Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10880 cluster # 10880       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10880#0 length = 1239 sequences # 6  
consensus_10880#1 length = 1192 sequences # 2  

consensusID : consensus_10880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1239
fasta sequence
                              [TGGTGGTGCCGTGTAGAGGGGGAGGCGACGAGACGAGACGAGAGGAAGGAGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCGACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTT-GGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT-GATTCACTACT-ATCTTCACTT-GTTTTAAATTTATCTTCATCCGAAGCC-GAAGATAC-AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAATTCCATGTTTGGTATATTCATGAGGTTACATTATCTGTTC]

[+] EMBL AK059764             [TGGTGGTGCCGTGTAGAGGGGGAGGCGACGAGACGAGACGAGAGGAAGGAGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCGACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTT GGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT GATTCACTACT ATCTTCACTT GTTTTAAATTTATCTTCATCCGAAGCC GAAGATAC AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAATTC                                     ]
[+] EMBL AK099304             [                      AGGCGACGAGACGAGACGAGAGGAAGGAGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCGACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTT GGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT GATTCACTACT ATCTTCACTT GTTTTAAATTTATCTTCATCCGAAGCC GAAGATAC AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAA                                              ]
[+] EMBL AU056480             [                                     ACGAGAGGAAGGAGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCGACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCG GCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGGTCTTCTTGGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACTGGATTCACTACTAATCTTCACTTGGTTTTAAATTTATCTTCATCCGAAGCCGGAAGATACAAGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB000279             [                                                                                                                                                                                                                                                                                                                GCTATGAAGATCATGACATTACATCTCTTTGTGCCTATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTT GGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT GATTCACTACT ATCTTCACTT GTTTTAAATTTATCTTCATCCGAAGCC GAAGATAC AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAAC                                                                                    ]
[-] EMBL CB654420             [                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTCAGCACAGCTACCTG TTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACGTACTTAAAGGTTCTTCTT GGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT GATTCACTACT ATCTTCACTT GTTTTAAATTTATCTTCATCCGAAGCC GAAGATAC AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAATTCCATGTTTGGTATATTCATGAGGTTACATTATCTGTTC]
[+] EMBL CA753493             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACT GATTCACTACT ATCTTCACTT GTTTTAAATTTATCTTCATCCGAAGCC GAAGATAC AGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTCCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTNACTTGTCATGGAAGCAGTTCTGAACATTTAT                                                                                                                                                                                        ]


>consensus_10880#0 TGGTGGTGCCGTGTAGAGGGGGAGGCGACGAGACGAGACGAGAGGAAGGAGACGAGACGA TACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCC GACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAG AATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGAT CGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCT TACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCC TTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTG GATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGC AGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACC TACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCA GTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGAT ACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCT TCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGG CGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTT GATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTT GTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCA TCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCC TCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTA GGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTT AACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAAT TCCATGTTTGGTATATTCATGAGGTTACATTATCTGTTC



consensusID : consensus_10880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1192
fasta sequence
                              [AGAGGCCCTTGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCCCCCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGATACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGATCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAATTCCATGTTTGGTAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB654419             [AGAGGCCCTTGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCCCCCCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCAGTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGATACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGGCGGAGGCGATCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCT                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU056481             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGTNCCAGCG AATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTG CTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGNGAGAAGGCGGAGNCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGNCTCTACCCCTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAATTCCATGTTTGGTAAAAAAAAAAAAAAAAAAA]


>consensus_10880#1 AGAGGCCCTTGACGAGACGATACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAG CCCGCGGCGCCATGGATTCCCCCCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGT ACGCGCTGCAGCGCGCCCAGAATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCG CGTCGCACTCCCACCTCGATCGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTAC GGCCAGACTTCCCATGTCCTTACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCC ATTTAGAGGATGAGCACCCCTTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTA GGATTTCAAAGGACTTATTGGATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGC AGAGACATCACAGATTACGCAGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAG GGAGAGATCTACAGGAGACCTACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTG GTACCAATGCAGCAAGTTCAGTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTAT CTTCATCCGAAGCCGAAGATACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATT GGTTTAAAAGAACACTGCCTTCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTC AGGAAGAAAGGGAGAGAAGGCGGAGGCGATCTGCAGTGAGATCATCTTTTGTACAGCACC TGCTTGTCTCTACCCTTTTTTGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACT GGAATCTCGAGTGGGCCTTTTGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCT TCCAAATCCTGAAGCAGTTCATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGAT GATGAACCGATGTGGCTGGCCTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTC GAAATCCAATTCAGATTGCTAGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCC ATATGATTTCATTATGTGCTTAACAATACAATGAACATTACCCCCAATTTGATTCTTACT ATAAACATTTCAAAATTGAATTCCATGTTTGGTAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10880#0      TGGTGGTGCCGTGTAGAGGGGGAGGCGACGAGACGAGACGAGAGGAAGGAGACGAGACGA 60
consensus_10880#1      ----------------------------------------AGAGGCCCTTGACGAGACGA 20
                                                               *****     **********

