cluster # 10879

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Oryza sativa
cluster # 10879 cluster # 10879 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10879#0 length = 1380 sequences # 7

consensus_10879#1 length = 317 sequences # 1

consensusID : consensus_10879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1380
fasta sequence

                              [GGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCGACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCTCGCGGCGGCGGCGGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTCGCTCCACCACCACCGCCTCCCGCCGCCTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGCACCACCGCCTCGACGACTTCCGCGAGCCGCACCACCTG-CCGCCCCCGCACCACCACCACCACCTNGACGAATTCGGCGAGCCGCCGCGCCACCACGTGTTCGCGGGCCACGGCGGNGGCGCCGGGCCCCCCCCGGCGCCGCACGTCGTGGCGGCGCTGGAGGAGCGGCTCGGCGCGGAGATCGAGGAGGCGCACGTGCTGCTTGGCCAGAACCAGCGGCTGGCCGCGACGCACGTGGCGCTCGTGCAGGAGGTCTCCGCCGTGCGGCACGAGCTCGGCCGCACCGCTCGCGGCCTTGCCGCTGCCCAGGAGGAAGGCGAACTCCGTCTTCGCGAGGTCTATGAGAGGTCAATGAAGATGGAGGCAGAGCTGCGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGACATTCAGAAGTTGGGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCAGGACTTGGCTCGATCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCAGGAGATAAGGCATGAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATATGCCGAGAGCTATGAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGAAGTGGAGAAGCTTCGAGCTGAGGCCG-AGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGATTTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCTACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTGATTTATCCTAATACAACAAATCTAGACAAAAATTCTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182841             [GGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCGACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCTCGCGGCGGCGGCGGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTCGCTCCACCACCACCGCCTCCCGCCGCCTNATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGCACCACCGCCTCGACGACTTCCGCGAGCCGCACCACCTG CCGCCCCCGCACCACCACCACCACCTNGACGAATTCGGCGAGCCGCCGCGCCACCACGTGTTCGCGGGCCACGGCGGNGGCGCCGGGCCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK069914             [      TCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCGACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCTCGCGGCGGCGGCGGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTCGCTCCACCACCACCGCCTCCCGCCGCCTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGCACCACCGCCTCGACGACTTCCGCGAGCCGCACCACCTG CCGCCCCCGCACCACCACCACCACCTCGACGAATTCGGCGAGCCGCCGCGCCACCACGTGTTCGCGGGCCACGGCGGCGGCGCCGGGCCCCCCCCGGCGCCGCACGTCGTGGCGGCGCTGGAGGAGCGGCTCGGCGCGGAGATCGAGGAGGCGCACGTGCTGCTTGGCCAGAACCAGCGGCTGGCCGCGACGCACGTGGCGCTCGTGCAGGAGGTCTCCGCCGTGCGGCACGAGCTCGGCCGCACCGCTCGCGGCCTTGCCGCTGCCCAGGAGGAAGGCGAACTCCGTCTTCGCGAGGTCTATGAGAGGTCAATGAAGATGGAGGCAGAGCTGCGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGACATTCAGAAGTTGGGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCAGGACTTGGCTCGATCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCAGGAGATAAGGCATGAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATATGCCGAGAGCTATGAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGAAGTGGAGAAGCTTCGAGCTGAGGCCG AGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGATTTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCTACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTGATTTATCCTAATACAACAAATCTAGACAAA                                           ]
