
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 CTGTGGTTGTTGTTGAGGTTGTGGTTGGGCGCCATGGCGGCGGCGGGAGGGCTGGAGCAG 480
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 TGGCAGAAGGACGGGTTCTTCCAGGCCGCCGAGGAGGTGCAGGAGTCGGCGGACTTGATG 540
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GAATCTATTTATAGAACTTGGATGCGGGAACGCGATAGCGGAGCTAATTTAGAGGAGCTG 600
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AGCGATTTGCAAAGGGAGCTGAAGACAGCATTAGGAACTGCAAAGTGGCAGTTGGAGCAG 660
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 TTTGAGAGAGCTATAAGCATGAGCAATGATAAGTATTCTTTGGAAGAGGGTACATTGGCC 720
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AGGCGTCGGCAGTTCGTTGTAGCAATGGAGGACCAGATTTCTCAAGTAGAGAAACAAATA 780
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AATGATTACTCGATTGACAATGATAGGCGAGGGCTCAACTGGGTAAAGTTAGATGATGAG 840
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GAACGAGATGATCTTGTGGCTTTCCTTTCAGCACCTGCACAGTTATCTCAAGATACAAAG 900
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AAAAGAGACAACACTTACCATAGTCCATCAAAACAAAAGAATGCGTTGATTGGCGCGAAT 960
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GATCCCAGGGACATGGCTGCAATCAGTAAAGACCGACATAAAACTGAAGCATTATGCAGA 1020
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GAAATTTCAAATGGTCAGAGTGAAGCTTGTTGTCTAGCCGAGCAGTTAAATGGTCACAGT 1080
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 ACAAGCCCGAGTTCTGGTGGTGAACACTGGAAGATCGATATTTCTGATGATAAAGACGAT 1140
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GATAGAAAATTGTCCCCTAACAAGGTCGAGGCATCAAGTCAGGCAACTGCATTTTCTGGT 1200
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 ATCATGAAAACCACCGAATCTTTCACAAGAGTAAGATGGTTGAGGAATAGCTTGTGGAAA 1260
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------TATGATATGCCAAATCACTTAGACTGGAGG 30
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GCCAAGAGTGATGAACATCTTCCGTTAAGATATGATATGCCAAATCACTTAGACTGGAGG 1320
consensus_10858#1 -----------------------------------------------------------C 1
consensus_10858#2 GTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTC 90
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GTTATAACCTTATTAGCACAGAGGTTTAACGGGCTTACTGAAAGAAGCAGGAGTTGTTTC 1380
consensus_10858#1 TCTTCTCTCTTCCCACTCTCACGTCTCCTCTCTTCCCCTCCGCGAAGCAACGGGGGGCGA 61
consensus_10858#2 AGCGGTTGGAAGGAAAACTTTAGAGTATCTGGAAGGATGGGTGGACTTC--ATATACAA- 147
consensus_10858#3 ------------------------------GAAGTGTTGGGTGGACTTGCAGTATACGAT 30
consensus_10858#0 AGCGGTTGGAAGGAAAACTCTAGAGTATCTGGAAGGATGGGTGGACTTC--ATATACAA- 1437
consensus_10858#1 GGCGAGGCGAGGCGAGGCG--AGGGCAGCGGAGGAGGAGGAGGAGGCGGCGGCAGCCGA- 118
* * ** * * * *
consensus_10858#2 GGGCCGCAATAC--AACACTCAGT-TTGGT--CGTTCCAT--TCGAATA-ACCCTTTT-- 197
