These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1279 fasta sequence [GCACATGCTACAGACTGTTCACAGAATCAGCTTACCAGAATGAGATGCTACCTAACCCAGTGCCTGAGATCCAAAGGACCAATCTGGGGAATGTGGTTCTGCTACTGAAATCTCTGAAAGTCGAAAACTTGCTTGACTTTGACTTCATGGACCCACCCCCGCAGGAGAACATCCTCAACTCCATGTACCAGCTCTGGGTGTTGGGTGCCTTGAACAATGTTGGTGCTCTTACAGTAATAGGTTGGAAGATGGTTGAATTCCCGTTGGACCCAACTCTAGCAAAGATGCTTCTCATGGGAGAACAGCTGGAGTGCCTTGATGAAGTACTGACCATTGTGTCAATGCTCTCGGTGCCCTCAGTCTTCTTTCGTCCCAAAGATCGAGCAGAGGAGAGTGATGCAGCAAGGGAGAAATTTTTTGTTCCAGAATCTGATCATTTAACTCTTCTGAATGTCTACCTGCAATGGAAGTCGAACCAATATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAGAAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCCATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGAGGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACCCCAGCAGTGCACTCTACGGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAGCTTGTCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAGAGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACCGACACCTCGCTCTTTGACCATAAGAAGAGGCAGAAGGAGGACAAGCCCGCGATGGAGGAGGAGATGGAGAAGTTGAGGCAAGAACAAGCCGAGGCCGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGTTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGT-ACTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACATTTGGCAAGTCTGCAATGCTGTAATGATCCTGTCTAAAAAT] [+] EMBL CB662096 [GCACATGCTACAGACTGTTCACAGAATCAGCTTACCAGAATGAGATGCTACCTAACCCAGTGCCTGAGATCCAAAGGACCAATCTGGGGAATGTGGTTCTGCTACTGAAATCTCTGAAAGTCGAAAACTTGCTTGACTTTGACTTCATGGACCCACCCCCGCAGGAGAACATCCTCAACTCCATGTACCAGCTCTGGGTGTTGGGTGCCTTGAACAATGTTGGTGCTCTTACAGTAATAGGTTGGAAGATGGTTGAATTCCCGTTGGACCCAACTCTAGCAAAGATGCTTCTCATGGGAGAACAGCTGGAGTGCCTTGATGAAGTACTGACCATTGTGTCAATGCTCTCGGTGCCCTCAGTCTTCTTTCGTCCCAAAGATCGAGCAGAGGAGAGTGATGCAGCAAGGGAGAAATTTTTTGTTCCAGAATCTGATCATTTAACTCTTCTGAATGTCTACCTGCAATGGAAGTCGAACCAATATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAGAAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCCATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGAGGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACCCCAGCAGTGCACTCTACGGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAG ] [-] EMBL CB662097 [ GGGTCTCGGAAAGGCTCGAGAAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCCATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTGTGCATACTTCCATAATGCCGCGAGGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACCCCAGCAGTGCACTTTACGGCCTTGGTTACACCCCTGACTATGTTGTTTACCATGAGCTTGTCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAGAGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACCGACACCTCGCTCTTTGACCATAAGAAGAGGCAGAAGGAGGACAAGCCCGCGATGGAGGAGGAGATGGAGAAGTTGAGGCAAGAACAAGCCGAGGCCGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGTTAAGCAGCAGCAGCAAGTTTTTATTCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGT ACTGTGATTTTGTTATATCGAGGGCTTTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGAGGAATGTAACGATTACGCCACATTTGGCAAGTGTGCAATGCTGTAATG ] [-] EMBL CF279976 [ CTCCTCGACCATAAGAAGAGGCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAGGCAAGAACAAGCCGAGGCCGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGAAAAGGTCTATAGATGAGAAAACTTAATGAAAGTATTCAATGTAAATAAAATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTAAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACATTTGGCAAGTCTGCAATG AATAATGATCCTGTCTAAAAAT] [+] EMBL AY189691 [ AGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGT ACTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACATTTGGCAAGTCTG ] consensusID : consensus_10899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [TGACTGGACTGAAGGAGTAGAAACGAACCAATATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAGAAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCCATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGAGGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACCCCAGCAGTGCACTCTAC-GGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAGCTTGTCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAGAGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACC-GACACCTCGCTCCTCGACCATAAGAAGAG-GCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAG-GCAAGAACAAGCCGAGGCGGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCCAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTA-TTCAATNNACTGTGATTTTGTTATATCGAGGGCTCTTGTAC-AATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTAC-CCACCAAAGGAAAAAGGAGGCATCCTACCT-GATTTTGGTCA----AAAAAAAAAA] [+] EMBL CF279975 [TGACTGGACTGAAGGAGTAGAAACGAACCAATATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAGAAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCCATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGAGGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACCCCAGCAGTGCACTCTAC GGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAGCTTGTCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAGAGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACC GACACCTCGCTCCTCGACCATAAGAAGAG GCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAG GCAAGAACAAGCCGAGGCCGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGGGTCTATAGATGAGAAAAC ] [+] EMBL BM038196 [ ACTCTACTGACCATTGTTACA CCCTGACTATGTTGTCTACCATGAGCTTGTCCTGACGACCAAAGAGTACATCCAGTGCGTCACC CTGTTGATCCGCAGTGGCTGGCAGAGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACCTGACACCTCGCTCCTCGACCATAAGAAGAGNGCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAG GCAAGAACAAGCCGAGGCGGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGG CCCAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTACTTCAATNNACTGTGATTTTGTTATATCGAGGGCTCTTGTAC AATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTAC CCACCAAAGGAAAAAGGAGGCATCCTACCTCGATTTTGGTCACTTTAAAAAAAAAA] [+] EMBL BI807113 [ CTCCTCGACCATAAGAAGAG GCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAGTGCAAGAACAAGCCGAGGCGGC CGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGCAGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCCAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTA TTCCATCTNCTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACCAAAGGAAAAAGGAGGCATCCTAGCT GATTTTGGTCA AAAAAAAA ] consensusID : consensus_10899#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [CGAGCTCGTSCCTTTCGVVVNNNNGNGTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGTACTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACCAAAGGAAAAAGGAGGCATCCTAGCTGATTTTGGTCATTTGGCAAGTCTGCAATGCTGTAATGATCCTTGTCTTCTGTGTTGTTGAAACGAAGACTGTATCCTTGTTTATGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAADATAMAANNAYAAAGAACMNCCM] [+] EMBL AA754327 [CGAGCTCGTSCCTTTCGVVVNNNNGNGTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGTACTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACCAAAGGAAAAAGGAGGCATCCTAGCTGATTTTGGTCATTTGGCAAGTCTGCAATGCTGTAATGATCCTTGTCTTCTGTGTTGTTGAAACGAAGACTGTATCCTTGTTTATGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAADATAMAANNAYAAAGAACMNCCM] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10899#0 GCACATGCTACAGACTGTTCACAGAATCAGCTTACCAGAATGAGATGCTACCTAACCCAG 60 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 TGCCTGAGATCCAAAGGACCAATCTGGGGAATGTGGTTCTGCTACTGAAATCTCTGAAAG 120 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 TCGAAAACTTGCTTGACTTTGACTTCATGGACCCACCCCCGCAGGAGAACATCCTCAACT 180 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 CCATGTACCAGCTCTGGGTGTTGGGTGCCTTGAACAATGTTGGTGCTCTTACAGTAATAG 240 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 GTTGGAAGATGGTTGAATTCCCGTTGGACCCAACTCTAGCAAAGATGCTTCTCATGGGAG 300 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AACAGCTGGAGTGCCTTGATGAAGTACTGACCATTGTGTCAATGCTCTCGGTGCCCTCAG 360 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 TCTTCTTTCGTCCCAAAGATCGAGCAGAGGAGAGTGATGCAGCAAGGGAGAAATTTTTTG 420 consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 TTCCAGAATCTGATCATTTAACTCTTCTGAATGTCTACCTGCAATGGAAGTCGAACCAAT 480 