consensus_10880#0      TACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCC 120
consensus_10880#1      TACGCGGAGATCCGGGCGGCGACCCGCGGAGGAGGAGGAGCCCGCGGCGCCATGGATTCC 80
                       ************************************************************

consensus_10880#0      GACCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAG 180
consensus_10880#1      CCCCACTGGATCTCCCGCCTCATGGCCGCCAAGCGCCAGTACGCGCTGCAGCGCGCCCAG 140
                         **********************************************************

consensus_10880#0      AATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGAT 240
consensus_10880#1      AATCACCACCACGCCACCGCCACCGCCACCGCCACCGCCGCGTCGCACTCCCACCTCGAT 200
                       ************************************************************

consensus_10880#0      CGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCT 300
consensus_10880#1      CGGTATGGGTACGATGATGTTGAGCCAGAGGACGAGGTACGGCCAGACTTCCCATGTCCT 260
                       ************************************************************

consensus_10880#0      TACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCC 360
consensus_10880#1      TACTGCTATGAAGATCATGACATTACATCTCTTTGTGCCCATTTAGAGGATGAGCACCCC 320
                       ************************************************************

consensus_10880#0      TTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTG 420
consensus_10880#1      TTTGAGTCTAAAGTTGTGGCTTGCCCGGTTTGCTCGGCTAGGATTTCAAAGGACTTATTG 380
                       ************************************************************

consensus_10880#0      GATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGC 480
consensus_10880#1      GATCACATAACCCTTCAGCACAGCTACCTGTTTAGACTGCAGAGACATCACAGATTACGC 440
                       ************************************************************

consensus_10880#0      AGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACC 540
consensus_10880#1      AGAGTTGCTGTTCCTAGCAACCATGCTCTCTCCCTTGGAGGGAGAGATCTACAGGAGACC 500
                       ************************************************************

consensus_10880#0      TACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCA 600
consensus_10880#1      TACTTAAAGGTTCTTCTTGGAAACAGTAGTCGAAGCAGTGGTACCAATGCAGCAAGTTCA 560
                       ************************************************************

consensus_10880#0      GTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGAT 660
consensus_10880#1      GTCACTGATTCACTACTATCTTCACTTGTTTTAAATTTATCTTCATCCGAAGCCGAAGAT 620
                       ************************************************************

consensus_10880#0      ACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCT 720
consensus_10880#1      ACAGCGAAATTTTCTGCTCTAGCTGTGGTAGAAAATAATTGGTTTAAAAGAACACTGCCT 680
                       ************************************************************

consensus_10880#0      TCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGG 780
consensus_10880#1      TCAAAGACTTGGAAGGCAAGCTCTGATTCTAATCTTAGTCAGGAAGAAAGGGAGAGAAGG 740
                       ************************************************************

consensus_10880#0      CGGAGGCGAGCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTT 840
consensus_10880#1      CGGAGGCGATCTGCAGTGAGATCATCTTTTGTACAGCACCTGCTTGTCTCTACCCTTTTT 800
                       ********* **************************************************

consensus_10880#0      -GATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTT 899
consensus_10880#1      TGATGACTAGCAGAAGAAAAAAAGAGCAGCTCCGTGCACTGGAATCTCGAGTGGGCCTTT 860
                        ***********************************************************

consensus_10880#0      TGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTC 959
consensus_10880#1      TGTCCACACATTTCTGGATGAATGATGAAGTAAAGCATCTTCCAAATCCTGAAGCAGTTC 920
                       ************************************************************

consensus_10880#0      ATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGC 1019
consensus_10880#1      ATCCAACCGGAGGCTGGTTCCTGATCCTTTCGACATTGATGATGAACCGATGTGGCTGGC 980
                       ************************************************************

consensus_10880#0      CTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCT 1079
consensus_10880#1      CTCTTACTTGTCATGGAAGCAGTTCTGAACATTTATGTTCGAAATCCAATTCAGATTGCT 1040
                       ************************************************************

consensus_10880#0      AGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCT 1139
consensus_10880#1      AGGCTATCGACTAGCGTTACTGTATTGATTGTGTTATTCCATATGATTTCATTATGTGCT 1100
                       ************************************************************

consensus_10880#0      TAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAA 1199
consensus_10880#1      TAACAATACAATGAACATTACCCCCAATTTGATTCTTACTATAAACATTTCAAAATTGAA 1160
                       ************************************************************

consensus_10880#0      TTCCATGTTTGGTATATTCATGAGGTTACATTATCTGTTC 1239
consensus_10880#1      TTCCATGTTTGGTAAAAAAAAAAAAAAAAAAA-------- 1192
                       ************** *   *  *    * *          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)