[+] EMBL AU197651             [                                           GACCTAGGGTTCCGGCGACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCTCGCGGCGGCGGCGGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTNGCTCCACCACCACCGNCTCCCGCCGCCTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGCACCACCGGCTCGACGACTTCCGNGAGCCGCACCACCTGCCCGCCCCCGCACCACCANCACCACCTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB657615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGAACTCCGTCTTCGCGAGGTCTATGAGAGGTCAATGAAGATGGAGGCAGAGCTGCGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGACATTCAGAAGTTGGGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCAGGACTTGGCTCGATCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCAGGAGATAAGGCATGAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATATGCCGAGAGCTATGAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGAAGTGGAGAAGCTTCGAGCTGAGGCCG AGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGA TTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCTACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAAaaaaaga                                                                                     ]
[-] EMBL CB657614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAAGATGGAGGCAGAGCTGGGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGACATTCAGAAGTTGGGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCAGGACTTGGCTCGATCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCAGGAGATAAGGCATGAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATATGCCGAGAGCTATGAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGAAGTGGAGAAGCTTCGAGCTGAGGCCG AGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGTTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGTACGGAGATGA TTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTTTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTAATAGTATACTCTCTTGAAAGTTGTGCTGTACATGTATTc                                                                                                          ]
[+] EMBL AU173062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGAGGCCGAAGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGATTTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCTACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTGATTTATCCTAATACAACAAATCTAGACAAAAA                                         ]
[+] EMBL CF312213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCAAAATGTTGCAACCTAGGACGTGATTTATCCTAATACAACAAATCTAGACAAAAGTTCTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10879#0
GGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCG
ACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCTCGCGGCGGCGGC
GGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTCGCTCCACCACCACCGCCTCCCG
CCGCCTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGCACCACCGCCTC
GACGACTTCCGCGAGCCGCACCACCTGCCGCCCCCGCACCACCACCACCACCTNGACGAA
TTCGGCGAGCCGCCGCGCCACCACGTGTTCGCGGGCCACGGCGGNGGCGCCGGGCCCCCC
CCGGCGCCGCACGTCGTGGCGGCGCTGGAGGAGCGGCTCGGCGCGGAGATCGAGGAGGCG
CACGTGCTGCTTGGCCAGAACCAGCGGCTGGCCGCGACGCACGTGGCGCTCGTGCAGGAG
GTCTCCGCCGTGCGGCACGAGCTCGGCCGCACCGCTCGCGGCCTTGCCGCTGCCCAGGAG
GAAGGCGAACTCCGTCTTCGCGAGGTCTATGAGAGGTCAATGAAGATGGAGGCAGAGCTG
CGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGACATTCAGAAGTTG
GGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCAGGACTTGGCTCGA
TCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCAGGAGATAAGGCAT
GAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATATGCCGAGAGCTAT
GAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGAAGTGGAGAAGCTT
CGAGCTGAGGCCGAGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTC
GGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAATGCTGGATACAAC
ATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGC
TCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGATTT
TTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGACAAACCTAACAGC
TTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCTACTGTGAGTTGTG
CTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTGATTTATCCTAATA
CAACAAATCTAGACAAAAATTCTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [CCGGAAACTCGAGGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCNACNACCATGGCCGGCCGCCACCGTAANCCGNCGCCCCCATCCTTCCCTNGCGGCGGCGGCGGNGGCGTGGTCAGGGGCTANCACCCNTNTNCTTCCTCGNTCCACCACCACCGACTCCCGCCGACTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGGACCACCNNNTNGACGACTTCCGTGAGCCGNACCACCTGTGCGNCCCTGTACCATCATNACCATCTTGACGAATTTG]

