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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 889 fasta sequence
[CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGGAGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGTGAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA]
[+] EMBL AU184383 [CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGGAGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGC ]
[+] EMBL CF293028 [ TTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCATCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAAGTTCTCAAGTTCATCGCAGCAGCAGCAATGGTGCAAAAGATCGTGATCAAGGTGCACATGCCGAGCGACAAGTGCCGGAGGAAGGCGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGCGGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGT ]
[+] EMBL AU174956 [ TGGTGTACTACCACCATGGCTACGGCTACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCC ]
[+] EMBL AU174955 [ GGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCTGCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAATCAGGGCGGAATCCAGAATGAGTTTGGAGGGAGGCTCGTCTTTACGACCTCCCTTCTTCTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCTGATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGTGAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA]
[-] EMBL CF293027 [ CTTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGAAGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTTCACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTaaaaaa ]
consensusID : consensus_10878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 564 fasta sequence
[AAGCTCACCTCTCTTGCTCGACGATCCACACACGAATTTCCTCGACCTCTTCGTTCATCCCAATCTCATCGTTCGATCGATCAACAATTCTCCTCAGCAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGGCGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG-CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATTA]
[+] EMBL AU174639 [AAGCTCACCTCTCTTGCTCGACGATCCACACACGAATTTCCTCGACCTCTTCGTTCATCCCAATCTCATCGTTCGATCGATCAACAATTCTCCTCAGCAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGGCGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGGCCCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACT ]
[+] EMBL AU071251 [ GCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATTA]
[+] EMBL AU071245 [ GCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACAGGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGAGGAAGGTCGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGG CCAAGAAGGAGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACNACTACTACTACCCGTACCACCATTACAGCCCTTACGGCTACATCATGTAGAATACCATGTGTACACATACCGTCCGTATGTATGTACACTGGTAGTGTATACATCGCGTAGTGCGAATATTCTTTTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGgat ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10878#0 CACTTCCCAGCTTCTCTTTCTTGCTCCGTCAATACACCAGCACACAAATCAATCCTAGCA 60
consensus_10878#1 -------AAGCTCACCTCTCTTGCTC-GACGATCCAC----ACACGAATT--TCCT--CG 44
**** ** ******** * * ** *** **** *** **** *
consensus_10878#0 TCTACCAAGTTCCTCGGACTCTTCGTCGTTCCAA-GTTCTCAAGTTCATCGCAGCAGCAG 119
consensus_10878#1 ACCTCTTCGTTCATCCCAATCT-CATCGTTCGATCGATCAACAATTCTCCTC------AG 97
* * **** ** * *** * ****** * * ** * *** * * **
consensus_10878#0 CAATGGTGCAAAAGATCGTGATCAAGGTGCACATGTCGAGCGACAAGTGCCGGAGGAAGG 179
consensus_10878#1 CAATGGCGCAAAAGATCGTGATCAAGGTGCACATGGGGAGCGACAAGTGCAGGCGGAAGG 157
****** **************************** ************* ** ******
consensus_10878#0 CGATGGCGCTGGCGGCGTCGACGGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACA 239
consensus_10878#1 CGATGTCGCTGGTGGCGGCGACCGGCGGCGTGGTGTCGGTGGAGCTCGCCGGCGACGACA 217
***** ****** **** **** *************************************
consensus_10878#0 GGAGCAAGGTGGTGGTGGTGGGCGACGTGGACTCCATCGGGCTGACGAACGCGCTGCGGC 299
consensus_10878#1 GGAGCAAGGTGGTGGTGGTGGGCGAGGTGGACTCGGTGAAGCTGACGAGCTTGCTGCGGA 277
************************* ******** * ******** * *******
consensus_10878#0 GGAAGGTGGACGGGTCGGCGGAGCTGGTGGAGGTGAGCGACGCCAGCAAGAAGAAGGAGG 359
consensus_10878#1 GGAAGGT---CGGGCCGGCCGAGCTGGTGGAGGTCGGCGACGCCAAGCCGGCCAAGAAGG 334
******* **** **** ************** ********* * *** ***
consensus_10878#0 AGGAGGCGAAGAAGAAGGAGGAGAAGGAGGAGCTGGTGTACTACCACCATGGCTACGGCT 419
consensus_10878#1 AGGAGAAGAAGGAAGAGAAGAAACCTGAGACCGTCCCGCCGTACTACTACTACTACCCGT 394
***** **** * ** ** * *** * * *** ** * **** *
consensus_10878#0 ACTACCACCCCGGCGGCGTGTATCACCACCACCCGGGCTACGGGCCTCACGGCTGCCCCT 479
consensus_10878#1 ACCACCATTACAGCC-CTTACGGCTACATCATGTAGAATACCATGTGTACACATACCG-T 452
** **** * ** * * * ** ** * *** ** * ** *
consensus_10878#0 GCGGCTGCAACCCGAGCCCGGACAGCACCTGCTCCATCATGTAGAGGAGAGGAAATGCAA 539
consensus_10878#1 CCGTATGTA---TGTACACTGGTAGTGTATA---CATCGCGTAGT---GCGAATATTCTT 503
** ** * * * * * ** * **** **** * * * ** *
consensus_10878#0 TCAGGGCGGAATCCAGAATGAGTTTGG-AGGGAGGCTCGTCTTTACGACCTCCCTTCTTC 598
consensus_10878#1 TTTGTACGGTATTGCAAGAGAGATTATTATGGTGATGTTTTGTTTTGCTCTCCCGCGATT 563
* * *** ** * *** ** * ** * * ** * ***** *
consensus_10878#0 TTCTTCTCCATCCCCCTATCTTCTCTTCACGGAGATTTAGGGGGACAGGGGAATTGAAGA 658
consensus_10878#1 A----------------------------------------------------------- 564
consensus_10878#0 AGGGAATGGATGTCGAGCCTTCCAGCATCTATTCTGGATCCGTACGTCCTGTTCATACTT 718
consensus_10878#1 ------------------------------------------------------------
consensus_10878#0 CACAGTAGCTGTACAGTACTAGCATGAGTTTTGTGTATAAAGATTACGGTTTGTTTTGCT 778
consensus_10878#1 ------------------------------------------------------------
consensus_10878#0 GATCCCTCTACTATGAAGTGGTGTTTTGTGTCTCATGGTATGAAGTGGGGTCGAGGATGT 838
consensus_10878#1 ------------------------------------------------------------
consensus_10878#0 GAGATGATTTGAGGTTTTGAACAAGGCGATCTTGGTATTTTCAAAAAAAAA 889
consensus_10878#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||