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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1161 fasta sequence
[CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGATCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC-GCGGCCGCTGCTGGCCG-CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT-TGATGATAAC-CAAGGCCTAG-GATGCAT-TGCTCTGCAGTACATTAAA-GCATACGA-GGGTCAGTGCAACCAA-GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA-TTGCAT-GGGTGCCAATGCTGCAGTTTCGATC-GGTGCAGGTACAT-GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT-CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA-CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCTTTTGATCACTCGTCTATTCCCATCGGATGCGC]
[+] EMBL AK060409 [CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGATCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC GCGGCCGCTGCTGGCCGCCGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGGAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGAT ]
[+] EMBL AK101386 [ TCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCCTTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGACAATGGCGGCGACGACGACGATCCCCGC GCGGCCGCTGCTGGCCGCCGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGA CCTGGTTTGGAATTTTGCTTCTGAAAACCAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTTTCTTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATTGTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCTTTTGATCACTCGTCTATTCCCATCGGATGCGC]
[+] EMBL CB967337 [ gggaataCGCTGCGG CGCTGCTGGCCG CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACGGCCAGCAAGGCATCTACTCTCTGATGATAACACAAGGCCTAGAGATGCATATGCTCTGCAGTACATTAAATGCATACGACGGGTCAGTGCAACCAACGTCGGTGAAAtgcgaa ]
[+] EMBL CB967356 [ agctt GCGG CGCTGCTGGCCG CGTGCTGGCGGCGCTCCTCCTCTCCGCCGCCTCGG CGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACCT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTG ]
[+] EMBL BU673625 [ tagct GCGGTCGCTGCTGG CG CGTGCTGGCGGCGC CNTCCTCTCCGCC CCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTTNCGC TTGTGAGTTTGAGTAGAAATGTGTTGTTGCCCCATTCTTTTGCTCGTCTTGGACCCTGG TTGGAATTTGGCTCCTG GAACCCGTTGAACCCTCTTGTTGCTGCCGGCCGGTTCTTT ]
[+] EMBL CB967073 [ G CGTGCTGGCGGCGCTCCT CTCTCCG CGCCTCGG CGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGCATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCT TGATGATAAC CAAGGCCTAG GATGCAT TGCTCTGCAGTACATTAAA GCATACGA GGGTCAGTGCAACCAA GTCGGTGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCCGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGA TTGCAT GGGTGCCAATGCTGCAGTTTCGATC GGTGCAGGTACAT GGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTT CGCTTTGTGAGTTAGAGTAGAAATGTGTAGTTGCACCATTCTTTAGCTCGTCTTGGA CCTGGTTTGGAA TTTGCTTCTGAAAACCAGTAGAACACTC TGTTGCTG CGCACTGTTC TTTCC TTCTTA CAG ]
[+] EMBL OSS16348A [ TGAAAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCAAGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGACCCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAGCAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGTGCCCAAGTNTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGATTTGCATGGGGTGCCAATGCTGCAGTTTCGATCGGGTGCAGGTACATGGGAGACTGGTGGCTGCACTACTT ]
consensusID : consensus_10866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCACACGGCAGTCACAGGGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCTCCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGCATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCTTTTG]
[+] EMBL BI802623 [GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCACACGGCAGTCACAGGGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCTCCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGCATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10866#0 CACTAGCGAGCACGAGAGAGAGAGAGAAAAAGGCTTTAAAGAAAGCGAGCTCGCAGCAGA 60
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 TCGACCGGGAGAGATCACAAGCTGAGAGCTCTGAGCTCACCTCACCCAAGCTCCAAATCC 120
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 TTCCTCTCCTCTCGCCGACACGCACGCCCACCCAGCTTCATCGGATCCGGCACGCGGCGA 180
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 CAATGGCGGCGACGACGACGATCCCCGCGCGGCCGCTGCTGGCCGCGTGCTGGCGGCGCT 240
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 CCTCCTCTCCGCCGCCTCGGCCGCCGACAGCAAAAATAACCCTGCCGACCAGCTTGTGGC 300
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 ATTGATCAACAGCAACCGCACTGCCAGCAAGGCATCTACTCTTGATGATAACCAAGGCCT 360
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 AGGATGCATTGCTCTGCAGTACATTAAAGCATACGAGGGTCAGTGCAACCAAGTCGGTGA 420
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 AAGCAAGAAGCCTCCGGAGACCAGCTTCGCTGAAACATTTGCCCCAAATTGTGGCGTCCA 480
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 AGCTGCAACACTCACCAAGATCACCGGGAGGCTTCTGGCTTGCCAGTCTAACTATGCGAC 540
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 CCCAGACCAGGCGTTCAACTTCCTGGTTAATGATGCGAAGAGCATTCAGGTACTGCACAG 600
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 CAAGAACCACACGGAGGTGGGAGCAGCTGTCAGTGGCACTTCTGGCGGCGGGCCGTACTT 660
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 CTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAGCTTCAAGGTAGATGGTGGAGT 720
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 GCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGATTGCATGGGTGCCAA 780
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 TGCTGCAGTTTCGATCGGTGCAGGTACATGGAGACTGGTGGCTGCACTACTTTTCTCCGC 840
consensus_10866#1 ------------------------------------------------------------
consensus_10866#0 GGCTTGTGTTTTCGCTTTGTGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCT 900
consensus_10866#1 ----------------------GGTAACACAGGTGCACAGGAATTCACCGGGTCAGACCA 38
* * ** * **** *
consensus_10866#0 CGTCTTGGACCTGGTTTGGAATTT-TGCTTCTGAAAACCA-GTAGAACACTCTTGTTGCT 958
consensus_10866#1 CACGGCAGTCACAG---GGAATTTGTGCTTCTGAAAACCACGTAGAACACTCTTGTTGCT 95
* * * * ******* *************** *******************
consensus_10866#0 --GCC-GCACTGTTCTTTTCCT-TTCTTAGCAGCTGAACTCTGTC--AGGATTAAAGAGC 1012
consensus_10866#1 CCGCCAGCACTGTTCTTTTCCTGTTCTTAGCAGCTGAACTCTGGTCAAGGATTAAAGAGC 155
*** **************** ******************** *************
consensus_10866#0 ATTG-TTTTCTGCACTTATAGATGATGAATTACC-TGTGCAGGCTGTTCATCTGTTGTAT 1070
consensus_10866#1 ATTGGTTTTCCGCACTTATAGATGATGAATTACCATGTGCAG-CTGTTCATCTGTTGTAT 214
**** ***** *********************** ******* *****************
consensus_10866#0 TTATAGTATTTATCTATTCAAA-TGTACTCTTTGGAAAATAATTGTGATTGTAAGATCCT 1129
consensus_10866#1 TTATAGTATTTATCTATTCAAAATGTACTCTTTGGAAAATACTTGTGATTGTAAGATCCT 274
********************** ****************** ******************
consensus_10866#0 TTTGATCACTCGTCTATTCCCATCGGATGCGC 1161
consensus_10866#1 TTTG---------------------------- 278
****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||