These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1161 fasta sequence [CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGATCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC-GCGGCCGCTGCTGGCCG-CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT-TGATGATAAC-CAAGGCCTAG-GATGCAT-TGCTCTGCAGTACATTAAA-GCATACGA-GGGTCAGTGCAACCAA-GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA-TTGCAT-GGGTGCCAATGCTGCAGTTTCGATC-GGTGCAGGTACAT-GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT-CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA-CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCTTTTGATCACTCGTCTATTCCCATCGGATGCGC] [+] EMBL AK060409 [CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGATCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC GCGGCCGCTGCTGGCCGCCGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGGAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGAT ] [+] EMBL AK101386 [ TCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC GCGGCCGCTGCTGGCCGCCGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCTTTTGATCACTCGTCTATTCCCATCGGATGCGC] [+] EMBL CB967337 [ gggaataCGCTGCGG CGCTGCTGGCCG CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACGGCCAGCAAGGCATCTACTCTCTGATGATAACACAAGGCCTAGAGATGCATATGCTCTGCAGTACATTAAATGCATACGACGGGTCAGTGCAACCAACGTCGGTGAAAtgcgaa ] [+] EMBL CB967356 [ agctt GCGG CGCTGCTGGCCG CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGG CGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACCT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTG ] [+] EMBL BU673625 [ tagct GCGGTCGCTGCTGG CG CGTGCTGGCGGCGC CNTCCTCTCCGCC CCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTTNCGC TTGTGAGTTTGAGTAGAAATGTGTTGTTGCCCCATTCTTTTGCTCGTCTTGGACCCTGG TTGGAATTTGGCTCCTG GAACCCGTTGAACCCTCTTGTTGCTGCCGGCCGGTTCTTT ] [+] EMBL CB967073 [ G CGTGCTGGCGGCGCTCCT CTCTCCG CGCCTCGG CGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTAGAGTAGAAATGTGTAGTTGCACCATTCTTTAGCTCGTCTTGGA CCTGGTTTGGAA TTTGCTTCTGAAAACCAGTAGAACACTC TGTTGCTG CGCACTGTTC TTTCC TTCTTA CAG ] [+] EMBL OSS16348A [ TGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTNTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGATTTGCATGGGGTGCCAATGCTGCAGTTTCGATCGGGTGCAGGTACATGGGAGACTGGTGGCTGCACTACTT ] consensusID : consensus_10866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCACACGGCAGTCACAGGGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCTCCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGCATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCTTTTG] [+] EMBL BI802623 [GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCACACGGCAGTCACAGGGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCTCCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGCATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10866#0 CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGA 60 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 TCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCC 120 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 TTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGA 180 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 CAATGGCGGCGACGACGACGATCCCCGCGCGGCCGCTGCTGGCCGCGTGCTGGCGGCGCT 240 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 CCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGC 300 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 ATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCTTGATGATAACCAAGGCCT 360 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 AGGATGCATTGCTCTGCAGTACATTAAAGCATACGAGGGTCAGTGCAACCAAGTCGGTGA 420 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 AAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCA 480 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 AGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGAC 540 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 CCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAG 600 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 CAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTT 660 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 CTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGT 720 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 GCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGATTGCATGGGTGCCAA 780 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 TGCTGCAGTTTCGATCGGTGCAGGTACATGGAGACTGGTGGCTGCACTACTTTTCTCCGC 840 consensus_10866#1 ------------------------------------------------------------ consensus_10866#0 GGCTTGTGTTTTCGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCT 900 consensus_10866#1 ----------------------GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCA 38 * * ** * **** * consensus_10866#0 CGTCTTGGACCTGGTTTGGAATTT-TGCTTCTGAAAACCA-GTAGAACACTCTTGTTGCT 958 consensus_10866#1 CACGGCAGTCACAG---GGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCT 95 * * * * ******* *************** ******************* consensus_10866#0 --GCC-GCACTGTTCTTTTCCT-TTCTTAGCAGCTGAACTCTGTC--AGGATTAAAGAGC 1012 consensus_10866#1 CCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGC 155 *** **************** ******************** ************* consensus_10866#0 ATTG-TTTTCTGCACTTATAGATGATGAATTACC-TGTGCAGGCTGTTCATCTGTTGTAT 1070 consensus_10866#1 ATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAG-CTGTTCATCTGTTGTAT 214 **** ***** *********************** ******* ***************** consensus_10866#0 TTATAGTATTTATCTATTCAAA-TGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCT 1129 consensus_10866#1 TTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCT 274 ********************** ****************** ****************** consensus_10866#0 TTTGATCACTCGTCTATTCCCATCGGATGCGC 1161 consensus_10866#1 TTTG---------------------------- 278 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||