consensus_10899#1 ---------------------------TGACTGGACTGAAGGAGTAGAAA-CGAACCAAT 32 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 ATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAG 540 consensus_10899#1 ATCGTGGAGACTGGTGTAATGACCACTTCCTCCATGTCAAGGGTCTCCGAAAGGCTCGAG 92 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCC 600 consensus_10899#1 AAGTAAGGTCACAGCTATTGGACATACTGAAAACCCTGAAGATCCCACTGACATCATGCC 152 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 ATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGA 660 consensus_10899#1 ATATGGAATGGGATGTGGTGAGAAAAGCCATCTGCTCTGCATACTTCCATAATGCCGCGA 212 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 GGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACC 720 consensus_10899#1 GGTTGAAGGGTGTCGGGGAGTATGTGAACTGCCGGAACGGGATGCCATGCCACCTCCACC 272 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 CCAGCAGTGCACTCTACGGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAGCTTG 780 consensus_10899#1 CCAGCAGTGCACTCTACGGCCTTGGTTACACCCCTGACTATGTTGTCTACCATGAGCTTG 332 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 TCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAG 840 consensus_10899#1 TCCTGACGACCAAAGAGTACATGCAGTGCGTCACCGCTGTTGACCCGCAGTGGCTGGCAG 392 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACCGACACCTCGCTCTTTGACCATAAGA 900 consensus_10899#1 AGTTGGGCCCTATGTTCTTCTCTGTTAAGGAAACCGACACCTCGCTCCTCGACCATAAGA 452 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AGAGGCAGAAGGAGGACAAGCCCGCGATGGAGGAGGAGATGGAGAAGTTGAGGCAAGAAC 960 consensus_10899#1 AGAGGCAGAAGGAGGACAAGACCGCGATGGAGGAGGAGATGGAGAAGCTGAGGCAAGAAC 512 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AAGCCGAGGCCGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGTTAAGCAGCAGC 1020 consensus_10899#1 AAGCCGAGGCGGCACGGCTTGAGAAGGAGAGGGAGCGAGAGAAGAGAGCTAAGCAGCAGC 572 consensus_10899#2 ------------------------------------------------------------ consensus_10899#0 AGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGG 1080 consensus_10899#1 AGCAAGTTTCTATGCCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCCAAAGGATGG 632 consensus_10899#2 ---------------------------------CGA-GCTCGTSCCTTTCGVVVNNNNGN 26 *** * * * * consensus_10899#0 GTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGTACTGTGATTTTGTTATATCGAG 1140 consensus_10899#1 GTCTATAGATGAGAAAACTTGATGAAAGTATTCAATNNACTGTGATTTTGTTATATCGAG 692 consensus_10899#2 GTCTATAGATGAGAAAACTTGATGAAAGTATTCAATGTACTGTGATTTTGTTATATCGAG 86 ************************************ ********************** consensus_10899#0 GGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGC 1200 consensus_10899#1 GGCTCTTGTACAA-TACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGC 751 consensus_10899#2 GGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCATTCTGC 146 ************* ********************************************** consensus_10899#0 ATGTATAACACATGGATGAATGTAACGATTAC-GCCACATTTGGCAAGTCTGCAATGCTG 1259 consensus_10899#1 ATGTATAACACATGGATGAATGTAACGATTAC-CCACCAAAGGAAAAAGGAGGCATCCTA 810 consensus_10899#2 ATGTATAACACATGGATGAATGTAACGATTACGCCACCAAAGGAAAAAGGAGGCATCCTA 206 ******************************** * ** * ** * ** ** consensus_10899#0 TAATGATCCTGTCTAAAAAT---------------------------------------- 1279 consensus_10899#1 CC-TGATTTTGGTCAAAAAAAAAAA----------------------------------- 834 consensus_10899#2 GC-TGATTTTGGTCATTTGGCAAGTCTGCAATGCTGTAATGATCCTTGTCTTCTGTGTTG 265 **** ** * consensus_10899#0 ------------------------------------------------------------ consensus_10899#1 ------------------------------------------------------------ consensus_10899#2 TTGAAACGAAGACTGTATCCTTGTTTATGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 325 consensus_10899#0 ------------------------ consensus_10899#1 ------------------------ consensus_10899#2 ADATAMAANNAYAAAGAACMNCCM 349 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||