These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1203 fasta sequence [CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC-GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT-GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA-GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA-CTAGTCTGTCCA-TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA-GTGGATTGTCTTGTATAAATACATACA-TTGCA-AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT-CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAATCAAGTTTGG] [+] EMBL AK069800 [CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACT ] [+] EMBL AK106195 [ GAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAATCAAGTTTGG] [+] EMBL AU183203 [ GAATCTCACCCCCCACCCCCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGCAGGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGTGGGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCTCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGNTTTATGTNATAAATCGCAAAAGTTNTGAAGTTCCAATGATTGATTTCCATTTGAAATACTNTGGAAA ] [+] EMBL AU173016 [ CCAACTCCGGCGACCACCTCGCCGCCATGGCCGCCCGCCGGAGCCCCGCCGC GGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTCTTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATGCTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGT GGGACGCCACTGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTCACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACAT ] [+] EMBL CA766728 [ ggggGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCTTGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAATACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTATGTTGAACATCATCCTGACTTAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATATGTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTATGTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGT ] [+] EMBL AU173017 [ TTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACA GTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACA CTAGTCTGTCCA TTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCA GTGGATTGTCTTGTATAAATACATACA TTGCA AACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTT CCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAaaaa ] [+] EMBL BQ908182 [ ATCCTTCATCCTTGCAATCTACGTCCTGCAATCATCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACACGTAGTCTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACACCTAGTCTGTCCACTTGATCAGAAAACTGTCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAAC AGAGCCACGTGGATTGTCTTGTATAAATACATACACTTGCACAACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCCTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAaaaaaaaaa ] consensusID : consensus_10908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GANTAGGGGGATTTGGANAANAGATGCCAAANATTTTTGTTAGAAAANTGGGGGNCCATTGGAGTAGAGTTCTGGAGNTTNAAGNGTGTTGGATCGGGCTGTTTATCCTTCATCCTGCATTNAAGTCCNGCAATNATTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTCTGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACCAGCCAGTGCATTNTCTTGTATAAATACATACATTGCAAACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA] [-] EMBL AA753755 [GANTAGGGGGATTTGGANAANAGATGCCAAANATTTTTGTTAGAAAANTGGGGGNCCATTGGAGTAGAGTTCTGGAGNTTNAAGNGTGTTGGATCGGGCTGTTTATCCTTCATCCTGCATTNAAGTCCNGCAATNATTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAAGGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTCTGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACCAGCCAGTGCATTNTCTTGTATAAATACATACATTGCAAACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10908#0 CCAACCCATTTACCCCGAATCTCACCCTCCACCCCCAACTCCGGCGACCACCTCGCCGCC 60 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 ATGGCCGCCCGCCGGAGCCCCGCCGCGGCCCACCACCGCCTCTTCCTCCTCCTCCTCCTC 120 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 TTCTCGGCCCTCCTCGCCCCCCTCGCGTCCGCCTACCGCCCCGGCGACATCGTCCCCATG 180 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 CTCCGCTCCGGCCAGTACCACGGCTCGAGGTCGGTGTGGTTCGATGTGGTGGGACGCCAC 240 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 TGCCCGTCCTTCGCGGTCAACCATGAGGTTATGATGCCGATCCCCAAGCCGACTGGGTTC 300 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 ACCGGTGCAGATCCTTACAAGATAACATTTCAAATTGGTCACGAAAAGTTCCACCTTCCT 360 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 TGGCTTTATGTCATAAATCGCAAAAGCTCTGAAGTTCCAATGATTGATTTCCATTTGAAA 420 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 TACTCTGGAAATGATTTACTTGGTGTCACAGCTAAAGTAGTGGACATGCCTCACATTTAT 480 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 GTTGAACATCATCCTGACATAAGGAAGAATTTCTGGGATCAACAGAATTGGCCAAAATAT 540 consensus_10908#1 ---------------------------GANTAGGGGGATTTGGANAANAGATGCCAA-AN 32 * * ***** * ** * ** * consensus_10908#0 GTTCTGGTCAGATATACATGGGAGGAGCAATCGGAGATAGATGTTCCTGGAGGTTTCTAT 600 consensus_10908#1 ATTTTTGTTAGAAAANT----GGGGGNCCATTGGAG-TAGAG--TTCTGGAGNTTNAAGN 85 ** * ** *** * * ** * ** **** **** * ****** ** consensus_10908#0 GTGTTGTTTGGATCTGGGCTTGTTCTATCCTTCATCCTTGCAATCTACGTCCTGCAATCA 660 consensus_10908#1 GTGTTG----GATC--GGGCTGTT-TATCCTTCATCCT-GCA-TTNAAGTCCNGCAATNA 136 ****** **** ** **** ************* *** * * **** ***** * consensus_10908#0 TCTCAGGAAAAGTTGACAAGATTTGTGCGAGAAGCAGTTAATGACAGTAGTCTACCGGAA 720 consensus_10908#1 TTTCAGGGAAAGTNAACAAGATTTGTGCGAGAAGCAGTCAATGACAGTAGTNTACCGGAA 196 * ***** ***** *********************** ************ ******** consensus_10908#0 GGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGCTGGAAAATTATACACTAGTC 780 consensus_10908#1 GGAGGGTTTGCAAAGGTTGAGTGATCTTTCTACAAGGAGTTGGAAAATTATCCACTAGTC 256 *************************************** *********** ******** consensus_10908#0 TGTCCATTGATCAGAAAACTGTCAGTAGATACC----GAGTTGTCAGTCAAATTTCATGG 836 consensus_10908#1 TGTCCATTGATCAGAAAACTGTCAGTAGATACCCAATGAATTGGCAGTCAAATTTCATGG 316 ********************************* ** *** **************** consensus_10908#0 GCGAGCTTTCAACTTCAAACAAGAGCCAGTGGATTGTCTTGTATAAATACATACATTGCA 896 consensus_10908#1 GCGAGCTTTCAACTTCAAACCAG--CCAGTGCATTNTCTTGTATAAATACATACATTGCA 374 ******************** ** ****** *** ************************ consensus_10908#0 AACGATTTAGCTATTAT---GACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCC 953 consensus_10908#1 AACGATTTAGCTATTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCC 434 ***************** **************************************** consensus_10908#0 CTTGGCAGAATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTG 1013 consensus_10908#1 CTTGGCAGAATGGTACTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTG 494 *************** ******************************************** consensus_10908#0 ATGTATTGCGTGATGATTTTGTCTGATGCATTTTTTTTGTGTGTGTTTTTATGCTTCTTG 1073 consensus_10908#1 ATGTATTGCGTGATGATTTTGTCTGATGCAAAAAAAAAAAAAAAAAA------------- 541 ****************************** consensus_10908#0 TGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAGGATGGAGGAGGT 1133 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 ATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAA 1193 consensus_10908#1 ------------------------------------------------------------ consensus_10908#0 TCAAGTTTGG 1203 consensus_10908#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||