These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1296 fasta sequence [CTCTTCCAACTTCCAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATCTACTCAATCAGGCCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGGTCTGTGGCCGTGCTGATGTGTGGGGAGACGGCGTCGTTCCCGAGGTGTCGGCGCATCTAGAAGGCGCACTGAACATAAGCTTCGACGGCGTGTACCACTCTCCTGTAGGTTCTGACGATGAGCAGAGGCCGTGGTATGGTTCACCGGCAATCCTCAAGCAGTGGGTACATCATCTCCTCAGTTGAACGGTTGATGGCTTTGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAAATGTATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAACTACACATTTTTCAGTGAATTAGAGGGTAGCCAATGCCATTCTATACACAACAGTACAACACACATGCGATTTTTCTTCTCCCAAAGAATTTGTAACAGTATAAATATTGCTCAATGTGCAGAGGTAATTCATCACATACATGATTGCAGGTTGTAATAGCTACACATACAGTATG] [+] EMBL CB682287 [CTCTTCCAACTTCCAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATC ] [+] EMBL CB622547 [ CTTCCAACTTCCAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATCTACTCAATCAGGCCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGG ] [+] EMBL CB617914 [ CTTCCAACTTCCAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAA ] [+] EMBL CB622548 [ CTTCCACCTT AAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGA ] [+] EMBL CB617906 [ CTTCCTTCTTACAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCACCACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCGCCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCGGCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCGCTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGGCTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGCCCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTATCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTGTACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGGACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCT ] [-] EMBL CB682288 [ ACATAAGTTTACTGCTCACACTTGGCACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATCTACTCAATCAGGCCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGGTCTGTGGCCGTGCTGATGTGTGGGGAGACGGCGTCGTTCCCGAGGTGTCGGCGCATCTAGAAGGCGCACTGAACATAAGCTTCGACGGCGTGTACCACTCTCCTGTAGGTTCTGACGATGAGCAGAGGCCGTGGTATGGTTCACCGGCAATCCTCAAGCAGTGGGTACATCATCTCCTCAGTTGAACGGTTGATGGCTTTGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAAATGTATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAACTACACATTTTTCAGTGAATTAGAGGGTAGCCAATGCCATTCTATACACAACAGTACAACACACATGCGATTTTTCTTCTCCCAAAGAATTTGTAACAGTATAAATATTGCTCAATGTGCAGAGGTA ] [-] EMBL CB622549 [ ACTCCTCACTTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTATGTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCTGGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATCTACTCAATCAGGCCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGGTCTGTGGCCGTGCTGATGTGTGGGGAGACGGCGTCGTTCCCGAGGTGTCGGCGCATCTAGAAGGCGCACTGAACATAAGCTTCGACGGCGTGTACCACTCTCCTGTAGGTTCTGACGATGAGCAGAGGCCGTGGTATGGTTCACCGGCAATCCTCAAGCAGTGGGTACATCATCTCCTCAGTTGAACGGTTGATGGCTTTGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAAATGTATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAACTACACATTTTTCAGTGAATTAGAGGGTAGCCAATGCCATTCTATACACAACAGTACAACACACATGCGATTTTTCTTCTCCCAAAGAATTTGTAACAGTATAAATATTGCTCAATGTGCAGAGGTAATTCATCACATACATGATTGCAGGTTGTAATAGCTACACATACAGTATG] consensusID : consensus_10909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TTTTNGGGGGNAATCTNTGANAAAGGGGAGCGTCNGGTCNGNCNNGGACAATTNATNATTNGGCCCNNCNNGGGGNCGGTTCATGGACAAGNAANAAGGCAGTTAGNGGCCGNTNTGAAGNGTGGGAGACGGNTTGTTCCCGGGGNGTGGCGCATTCTAGAAGGCGCANTGAAACATAGGTTTCGNCGGCGGTACCANTATCGTGTAGGTTCTGACGATGAGCAGAGGCCGTGTATGGTTCACCGGCNATCCTCAAGCAGTGGGTACATNATCTCCTCAGTTGAACGGTNGATGGCTTNGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAAATGNATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAANTACACATTTTTCAGTGAATTAGAGGGTAGCCAATGCCATTGTATACACAACAGTACAACACACATGCGATTTTTNTTCTCCCAAAGAATTTGTAACAGTATANATATTGCTCAATGTGCAGAGGTAATTCATCACNAAAAAAA] [+] EMBL AA753630 [TTTTNGGGGGNAATCTNTGANAAAGGGGAGCGTCNGGTCNGNCNNGGACAATTNATNATTNGGCCCNNCNNGGGGNCGGTTCATGGACAAGNAANAAGGCAGTTAGNGGCCGNTNTGAAGNGTGGGAGACGGNTTGTTCCCGGGGNGTGGCGCATTCTAGAAGGCGCANTGAAACATAGGTTTCGNCGGCGGTACCANTATCGTGTAGGTTCTGACGATGAGCAGAGGCCGTGTATGGTTCACCGGCNATCCTCAAGCAGTGGGTACATNATCTCCTCAGTTGAACGGTNGATGGCTTNGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAAATGNATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAANTACACATTTTTCAGTGAATTAGAGGGTAGCCAATGCCATTGTATACACAACAGTACAACACACATGCGATTTTTNTTCTCCCAAAGAATTTGTAACAGTATANATATTGCTCAATGTGCAGAGGTAATTCATCACNAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10909#0 CTCTTCCAACTTCCAAAGGCGCACGCCGCGCCACGGCGAGCCACTCGCTCCGCCCACCAC 60 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CACCACCCGCCGCCGCCGCCGCAAGGCTCGCCGGCGATCATGCTCTCCCTCCTCCTCCCG 120 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CCCGCGCGGCCGCGCGCCGCCGTCTCCCCCGACGTCACCGCCTCGGCGCCGCGCCGCCCG 180 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 GCCGTCATCCTCCCAGGGCTCGGGAACAACACGGCGGACTACGCGCGGCTCGCGGCGGCG 240 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CTGCGGGACGACCACGGGGTGCCGGCCGTCGCCGTCGCGCGGGTGTCGAGGCCCGACTGG 300 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CTCCGCAACGCCGCCGGCCTCGTCGACCCCAGCTACTGGCGATGCAACCTCCGCCCGCGC 360 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CCCGTGCTTGACTGGTACCTGAAAAGAGTCGATGAAGCTGTATCTGAGGCGAGAGAACTA 420 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 TCTCCTAATGAAGGCATATCATTGATAGGGCATTCAGCTGGGGGCTGGCTGGCGCGTGTG 480 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 TACATGGAAGAATTTGATGCTTCAGACATAAGTTTACTGCTCACACTTGGCACTCCTCAC 540 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 TTACCACCTCCAAAAGGTACTCCTGGGGTAATTGACCAAACTAGAGGACTACTGACCTAT 600 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 GTTGAGAAGAATTGTGCCCCAGCAGTTTACACTCCAGAACTAAAATATGTGTGCATTGCT 660 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 GGAAGGTACATTCAAGGTGCTCCTTTAACTGGGAACACCATCGCTACTACAGATGATATT 720 consensus_10909#1 ------------------------------------------------------------ consensus_10909#0 CTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAA 780 consensus_10909#1 -TTTTNGGGGGNAATCTNTGANA---AAGGGGAGC-GTCN-GGTCNG--NCNNGGACAAT 52 * * ** * ** * * * * * *** *** **** * * ***** consensus_10909#0 TCTACTCAATCAGGCCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGGTC 840 consensus_10909#1 T---NATNATTNGGCCCNNCN---NGGGGNCGGTTCAT-GGACAAGNA-ANAAGGCAGTT 104 * ** ***** * * * ** ***** ******* * *** ** consensus_10909#0 TGTGGCCGTGCTGATGTGTGGGGAGACGGCGTCGTTCCCGAGGTGTCGGCGCAT-CTAGA 899 consensus_10909#1 AGNGGCCGNTNTGAAGNGTGGG-AGACGGN-TTGTTCCCGGGGNGT-GGCGCATTCTAGA 161 * ***** *** * ***** ****** * ******* ** ** ******* ***** consensus_10909#0 AGGCGCACTGAA-CATAAGCTTCGACGGCGTGTACCACTCTCCTGTAGGTTCTGACGATG 958 consensus_10909#1 AGGCGCANTGAAACATAGGTTTCGNCGGCG-GTACCANTATCGTGTAGGTTCTGACGATG 220 ******* **** **** * **** ***** ****** * ** ***************** consensus_10909#0 AGCAGAGGCCGTGGTATGGTTCACCGGCAATCCTCAAGCAGTGGGTACATCATCTCCTCA 1018 consensus_10909#1 AGCAGAGGCCGTG-TATGGTTCACCGGCNATCCTCAAGCAGTGGGTACATNATCTCCTCA 279 ************* ************** ********************* ********* consensus_10909#0 GTTGAACGGTTGATGGCTTTGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAA 1078 consensus_10909#1 GTTGAACGGTNGATGGCTTNGATGCAGAGAAGCTGACGATCTGAAAGTTTGTAGACAGAA 339 ********** ******** **************************************** consensus_10909#0 ATGTATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAACTACACATTTTTCAGTGA 1138 consensus_10909#1 ATGNATTGCATGCCGCCAGGTGAGGGTTAGGCCAGGGGAAAANTACACATTTTTCAGTGA 399 *** ************************************** ***************** consensus_10909#0 ATTAGAGGGTAGCCAATGCCATTCTATACACAACAGTACAACACACATGCGATTTTTCTT 1198 consensus_10909#1 ATTAGAGGGTAGCCAATGCCATTGTATACACAACAGTACAACACACATGCGATTTTTNTT 459 *********************** ********************************* ** consensus_10909#0 CTCCCAAAGAATTTGTAACAGTATAAATATTGCTCAATGTGCAGAGGTAATTCATCACAT 1258 consensus_10909#1 CTCCCAAAGAATTTGTAACAGTATANATATTGCTCAATGTGCAGAGGTAATTCATCACNA 519 ************************* ******************************** consensus_10909#0 ACATGATTGCAGGTTGTAATAGCTACACATACAGTATG 1296 consensus_10909#1 AAAAAA-------------------------------- 525 * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||