consensus_10858#3 GGGCCTCTATGCCTACTGCTCCGTGTTGGTGCGGTTCCATGTCTGAGTGTACCCTTGTTG 90
consensus_10858#0 GGGCCGCAATAC--AACACTCAGT-TTGGT--CGTTCCAT--TCGAATA-ACCCTTTT-- 1487
consensus_10858#1 AACCCCAAGAAAACGCCGCCCCTTGTTTCTTTCTTGCCTTGCACAGCCTCCTCCTCGATC 178
** * * * ** * * ** * ***
consensus_10858#2 ACT--GGTGTT----GAGC---ATCTTTTTGA-TTGTGCCAT-TTTTCGTGTACTCAGCT 246
consensus_10858#3 ACCTGGGTGTT----GAGCT--ATCTTTCTGAGTTGTGCCGTGTTCTCGTGTACTCAGCT 144
consensus_10858#0 ACT--GGTGTT----GAGC---ATCTTTCTGA-TTGTGCCAT-TTCTCGTGTACTCAGCT 1536
consensus_10858#1 CGTCGCGCGTTCGTCGGGCGAGATCCCTCCTCCTCCTCCGGTTTCCCCGCGTGCG-AGAT 237
* *** * ** *** * * * * * * ** ** * ** *
consensus_10858#2 TGA-CAATGC-TCATAT-TGGTGGCT--GCTGGTGAAGGAAA--AAGTATC----CGTTA 295
consensus_10858#3 TGTTCGATGCGTCATATGTGGTGGTCTGGCTGGTGAAGGGGAGTAAGTATC----CGTTA 200
consensus_10858#0 TGA-CAATGC-TCATAT-TGGTGGCT--GCTGGTGAAGGAAA--AAGTATC----CGTTA 1585
consensus_10858#1 TGA--GCCCCGTTTTCGGTGGAAGCCCAACCAGCCGCGGGGTTGGGGTTGCGAGGCGAGA 295
** * * * *** * * * ** ** * ** *
consensus_10858#2 TTGTA-CT--TGC-AAAC-CGTGGTT-GGT-----GTTATTCACATGCTCA-GATGAAA- 342
consensus_10858#3 TTGTAGCT--TGCGAAGC-CGTGTTTTGGT-----GTTATTCACATGCTCACGATGAGAA 252
consensus_10858#0 TTGTA-CT--TGC-AAAC-CGTGGTT-GGT-----GTTATTCACATGCTCA-GATGAAA- 1632
consensus_10858#1 GGGCGGCTGGTGTGAGGTTCTTGATTTGATCTGTGGTTGTTGTTGTGGTGGTGGTTGGGC 355
* ** ** * * ** ** * * *** ** ** * * *
consensus_10858#2 --CA-AACGAG--CGGGTAATTTCAGATG-------------GAGCTGTA-CATA-GGAG 382
consensus_10858#3 CCCATAGCGATGTCGGGTTAATTTACATGATTG---------GAGCTGTATCATA-GGAG 302
consensus_10858#0 --CA-AACGAG--CGGGTAATTACAGATG-------------GAGCTGTA-CATA-GGAG 1672
consensus_10858#1 GCCATGGCGGCGGCGGGAGGGCTGGAGCAGTGGCAGAAGGACGGGTTCTATCATGCGGTC 415
** ** **** * * * ** *** **
consensus_10858#2 GGGA---AAAAGAAACAAAAC----GGGAAC-GACTTCATTTGTGGAGAG--GAAAAAGA 432
consensus_10858#3 GGGTTATATAAGAAACCTAACATCGGGATACAGACTTCATTTGTGGAGATGCGAAAAAGA 362
consensus_10858#0 GGGA---AAAAGAAACAAAAC----GGGAAC-GACTTCATTTGTGGAGAG--GAAAAAGA 1722
consensus_10858#1 GAGGAGGAGCAGGAGTTCATCGTCTGAAGGAATCTTTAATTAATCATTTTTACTAAATGC 475
* * * ** * * * * ** *** * *** *
consensus_10858#2 AA----------CAAAACG-GGAACGACTTCATTTGTGCAATGCAAAA-TTTCCAAGATC 480
consensus_10858#3 AA----------CCAAACGTGGAACGACTTCATTTGTGCAATGCAAAT-TTCCAGAGATC 411
consensus_10858#0 AA----------CAAAACG-GGAACGACTTCATTTGTGCAATGCAAAA-TTTCCAAGATC 1770
consensus_10858#1 AATCTCTTACTTCTACTCCGGATATAATATTTTTTTTATTATATTGATACCCCCGTCAGT 535
** * * * * * * * *** * ** * * *
consensus_10858#2 AGAAAACGTGTTGTCCCCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-T-AATGGC 537
consensus_10858#3 AGAAAACGTGTTGTCACCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-TTAATGGC 469
