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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1339 fasta sequence
[CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG-AAAAAGATCCTCCATGGAGG-ACTTCTATGACACCAG-AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC-AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGAGGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGAC-GAGAGGCAGAGGATAGAGGATGC-TGGTGGTT-TTGTGATGTGGGC-TGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC-GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGTGCCATTCTAAAAAAAAA]
[+] EMBL CF311009 [CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGC ]
[+] EMBL CF309159 [ TCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCAC ]
[+] EMBL AK071637 [ TGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGAGGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGAC GAGAGGCAGAGGATAGAGGATGC TGGTGGTT TTGTGATGTGGGC TGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGT ]
[+] EMBL C93614 [ TCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTNATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGNAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCNAGCTCTCCTGG AAAAANATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTAATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCANGCAAGAACCTCTTCACCAn ]
[+] EMBL BP432943 [ CTCTCCTGGCAAAAAGATCCTCCATGGAGGCACTTCTATGACACCAGCAATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTNGGNGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCANAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATNCAGTGATACCAAGNCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGNCGACTGCCTCC CTGCAATTCTCGNAGGCGACCGTC ]
[+] EMBL AA754366 [ cgAGCCTGATCAGTCAGACGGAGAGGCAGAGGATAGAGGATGCTTGGTGGTTAATGTGATGTGGGCTTGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTVTCATAAGTGTCATCTGTRGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGGSTGTGTTTTTHDCCATCTCCTTC ]
[-] EMBL CF309158 [ GTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGTTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGTGCCATTCTAAAAAAAAA]
consensusID : consensus_10895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGATCAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTTGCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGTGTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGCCATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATGTGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF311010 [TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGATCAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTTGCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGTGTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGCCATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATGTGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10895#0 CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTG 60
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 CTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGT 120
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 CTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCC 180
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 GGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGC 240
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 TATGGTTATGCGAGCTCTCCTGGAAAAAGATCCTCCATGGAGGACTTCTATGACACCAGA 300
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 ATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGA 360
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 GCTCGAGCAGCAGAATTCGTCAAGCAGAACCTCTTCACCAATTTAATCAAGCACCCAAAG 420
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 TTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTT 480
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 CTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTC 540
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 GTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGA 600
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 GGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGACGAGAGGCAGAGG 660
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 ATAGAGGATGCTGGTGGTTTTGTGATGTGGGCTGGAACATGGCGCGTGGGTGGTGTTCTT 720
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 GCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAG 780
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 ATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTC 840
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 TGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAG 900
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 CAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACC 960
consensus_10895#1 ------------------------------------------------------------
consensus_10895#0 TGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGAT 1020
consensus_10895#1 TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGAT 60
***** ** ******** **************** ********* ***************
consensus_10895#0 CAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTT 1080
consensus_10895#1 CAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTT 120
************** ************* * ********** ***** ********* **
consensus_10895#0 GCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGT 1140
consensus_10895#1 GCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGT 180
******** ** ************** ********* ** ********* **********
consensus_10895#0 GTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGC 1200
consensus_10895#1 GTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGC 240
***** ******************************************************
consensus_10895#0 CATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGT 1260
consensus_10895#1 CATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGT 300
*** ************** *********** ******************* *********
consensus_10895#0 TAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGA-TGTAATGATATG 1319
consensus_10895#1 TAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATG 360
********************************** ** ********* ************
consensus_10895#0 TGTGCCATTCTAAAAAAAAA-------------------------- 1339
consensus_10895#1 TGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 406
** **** * **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||