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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence
[GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT-G-AAATCGAAGGGAGAGTCG-AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA-GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA-CTGGAGATGGTAAACCTG-TCAC-CAAGGGCGTCGACTCCATCG-CCGTCATGGAGGCTGCCAGCATGC-CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA-ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT-GTAGAATGCATTGGCCAGAGTCAGA-TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTGAATTTTGCTTTAAAAA]
[+] EMBL AK072203 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTG ]
[+] EMBL AK102297 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTG ]
[+] EMBL AK060888 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAA ]
[-] EMBL CB625393 [ CACTATAAACCAAGTGCAGAAAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCAATAAGA ]
[+] EMBL BI813540 [ AGAGGCTCGCAAATCGAAGGGAGATTCGTAAATCCTATCAGCTC GGCACAGGCTCTCCCTGAAATGGACGCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCCATGGAGCTCAGAATGCAAGCATCTGGAGATGGTAAACCTGCTCACACAAGGGCGTCGACTCCATCGACCGTCATGGA GCTGCCAGCATGCACTCTCACCTACACCC ACTTACCATCATCTCCTCTTGGACCACATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCCTTGCAGAATTGCAGTTAAGCTCTTGGTCGTAGAATGCATTGGCCAGAGTCAGACTGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTGAATTTTGCTTTAAAAA]
consensusID : consensus_10897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAATGCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCGTGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATCATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGAGCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGCAGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCATAAGATTAGTAATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA]
[+] EMBL BI802865 [AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAATGCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCGTGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATCATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGAGCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGCAGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCATAAGATTAGTAATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA]
consensusID : consensus_10897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence
[GAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000300 [GAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB684727 [ TCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10897#0 GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATA 60
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 GCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGT 120
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 CACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGA 180
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 GTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCA 240
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 GTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATT 300
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 CTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGT 360
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 GCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCA 420
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 GGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGTG 480
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 AAATCGAAGGGAGAGTCGAAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGAGC 540
consensus_10897#2 ------------------------------------------------------------
consensus_10897#1 ------------------------------------------------------------
consensus_10897#0 ACTGGGGTTGGTCCAAGGATTGGA--TGTGTGAAGGACTACCC--AATGGAGCTCAGAAT 596
consensus_10897#2 -------------------------------------------------GAGCTCAGAAT 11
consensus_10897#1 ---------------AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAAT 45
***********
consensus_10897#0 GCAAGCACTGG--AGATGGTAAACCTG-TCACC-AAGGGCGTC--GACTCCATC--GCCG 648
consensus_10897#2 GCAAGCACTGG--AGATGGTAAACCTG-TCACC-AAGGGCGTC--GACTCCATC--GCCG 63
consensus_10897#1 GCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCG 105
******** * ************** ***** ******** ******** ****
consensus_10897#0 T-CATGG-AGGCTGCC--AGCATG-CCTCT---CACCTACACCC--AACTT---ACCATC 695
consensus_10897#2 T-CATGG-AGGCTGCC--AGCATG-CCTCT---CACCTACACCC--AACTT---ACCATC 110
consensus_10897#1 TGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATC 165
* ***** ****** * ****** ***** *** *** ** ***** ** ***
consensus_10897#0 ATCTCCTCT----TGGACCAATCC--AGACTTCACTGCCCCAGCCA--AGTTA-GAAT-A 745
consensus_10897#2 ATCTCCTCT----TGGACCAATCC--AGACTTCACTGCCCCAGCCA--AGTTA-GAAT-A 160
consensus_10897#1 ATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGA 225
** ** ********* * **************** ** ***** **** *
consensus_10897#0 GCATA-TGAGTATGTAACT-AGTAT--GTGCAGCAGCGAGACACCATTG--CAGAATTGC 799
consensus_10897#2 GCATA-TGAGTATGTAACT-AGTAT--GTGCAGCAGCGAGACACCATTG--CAGAATTGC 214
consensus_10897#1 GCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGC 285
***** ************* *** ********************** ********
consensus_10897#0 AGTT-AAGCTCTTGGTGTAGAATGCAT-TGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 857
consensus_10897#2 AGTT-AAGCTCTTGGTGTAGAATGCAT-TGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 272
consensus_10897#1 AGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 345
**** ********************** ********************************
consensus_10897#0 GCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTA 917
consensus_10897#2 GCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTA 332
consensus_10897#1 -CTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCA-TAAGATTAGTA 403
********************************** ************ ***********
consensus_10897#0 ATA-TAAATCCTCCATGTTTGAATTTTGCTTTAAAAA 953
consensus_10897#2 ATA-TAAAAAA---AAAAAAAAAAAAAAAAAAAAAAA 365
consensus_10897#1 ATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA- 439
*** * ** * ** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||