consensus_10858#0 AGAAAACGTGTTGTCACCA-GCAGAAAATCATCCTGAGATGGATCCATAGT-T-AATGGC 1827
consensus_10858#1 ACCACTCATTTTTTCCCCTTACTTAAAGATCTTTAGCTTTCTCTTCACAGGATGTATTCC 595
* * * * ** ** ** * *** * * * * ** ** * ** *
consensus_10858#2 TATTTGGAGTCTG-TTGTGATGG-ATGATTCAT-TGATTCCTGCCAATTTTTCCTTGCTG 594
consensus_10858#3 TATTTGGAGTCTGGTTGTGATGGGATGATTCATGTGATTCCTGCCAAGTTCTCCTTGCTG 529
consensus_10858#0 TATTTGGAGTCTG-TTGTGATGG-ATGATTCAT-TGATTCCTGCCAATTTCTCCTTGCTG 1884
consensus_10858#1 TCTCTCTTATACCTCTCTATTCCATCTCCTTATCCTATCATGCTAAATTTTTTATTTATA 655
* * * * * * * * ** ** ** ** * ** *
consensus_10858#2 CTGTACCCTCCCCAAGGCAATTGTAAAAAAAAA--ATGTAGAGCTGTTGGGAAA------ 646
consensus_10858#3 CTGTACCCTCACCAAGGCAATTGTAAAAAAAAAAAATGTAGAGCTGTTGGGAAA------ 583
consensus_10858#0 CTGTACCCTCACCAAGGCAATTGTAAAAAAAAA--ATGTAGAGCTGTTGGGAAA------ 1936
consensus_10858#1 TTGCTCTCTTATCATCCCCATTTCCTTTCTAATATATATGCTGTTATTTTCCTCCTTTTC 715
** * ** ** * *** ** ** * * * **
consensus_10858#2 -TGGATTTGAACGACTATTGTGAATGATTTATTCAATTAGGGGAAGTGAACA-GTTTCGG 704
consensus_10858#3 -TGGATTTGAACGACTATTGTGAATGATTTAAAAAAAAA--------------------- 621
consensus_10858#0 -TGGATTTGAACGACTATTGTGAATGATTTATACAATTTGTGGAAGTGAACA-GTTTCGG 1994
consensus_10858#1 TTTTACTTATTCTACCTTTGCCTATCTCTCCCCCACTCTACTCTCCTAATCATATTATTC 775
* * ** * ** *** ** * *
consensus_10858#2 TGAAAAAAAAAAAACTTAAAAGGA------------------------------------ 728
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 TGAAATGAACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCAGAAGCAT 2054
consensus_10858#1 TTTAATCGTAAGTACCCACATCTACCCTTACTTTCTAACTCACATAATATAATCAATTTC 835
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GCGAGATTCTTTGTCCACAGGTGATTCTGTAACACCTTGTTCCCCCCTAATTCTTAAACC 2114
consensus_10858#1 CTACTATATATCAATAAACAGTGACATACGGACCTTGGTTTGATTATGTTA--------- 886
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 GTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCATTAGCAGTAGTAT 2174
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCC 2234
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 CAGCTTGTGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCT 2294
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ------------------------------------------------------------
consensus_10858#3 ------------------------------------------------------------
consensus_10858#0 AGTTGAGGCAGAAAAAGAACACACTTGTAGATCAGAGATGACAATGTATCGGATAGTACA 2354
consensus_10858#1 ------------------------------------------------------------
consensus_10858#2 ----------------------------
consensus_10858#3 ----------------------------
consensus_10858#0 TCTAGCTCGGGTATCCTATCTATTAATG 2382
consensus_10858#1 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||