[+] EMBL OSR01191A            [CCGGAAACTCGAGGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCTAGGGTTCCGGCNACNACCATGGCCGGCCGCCACCGTAANCCGNCGCCCCCATCCTTCCCTNGCGGCGGCGGCGGNGGCGTGGTCAGGGGCTANCACCCNTNTNCTTCCTCGNTCCACCACCACCGACTCCCGCCGACTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCGGACCACCNNNTNGACGACTTCCGTGAGCCGNACCACCTGTGCGNCCCTGTACCATCATNACCATCTTGACGAATTTG]




>consensus_10879#1
CCGGAAACTCGAGGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCT
AGGGTTCCGGCNACNACCATGGCCGGCCGCCACCGTAANCCGNCGCCCCCATCCTTCCCT
NGCGGCGGCGGCGGNGGCGTGGTCAGGGGCTANCACCCNTNTNCTTCCTCGNTCCACCAC
CACCGACTCCCGCCGACTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCG
GACCACCNNNTNGACGACTTCCGTGAGCCGNACCACCTGTGCGNCCCTGTACCATCATNA
CCATCTTGACGAATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10879#0      ------------GGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCT 48
consensus_10879#1      CCGGAAACTCGAGGTTATTCGCGCAAAATCTCCTCCCGTCGGTCGCCCGAGGTCTGACCT 60
                                   ************************************************

consensus_10879#0      AGGGTTCCGGCGACTCCCATGGCCGGCCGCCACCGTAACCCGCCGCCCCCATCCTTCCCT 108
consensus_10879#1      AGGGTTCCGGCNACNACCATGGCCGGCCGCCACCGTAANCCGNCGCCCCCATCCTTCCCT 120
                       *********** **  ********************** *** *****************

consensus_10879#0      CGCGGCGGCGGCGGGGGCGTGGGCAGGGGCCACCACCCGCCTCCTCCCTCGCTCCACCAC 168
consensus_10879#1      NGCGGCGGCGGCGGNGGCGTGGTCAGGGGCTANCACCCNTNTNCTTCCTCGNTCCACCAC 180
                        ************* ******* ******* * *****   * ** ***** ********

consensus_10879#0      CACCGCCTCCCGCCGCCTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCG 228
consensus_10879#1      CACCGACTCCCGCCGACTCATCACCTCGACGACTTCCGGGAGCCGCCGCTGCTCCCCCCG 240
                       ***** ********* ********************************************

consensus_10879#0      CACCACCGCCTCGACGACTTCCGCGAGCCGCACCACCTGC-CGCCCCCGCACCACCACCA 287
consensus_10879#1      GACCACCNNNTNGACGACTTCCGTGAGCCGNACCACCTGTGCGNCCCTGTACCATCATNA 300
                        ******   * *********** ****** ********  ** *** * **** **  *

consensus_10879#0      CCACCTNGACGAATTCGGCGAGCCGCCGCGCCACCACGTGTTCGCGGGCCACGGCGGNGG 347
consensus_10879#1      CCATCTTGACGAATTTG------------------------------------------- 317
                       *** ** ******** *                                           

consensus_10879#0      CGCCGGGCCCCCCCCGGCGCCGCACGTCGTGGCGGCGCTGGAGGAGCGGCTCGGCGCGGA 407
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GATCGAGGAGGCGCACGTGCTGCTTGGCCAGAACCAGCGGCTGGCCGCGACGCACGTGGC 467
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GCTCGTGCAGGAGGTCTCCGCCGTGCGGCACGAGCTCGGCCGCACCGCTCGCGGCCTTGC 527
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CGCTGCCCAGGAGGAAGGCGAACTCCGTCTTCGCGAGGTCTATGAGAGGTCAATGAAGAT 587
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GGAGGCAGAGCTGCGAGCAGTAGAGGAAATGAGGGCAGAGCTTGCACAGGTTCGCCTCGA 647
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CATTCAGAAGTTGGGTGCAGCAAGGCAGGAACTCATGGGTCAGGTCCAGGGGTTCACCCA 707
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GGACTTGGCTCGATCAGCAGTGGACCTGCAGCAGGTGGCTGCGTTAAAAGCTGAGATCCA 767
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GGAGATAAGGCATGAAACACAACATTTGAGATCTGGCATTGAGGTTGAGAAGAAAGGATA 827
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      TGCCGAGAGCTATGAGCAGGGACAAGAGATGCAGAAGAAATTGATATCAGTGGCTTCTGA 887
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      AGTGGAGAAGCTTCGAGCTGAGGCCGAGAAGAGGTCACGAGCTGCTGTGTCTGGAGGCAA 947
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      TCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTTATAA 1007
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      TGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCA 1067
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      GTTTGGGCCTGGCTCAACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGG 1127
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      ACGGAGATGATTTTTTTTTCAGGTGTGTTCAGCAAATTACAAAAGCATACTTTTCTGGGA 1187
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      CAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATACTCT 1247
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      ACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTG 1307
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      ATTTATCCTAATACAACAAATCTAGACAAAAATTCTATCCAAAAAAAAAAAAAAAAAAAA 1367
consensus_10879#1      ------------------------------------------------------------
                                                                                   

consensus_10879#0      AAAAAAAAAAAAA 1380
consensus_10879#1      -------------