These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1452 fasta sequence [AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGCAAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAGCTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGAATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCTTAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAGTCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATCATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAAGGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTTGTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA-GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA-CAGTTCCCA-GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT-CCCTG-GCAAAGCGTTGGATTTTTGGACA-TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT-TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTATTTTCAAAAAAGA] [+] EMBL AK059357 [AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGCAAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAGCTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGAATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCTTAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAGTCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATCATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAAGGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTTGTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGCATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTC ] [-] EMBL CB660783 [ ATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTGGGGTATATGTGATGATTG ] [-] EMBL CB670527 [ CAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAAAGGGATATTATGGATAAAGTTAGTGTTTTCGTTTA ] [-] EMBL CB683290 [ ATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTTTTTTCAAAAAAGA] [-] EMBL CB683340 [ TTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTTTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATGTTATGGATAAAGTTAGTGTTTTCGTTTTTTTTCAAAAAggg] [+] EMBL BI812957 [ ACTAACAGGCTATCTTCTTGATAC ACTCATTCTTGGAGTATATCACTTTTC CACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTA CATTTGCCA CAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGC AATAGTATATACCAGTTCCCACGAGGGGATCCGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTGCGC AAGCGTTGGATTTTTGGACACTTGGACCGGAGAATACAGCTCATTGGATATT GCCAATTTTTGGCCCATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCTCTGACCATGTATTTAGTGAATTCTTGCCCGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTAaaaa ] [+] EMBL BI812961 [ ACA GCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTC CACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCACCCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CCGTTCCCACGAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTTCCCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATT GCAA TTTTGGCCCATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCC GTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTAaaaa ] consensusID : consensus_10864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCATCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGGACGCTTCTCCAGGGCGCCCGC] [-] EMBL CB660782 [CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCATCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGGACGCTTCTCCAGGGCGCCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10864#0 AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGC 60 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 AAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAG 120 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 CTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGA 180 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 ATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCT 240 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 TAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAG 300 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 TCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATC 360 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 ATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAA 420 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 GGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTT 480 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 GTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATG 540 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 GGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGC 600 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 AGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAAT 660 consensus_10864#1 ---CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAAT 57 ************************* ******************************* consensus_10864#0 TGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACC 720 consensus_10864#1 TGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACC 117 ************************************************************ consensus_10864#0 GTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGG 780 consensus_10864#1 GTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGG 177 ************************************************************ consensus_10864#0 TCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCAC 840 consensus_10864#1 TCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCAC 237 ************************************************************ consensus_10864#0 AAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGA 900 consensus_10864#1 AAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCA 297 ******************************************************* * consensus_10864#0 TA--CAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACG 958 consensus_10864#1 TCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGG-ACGCTTCTCCAGGGCG 356 * * * *** ** * *** * ** ** * ** * * * ** consensus_10864#0 GGTACTGCTGTCTGGCTAGCATTTGCCAGCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAA 1018 consensus_10864#1 CCCGC------------------------------------------------------- 361 * consensus_10864#0 CCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATACAGTTCCCAGAGGGGA 1078 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 TCAGTTCAGGAAGAATTTTGTCAGATGTAGTTTCCCTGGCAAAGCGTTGGATTTTTGGAC 1138 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 ATTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAG 1198 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 GCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGA 1258 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 GTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTAT 1318 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 CATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCTTGA 1378 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 CCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTT 1438 consensus_10864#1 ------------------------------------------------------------ consensus_10864#0 ATTTTCAAAAAAGA 1452 consensus_10864#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||