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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1493 fasta sequence
[CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCGAGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCTGCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCGGTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACCTACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAACGGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATCCCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTCGTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG-TACAGAACAAGGGATGCC-CGTCAGTGCCAC-TGTGCA-A-TGGAACGCTGAAGCTTGGTGAGACGAACGGCA-CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG-CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATGTTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT]
[+] EMBL AK073032 [CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCGAGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCTGCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCGGTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACCTACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAACGGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATCCCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTCGTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG TACAGAACAAGGGATGCC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATGTTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT]
[+] EMBL CF312331 [ GCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG TACAGAACAAGGGATGCCNCGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAG ]
[+] EMBL AU057312 [ CACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAGTTACAGAACAAGGGATGCC CGTC ]
[-] EMBL CF312332 [ TGCC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCACCCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAGCCCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTAaaaaaaa ]
[-] EMBL CA305767 [ CC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCA ]
[+] EMBL BI813401 [ GTGCCCCGTGCGCACAGTGGAACGCTGAAGCTTGGTGAGACGAAC GCA CC GTTCCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCCCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTcccaaaaaa ]
consensusID : consensus_10865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 448 fasta sequence
[ACAGTTCATCGCTCATCATACAANCCAGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAAAA]
[+] EMBL AU057313 [ACAGTTCATCGCTCATCATACAANCCAGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAAAA]
[+] EMBL AT003770 [ CCTTGCAACTATTCAGGCACCAGCCTGCCAGAGAGGA GATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTT TTAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10865#0 CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCG 60
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 AGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCT 120
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 GCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCG 180
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 GTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACC 240
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 TACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAAC 300
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 GGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATC 360
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 CCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTC 420
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 GTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACC 480
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 TACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAG 540
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 ACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCAC 600
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 CTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTG 660
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 ACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGA 720
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 CAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGAT 780
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 CACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGC 840
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 TGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAGTACAGAACAAGGGATGC 900
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 CCGTCAGTGCCACTGTGCAATGGAACGCTGAAGCTTGGTGAGACGAACGGCACCGGTTGC 960
consensus_10865#1 ------------------------------------------------------------
consensus_10865#0 GGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACC 1020
consensus_10865#1 ----------------------------------ACAGTTCATCGCTCATCATACAANCC 26
*********************** **
consensus_10865#0 AGCCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTC 1080
consensus_10865#1 AGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTC 86
************************ ***********************************
consensus_10865#0 GCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGT 1140
consensus_10865#1 GCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGT 146
****** *****************************************************
consensus_10865#0 TTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACG 1200
consensus_10865#1 TNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACG 206
* **********************************************************
consensus_10865#0 ATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGT 1260
consensus_10865#1 ATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGT 266
************************************************************
consensus_10865#0 TTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTA 1320
consensus_10865#1 TTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTA 326
************************************************************
consensus_10865#0 CGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTC 1380
consensus_10865#1 CGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTC 386
************************************************************
consensus_10865#0 ATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATG 1440
consensus_10865#1 ATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAA 446
************************************************* * *
consensus_10865#0 TTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT 1493
consensus_10865#1 AA--------------------------------------------------- 448
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||